Wall clock time and date at job start Tue Mar 31 2020 21:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46985 * 2 1 4 4 C 1.50698 * 109.47351 * 119.99647 * 2 1 3 5 5 N 1.31245 * 124.05406 * 299.98147 * 4 2 1 6 6 N 1.27337 * 120.03501 * 180.02562 * 5 4 2 7 7 S 1.56644 * 109.74012 * 359.73362 * 6 5 4 8 8 C 1.38245 * 124.05521 * 119.99964 * 4 2 1 9 9 C 1.47168 * 128.47523 * 359.94521 * 8 4 2 10 10 O 1.21621 * 120.00051 * 0.02562 * 9 8 4 11 11 N 1.34780 * 119.99781 * 180.27322 * 9 8 4 12 12 C 1.46501 * 119.99585 * 179.72545 * 11 9 8 13 13 H 1.08997 * 109.46296 * 324.97648 * 12 11 9 14 14 C 1.53047 * 109.45888 * 84.93253 * 12 11 9 15 15 C 1.53196 * 109.31038 * 181.38083 * 14 12 11 16 16 N 1.46927 * 108.77736 * 305.36517 * 15 14 12 17 17 C 1.36937 * 120.62970 * 233.63005 * 16 15 14 18 18 H 1.08000 * 119.99948 * 150.14678 * 17 16 15 19 19 C 1.38809 * 120.00033 * 330.14778 * 17 16 15 20 20 N 1.31613 * 119.99869 * 344.49617 * 19 17 16 21 21 Si 1.86804 * 119.99836 * 164.50483 * 19 17 16 22 22 H 1.48496 * 109.47242 * 89.99810 * 21 19 17 23 23 H 1.48501 * 109.46731 * 209.99922 * 21 19 17 24 24 H 1.48499 * 109.47022 * 329.99159 * 21 19 17 25 25 C 1.46922 * 118.73779 * 53.61131 * 16 15 14 26 26 H 1.09000 * 109.58734 * 66.17477 * 25 16 15 27 27 C 1.52998 * 109.58984 * 186.60325 * 25 16 15 28 28 C 1.53040 * 109.45862 * 204.99766 * 12 11 9 29 29 H 1.08997 * 109.47165 * 300.00210 * 1 2 3 30 30 H 1.09000 * 109.46932 * 60.00079 * 1 2 3 31 31 H 1.08997 * 109.46784 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47165 * 239.99790 * 2 1 3 33 33 H 1.08994 * 109.47352 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46846 * 300.00410 * 3 2 1 35 35 H 1.09002 * 109.46911 * 59.99331 * 3 2 1 36 36 H 0.96990 * 120.00197 * 359.72400 * 11 9 8 37 37 H 1.08997 * 109.49733 * 301.33398 * 14 12 11 38 38 H 1.09001 * 109.49530 * 61.43312 * 14 12 11 39 39 H 1.09003 * 109.58081 * 185.58043 * 15 14 12 40 40 H 1.09001 * 109.70082 * 65.22565 * 15 14 12 41 41 H 0.97003 * 119.99867 * 180.02562 * 20 19 17 42 42 H 1.08991 * 109.47611 * 179.29006 * 27 25 16 43 43 H 1.09004 * 109.46964 * 299.28991 * 27 25 16 44 44 H 1.09006 * 109.47107 * 59.28558 * 27 25 16 45 45 H 1.08991 * 109.49996 * 298.57114 * 28 12 11 46 46 H 1.08999 * 109.49453 * 58.63405 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.7651 -0.3316 2.4583 6 7 2.2310 -0.9895 3.4440 7 16 3.0778 -2.1988 2.9200 8 6 2.8304 -1.8388 1.2013 9 6 3.3440 -2.5671 0.0302 10 8 3.0721 -2.1838 -1.0916 11 7 4.1115 -3.6618 0.2007 12 6 4.6177 -4.3903 -0.9652 13 1 3.8747 -4.3616 -1.7621 14 6 5.9128 -3.7361 -1.4523 15 6 6.4206 -4.4792 -2.6919 16 7 6.5504 -5.9064 -2.3677 17 6 7.7306 -6.5664 -2.5836 18 1 8.0057 -7.4005 -1.9550 19 6 8.5734 -6.1635 -3.6103 20 7 8.1233 -5.3677 -4.5571 21 14 10.3462 -6.7510 -3.6483 22 1 10.4305 -8.0215 -4.4123 23 1 11.1944 -5.7226 -4.3027 24 1 10.8231 -6.9755 -2.2600 25 6 5.3899 -6.6118 -1.8070 26 1 4.5962 -6.6597 -2.5526 27 6 5.7991 -8.0280 -1.3975 28 6 4.8936 -5.8448 -0.5773 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 4.3287 -3.9673 1.0953 37 1 5.7206 -2.6937 -1.7063 38 1 6.6645 -3.7866 -0.6645 39 1 7.3924 -4.0811 -2.9840 40 1 5.7129 -4.3535 -3.5113 41 1 8.7122 -5.0865 -5.2748 42 1 4.9401 -8.5452 -0.9703 43 1 6.1519 -8.5720 -2.2737 44 1 6.5971 -7.9757 -0.6567 45 1 5.6548 -5.8754 0.2022 46 1 3.9761 -6.3030 -0.2080 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947842734.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:02 Heat of formation + Delta-G solvation = 24.384669 kcal Electronic energy + Delta-G solvation = -27529.594844 eV Core-core repulsion = 23774.213990 eV Total energy + Delta-G solvation = -3755.380854 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.22135 -40.96871 -39.24422 -36.68606 -36.10390 -34.25918 -33.21019 -32.26723 -31.14707 -28.67325 -28.07963 -27.86841 -26.67427 -24.73353 -23.64156 -22.99162 -22.10457 -21.57947 -20.84895 -19.02138 -18.71017 -18.12748 -17.22982 -17.09021 -16.90874 -16.23152 -15.92733 -15.75971 -15.61358 -15.31935 -15.18094 -14.89260 -14.54527 -14.33989 -14.10203 -14.05978 -13.44382 -13.31315 -13.06538 -12.94186 -12.71073 -12.69153 -12.59613 -12.34496 -12.25240 -12.22204 -12.10085 -12.01860 -11.81786 -11.68780 -11.51614 -11.49584 -11.24402 -10.96820 -10.90111 -10.81676 -10.53352 -10.13226 -8.61059 -7.81844 -5.27858 -1.39938 -0.29703 0.37318 0.79885 1.48595 1.50811 1.59100 1.80559 1.84849 2.54728 2.74828 3.34793 3.36962 3.54937 3.65232 3.87229 3.96441 4.06216 4.13149 4.14782 4.27632 4.41590 4.62222 4.64634 4.73143 4.77646 4.77787 4.81940 4.90179 4.91104 4.97788 5.07139 5.08965 5.13030 5.18596 5.28626 5.35162 5.42437 5.44285 5.55090 5.59097 5.74849 5.76329 6.29643 6.46125 6.54972 6.96685 7.20295 7.92172 8.44425 9.25550 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018628 B = 0.002723 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.723930 B =10282.077084 C =10811.244359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.034 4.034 3 C -0.137 4.137 4 C 0.105 3.895 5 N -0.262 5.262 6 N -0.280 5.280 7 S 0.502 5.498 8 C -0.310 4.310 9 C 0.602 3.398 10 O -0.545 6.545 11 N -0.699 5.699 12 C 0.163 3.837 13 H 0.068 0.932 14 C -0.132 4.132 15 C 0.184 3.816 16 N -0.603 5.603 17 C -0.248 4.248 18 H 0.080 0.920 19 C -0.055 4.055 20 N -0.939 5.939 21 Si 0.960 3.040 22 H -0.287 1.287 23 H -0.300 1.300 24 H -0.267 1.267 25 C 0.160 3.840 26 H 0.013 0.987 27 C -0.128 4.128 28 C -0.121 4.121 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.049 0.951 32 H 0.106 0.894 33 H 0.045 0.955 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.412 0.588 37 H 0.049 0.951 38 H 0.063 0.937 39 H 0.053 0.947 40 H -0.010 1.010 41 H 0.246 0.754 42 H 0.077 0.923 43 H 0.038 0.962 44 H 0.055 0.945 45 H 0.078 0.922 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.811 5.891 16.296 21.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.056 4.056 3 C -0.195 4.195 4 C -0.044 4.044 5 N -0.127 5.127 6 N -0.261 5.261 7 S 0.639 5.361 8 C -0.451 4.451 9 C 0.386 3.614 10 O -0.423 6.423 11 N -0.350 5.350 12 C 0.059 3.941 13 H 0.086 0.914 14 C -0.173 4.173 15 C 0.057 3.943 16 N -0.327 5.327 17 C -0.378 4.378 18 H 0.097 0.903 19 C -0.250 4.250 20 N -0.586 5.586 21 Si 0.789 3.211 22 H -0.214 1.214 23 H -0.226 1.226 24 H -0.191 1.191 25 C 0.054 3.946 26 H 0.031 0.969 27 C -0.185 4.185 28 C -0.160 4.160 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.123 0.877 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.249 0.751 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.008 0.992 41 H 0.055 0.945 42 H 0.096 0.904 43 H 0.057 0.943 44 H 0.074 0.926 45 H 0.097 0.903 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.902 6.157 17.399 22.519 hybrid contribution 1.105 0.077 -1.782 2.099 sum -11.796 6.234 15.617 20.540 Atomic orbital electron populations 1.21768 0.91986 1.02091 1.03481 1.20205 0.97642 0.96580 0.91173 1.21778 1.00604 0.93599 1.03499 1.23133 0.94185 0.92589 0.94449 1.70605 1.20877 1.25036 0.96142 1.78671 1.14327 1.08260 1.24864 1.82151 1.37057 1.25428 0.91481 1.27735 1.11343 1.04704 1.01290 1.16628 0.78238 0.80258 0.86286 1.90785 1.59419 1.67135 1.24967 1.45921 1.50765 1.27354 1.10999 1.20803 0.94563 0.91707 0.86987 0.91417 1.22338 0.96996 0.98458 0.99467 1.20435 0.98327 0.83859 0.91691 1.44432 1.09197 1.05125 1.73979 1.19516 0.95521 1.13792 1.08962 0.90293 1.25839 1.02814 1.01067 0.95247 1.70186 1.35374 1.40280 1.12768 0.85382 0.80920 0.76915 0.77880 1.21434 1.22635 1.19135 1.20632 0.88743 0.92585 0.92671 0.96898 1.21714 1.01282 0.94813 1.00693 1.22232 1.02252 0.92394 0.99157 0.91721 0.89883 0.93216 0.87657 0.93550 0.89871 0.91668 0.75140 0.93249 0.91797 0.92881 0.99168 0.94480 0.90389 0.94313 0.92578 0.90291 0.88849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.16 71.98 0.66 -1.76 16 2 C -0.03 -0.73 3.25 -11.54 -0.04 -0.77 16 3 C -0.14 -2.57 9.16 71.98 0.66 -1.91 16 4 C 0.10 2.42 5.53 42.65 0.24 2.65 16 5 N -0.26 -6.15 11.51 -48.18 -0.55 -6.71 16 6 N -0.28 -5.95 12.51 37.02 0.46 -5.49 16 7 S 0.50 7.71 23.05 -56.49 -1.30 6.41 16 8 C -0.31 -6.79 6.80 24.62 0.17 -6.62 16 9 C 0.60 15.82 7.77 86.59 0.67 16.49 16 10 O -0.54 -18.29 14.21 -4.10 -0.06 -18.35 16 11 N -0.70 -16.19 5.07 -445.91 -2.26 -18.45 16 12 C 0.16 4.94 2.42 45.02 0.11 5.05 16 13 H 0.07 2.37 7.58 -2.39 -0.02 2.35 16 14 C -0.13 -4.88 5.65 30.68 0.17 -4.70 16 15 C 0.18 8.75 5.28 86.36 0.46 9.21 16 16 N -0.60 -28.37 2.99 -675.22 -2.02 -30.39 16 17 C -0.25 -12.75 8.58 84.03 0.72 -12.03 16 18 H 0.08 3.86 6.23 -2.91 -0.02 3.84 16 19 C -0.05 -2.99 4.94 84.86 0.42 -2.57 16 20 N -0.94 -55.35 11.23 21.65 0.24 -55.10 16 21 Si 0.96 43.86 29.58 68.60 2.03 45.89 16 22 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 23 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 25 C 0.16 5.90 3.50 44.98 0.16 6.06 16 26 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 27 C -0.13 -4.11 7.95 71.98 0.57 -3.54 16 28 C -0.12 -3.31 4.84 30.67 0.15 -3.16 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.11 2.72 5.49 -2.39 -0.01 2.70 16 33 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.41 6.62 8.03 -92.72 -0.74 5.88 16 37 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.05 2.89 6.15 -2.39 -0.01 2.88 16 40 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 41 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 42 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.04 1.42 7.67 -2.38 -0.02 1.40 16 44 H 0.06 1.79 7.40 -2.38 -0.02 1.77 16 45 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -67.40 378.98 1.91 -65.49 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.25 Total: 14.31 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: 5.11 Total: 2.39 kcal Atomic # 7 Polarization: -112.01 SS G_CDS: -4.13 Total: -116.14 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.06 Total: -18.35 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: 7.71 SS G_CDS: -1.30 Total: 6.41 kcal Total: -67.40 1.91 -65.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947842734.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.879 kcal (2) G-P(sol) polarization free energy of solvation -67.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds