Wall clock time and date at job start Tue Mar 31 2020 22:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46258 * 2 1 4 4 C 1.53047 * 109.45942 * 240.04529 * 2 1 3 5 5 C 1.53194 * 109.31079 * 178.61407 * 4 2 1 6 6 N 1.46926 * 108.77479 * 54.63645 * 5 4 2 7 7 C 1.36943 * 120.62640 * 126.41396 * 6 5 4 8 8 H 1.07996 * 120.00006 * 331.79612 * 7 6 5 9 9 C 1.38812 * 119.99396 * 151.80227 * 7 6 5 10 10 N 1.31613 * 120.00454 * 343.11513 * 9 7 6 11 11 Si 1.86807 * 119.99638 * 163.12010 * 9 7 6 12 12 H 1.48497 * 109.47440 * 59.99429 * 11 9 7 13 13 H 1.48494 * 109.47156 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46966 * 299.99532 * 11 9 7 15 15 C 1.46918 * 118.73884 * 306.38815 * 6 5 4 16 16 C 1.53037 * 109.46165 * 119.98213 * 2 1 3 17 17 H 1.09004 * 109.52037 * 301.35004 * 16 2 1 18 18 N 1.46498 * 109.50234 * 61.43250 * 16 2 1 19 19 C 1.34772 * 120.00132 * 204.84365 * 18 16 2 20 20 O 1.21283 * 119.99987 * 359.97438 * 19 18 16 21 21 C 1.50706 * 120.00186 * 179.97438 * 19 18 16 22 22 C 1.50700 * 109.47351 * 179.97438 * 21 19 18 23 23 C 1.38230 * 119.98658 * 99.99936 * 22 21 19 24 24 C 1.38183 * 120.04650 * 180.02562 * 23 22 21 25 25 C 1.38492 * 120.03048 * 359.97406 * 24 23 22 26 26 F 1.35098 * 120.01737 * 179.97438 * 25 24 23 27 27 C 1.38400 * 119.97196 * 0.02562 * 25 24 23 28 28 C 1.38449 * 119.95082 * 359.76448 * 27 25 24 29 29 F 1.35093 * 120.01532 * 180.23021 * 28 27 25 30 30 H 1.08993 * 109.47073 * 300.01988 * 1 2 3 31 31 H 1.08997 * 109.47233 * 60.02435 * 1 2 3 32 32 H 1.08999 * 109.46859 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.49757 * 58.66653 * 4 2 1 34 34 H 1.08996 * 109.49836 * 298.56961 * 4 2 1 35 35 H 1.08994 * 109.58813 * 294.84724 * 5 4 2 36 36 H 1.08999 * 109.58269 * 174.42505 * 5 4 2 37 37 H 0.97003 * 120.00156 * 180.02562 * 10 9 7 38 38 H 1.08999 * 109.58622 * 173.39827 * 15 6 5 39 39 H 1.08994 * 109.59146 * 293.82259 * 15 6 5 40 40 H 0.96999 * 119.99868 * 24.83763 * 18 16 2 41 41 H 1.09001 * 109.47038 * 299.99885 * 21 19 18 42 42 H 1.08995 * 109.46964 * 59.99474 * 21 19 18 43 43 H 1.07998 * 119.97696 * 359.97438 * 23 22 21 44 44 H 1.08001 * 119.98493 * 179.97438 * 24 23 22 45 45 H 1.07998 * 120.02653 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7205 -1.2503 5 6 3.5714 -0.6883 -1.2644 6 7 4.0679 -1.2488 -0.0003 7 6 4.9765 -2.2734 -0.0006 8 1 5.0042 -2.9704 -0.8251 9 6 5.8618 -2.4161 1.0590 10 7 6.0658 -1.4127 1.8859 11 14 6.7637 -4.0325 1.3112 12 1 7.5875 -4.3320 0.1125 13 1 7.6440 -3.9275 2.5025 14 1 5.7771 -5.1227 1.5188 15 6 3.5714 -0.6889 1.2640 16 6 2.0399 -0.7211 1.2498 17 1 1.6573 -0.2217 2.1400 18 7 1.5802 -2.1120 1.2338 19 6 1.4548 -2.7937 2.3896 20 8 1.7229 -2.2558 3.4430 21 6 0.9813 -4.2243 2.3731 22 6 0.9291 -4.7525 3.7835 23 6 -0.2775 -4.8100 4.4555 24 6 -0.3268 -5.2936 5.7490 25 6 0.8328 -5.7218 6.3735 26 9 0.7845 -6.1940 7.6383 27 6 2.0415 -5.6646 5.7017 28 6 2.0891 -5.1840 4.4042 29 9 3.2674 -5.1320 3.7456 30 1 -0.3633 0.5141 0.8897 31 1 -0.3633 0.5134 -0.8902 32 1 -0.3633 -1.0277 0.0005 33 1 1.6573 -0.2203 -2.1400 34 1 1.6978 -1.7554 -1.2388 35 1 3.9143 0.3411 -1.3673 36 1 3.9417 -1.2841 -2.0987 37 1 6.6848 -1.5124 2.6261 38 1 3.9417 -1.2850 2.0981 39 1 3.9143 0.3406 1.3674 40 1 1.3661 -2.5423 0.3912 41 1 -0.0132 -4.2729 1.9295 42 1 1.6715 -4.8286 1.7845 43 1 -1.1823 -4.4760 3.9695 44 1 -1.2700 -5.3377 6.2732 45 1 2.9464 -5.9979 6.1880 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966232694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:32 Heat of formation + Delta-G solvation = -85.766983 kcal Electronic energy + Delta-G solvation = -30630.813468 eV Core-core repulsion = 26284.522942 eV Total energy + Delta-G solvation = -4346.290526 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.06010 -48.77716 -39.81343 -38.79628 -37.39626 -34.10869 -32.85147 -32.55336 -31.00502 -30.82954 -29.33117 -27.57387 -26.83200 -24.04701 -23.24139 -22.59015 -21.87121 -21.07762 -20.24686 -18.65681 -18.17885 -17.25774 -17.00199 -16.61748 -16.03890 -15.84809 -15.52545 -15.13396 -14.95291 -14.92654 -14.48429 -14.24914 -13.95205 -13.86125 -13.78266 -13.42269 -13.21463 -13.12602 -12.77685 -12.55349 -12.03599 -11.96764 -11.83636 -11.70722 -11.54547 -11.41433 -11.32446 -11.05411 -10.88601 -10.67094 -10.50465 -10.21908 -9.90563 -9.68866 -9.49382 -9.37571 -9.05886 -8.58983 -8.41559 -8.32709 -6.61539 -5.73433 -3.16977 0.90167 0.99782 3.17185 3.26422 3.41843 3.49080 3.50172 3.86657 3.87946 4.41369 4.48823 4.54060 4.58290 4.76252 5.04439 5.17198 5.23767 5.29941 5.35497 5.38158 5.45867 5.53772 5.57568 5.75755 5.77702 5.87028 5.91631 5.93051 5.97901 6.00454 6.13879 6.17187 6.29690 6.36520 6.44771 6.55133 6.67397 6.73434 6.76036 6.89443 7.02165 7.40647 7.70564 7.83733 8.12389 8.50233 8.82217 9.25081 9.89339 10.44911 11.34361 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010993 B = 0.004611 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.577351 B = 6070.860583 C = 7993.403315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 H 0.076 0.924 4 C -0.128 4.128 5 C 0.142 3.858 6 N -0.586 5.586 7 C -0.257 4.257 8 H 0.062 0.938 9 C 0.011 3.989 10 N -0.897 5.897 11 Si 0.894 3.106 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.281 1.281 15 C 0.161 3.839 16 C 0.127 3.873 17 H 0.074 0.926 18 N -0.697 5.697 19 C 0.516 3.484 20 O -0.540 6.540 21 C -0.104 4.104 22 C -0.103 4.103 23 C -0.053 4.053 24 C -0.167 4.167 25 C 0.124 3.876 26 F -0.136 7.136 27 C -0.193 4.193 28 C 0.153 3.847 29 F -0.118 7.118 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.017 0.983 36 H 0.053 0.947 37 H 0.254 0.746 38 H 0.097 0.903 39 H 0.023 0.977 40 H 0.394 0.606 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.034 -5.554 0.983 16.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.095 0.905 4 C -0.168 4.168 5 C 0.016 3.984 6 N -0.309 5.309 7 C -0.386 4.386 8 H 0.080 0.920 9 C -0.189 4.189 10 N -0.540 5.540 11 Si 0.724 3.276 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.207 1.207 15 C 0.034 3.966 16 C 0.021 3.979 17 H 0.092 0.908 18 N -0.348 5.348 19 C 0.301 3.699 20 O -0.417 6.417 21 C -0.144 4.144 22 C -0.105 4.105 23 C -0.071 4.071 24 C -0.186 4.186 25 C 0.105 3.895 26 F -0.114 7.114 27 C -0.213 4.213 28 C 0.134 3.866 29 F -0.096 7.096 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.035 0.965 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.115 0.885 39 H 0.041 0.959 40 H 0.229 0.771 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.159 0.841 44 H 0.158 0.842 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.642 -5.154 1.898 16.578 hybrid contribution 0.808 -1.062 -0.080 1.337 sum -14.834 -6.215 1.817 16.185 Atomic orbital electron populations 1.21839 0.96046 1.01278 1.00894 1.21311 0.94536 0.99878 0.95577 0.90545 1.22079 0.99268 0.99377 0.96042 1.20929 0.90693 0.96489 0.90336 1.43959 1.48293 1.39579 0.99091 1.19008 1.09904 1.03062 1.06644 0.91986 1.24985 0.97058 0.97053 0.99771 1.69979 1.37152 1.28998 1.17918 0.86497 0.79510 0.84367 0.77226 1.21055 1.21664 1.20699 1.21187 0.86748 0.97670 0.90996 1.21769 0.98900 0.80517 0.96724 0.90774 1.45769 1.66923 1.14026 1.08055 1.20090 0.78115 0.87345 0.84373 1.90703 1.50286 1.69899 1.30862 1.20613 1.04388 0.95392 0.94039 1.19460 0.92459 1.01555 0.97004 1.20695 0.97035 0.96159 0.93239 1.21072 0.97722 1.03561 0.96245 1.17259 0.93886 0.98560 0.79829 1.91508 1.97194 1.85940 1.36780 1.21012 0.98853 1.06716 0.94723 1.17179 0.81525 0.97859 0.90080 1.91631 1.44378 1.93543 1.80036 0.93170 0.93213 0.93066 0.92863 0.92712 0.96533 0.92861 0.93562 0.88501 0.95893 0.77094 0.87803 0.87440 0.84104 0.84201 0.83548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.05 37.16 0.34 -1.40 16 2 C -0.09 -1.42 2.48 -90.58 -0.22 -1.65 16 3 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 4 C -0.13 -1.95 5.20 -26.61 -0.14 -2.09 16 5 C 0.14 2.79 6.52 -3.71 -0.02 2.76 16 6 N -0.59 -14.06 2.91 -172.33 -0.50 -14.56 16 7 C -0.26 -6.91 9.58 -15.06 -0.14 -7.05 16 8 H 0.06 1.64 7.88 -52.49 -0.41 1.22 16 9 C 0.01 0.31 4.92 -17.43 -0.09 0.22 16 10 N -0.90 -26.76 11.19 55.49 0.62 -26.14 16 11 Si 0.89 22.39 29.59 -169.99 -5.03 17.36 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 14 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 15 C 0.16 3.83 4.90 -3.71 -0.02 3.82 16 16 C 0.13 2.35 2.24 -67.81 -0.15 2.20 16 17 H 0.07 1.44 7.58 -51.93 -0.39 1.05 16 18 N -0.70 -11.77 4.25 -53.69 -0.23 -12.00 16 19 C 0.52 9.19 7.78 -10.98 -0.09 9.10 16 20 O -0.54 -11.85 15.62 5.55 0.09 -11.76 16 21 C -0.10 -1.41 5.56 -29.03 -0.16 -1.57 16 22 C -0.10 -1.45 4.43 -104.55 -0.46 -1.92 16 23 C -0.05 -0.59 9.66 -39.60 -0.38 -0.97 16 24 C -0.17 -1.81 10.02 -39.51 -0.40 -2.21 16 25 C 0.12 1.58 7.30 -39.43 -0.29 1.29 16 26 F -0.14 -1.71 17.27 2.25 0.04 -1.67 16 27 C -0.19 -2.74 10.01 -39.44 -0.39 -3.13 16 28 C 0.15 2.47 7.13 -39.43 -0.28 2.19 16 29 F -0.12 -2.29 16.66 2.25 0.04 -2.26 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.59 7.54 -51.93 -0.39 0.20 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.81 6.40 -51.93 -0.33 0.48 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 37 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.10 2.75 6.06 -51.93 -0.31 2.44 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.39 5.84 6.64 -40.82 -0.27 5.57 16 41 H 0.10 0.96 8.00 -51.93 -0.42 0.54 16 42 H 0.11 1.47 7.94 -51.93 -0.41 1.05 16 43 H 0.14 1.12 8.04 -52.49 -0.42 0.70 16 44 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 45 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 372.87 15.07 5.62 5.62 Total: -1.00 -32.82 372.87 -8.55 -41.38 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -6.30 Total: 4.44 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -2.90 Total: -0.41 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: -0.11 Total: -52.70 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.09 Total: -11.76 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.08 Total: -3.93 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.03 Total: 17.36 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.82 -8.55 -41.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966232694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.388 kcal (2) G-P(sol) polarization free energy of solvation -32.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds