Wall clock time and date at job start Tue Mar 31 2020 22:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46258 * 2 1 4 4 C 1.53047 * 109.45942 * 240.04529 * 2 1 3 5 5 C 1.53194 * 109.31079 * 178.61407 * 4 2 1 6 6 N 1.46926 * 108.77479 * 54.63645 * 5 4 2 7 7 C 1.36943 * 120.62640 * 126.41396 * 6 5 4 8 8 H 1.07996 * 120.00006 * 331.79612 * 7 6 5 9 9 C 1.38812 * 119.99396 * 151.80227 * 7 6 5 10 10 N 1.31613 * 120.00454 * 343.11513 * 9 7 6 11 11 Si 1.86807 * 119.99638 * 163.12010 * 9 7 6 12 12 H 1.48497 * 109.47440 * 59.99429 * 11 9 7 13 13 H 1.48494 * 109.47156 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46966 * 299.99532 * 11 9 7 15 15 C 1.46918 * 118.73884 * 306.38815 * 6 5 4 16 16 C 1.53037 * 109.46165 * 119.98213 * 2 1 3 17 17 H 1.09004 * 109.52037 * 301.35004 * 16 2 1 18 18 N 1.46498 * 109.50234 * 61.43250 * 16 2 1 19 19 C 1.34772 * 120.00132 * 204.84365 * 18 16 2 20 20 O 1.21283 * 119.99987 * 359.97438 * 19 18 16 21 21 C 1.50706 * 120.00186 * 179.97438 * 19 18 16 22 22 C 1.50700 * 109.47351 * 179.97438 * 21 19 18 23 23 C 1.38230 * 119.98658 * 99.99936 * 22 21 19 24 24 C 1.38183 * 120.04650 * 180.02562 * 23 22 21 25 25 C 1.38492 * 120.03048 * 359.97406 * 24 23 22 26 26 F 1.35098 * 120.01737 * 179.97438 * 25 24 23 27 27 C 1.38400 * 119.97196 * 0.02562 * 25 24 23 28 28 C 1.38449 * 119.95082 * 359.76448 * 27 25 24 29 29 F 1.35093 * 120.01532 * 180.23021 * 28 27 25 30 30 H 1.08993 * 109.47073 * 300.01988 * 1 2 3 31 31 H 1.08997 * 109.47233 * 60.02435 * 1 2 3 32 32 H 1.08999 * 109.46859 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.49757 * 58.66653 * 4 2 1 34 34 H 1.08996 * 109.49836 * 298.56961 * 4 2 1 35 35 H 1.08994 * 109.58813 * 294.84724 * 5 4 2 36 36 H 1.08999 * 109.58269 * 174.42505 * 5 4 2 37 37 H 0.97003 * 120.00156 * 180.02562 * 10 9 7 38 38 H 1.08999 * 109.58622 * 173.39827 * 15 6 5 39 39 H 1.08994 * 109.59146 * 293.82259 * 15 6 5 40 40 H 0.96999 * 119.99868 * 24.83763 * 18 16 2 41 41 H 1.09001 * 109.47038 * 299.99885 * 21 19 18 42 42 H 1.08995 * 109.46964 * 59.99474 * 21 19 18 43 43 H 1.07998 * 119.97696 * 359.97438 * 23 22 21 44 44 H 1.08001 * 119.98493 * 179.97438 * 24 23 22 45 45 H 1.07998 * 120.02653 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7205 -1.2503 5 6 3.5714 -0.6883 -1.2644 6 7 4.0679 -1.2488 -0.0003 7 6 4.9765 -2.2734 -0.0006 8 1 5.0042 -2.9704 -0.8251 9 6 5.8618 -2.4161 1.0590 10 7 6.0658 -1.4127 1.8859 11 14 6.7637 -4.0325 1.3112 12 1 7.5875 -4.3320 0.1125 13 1 7.6440 -3.9275 2.5025 14 1 5.7771 -5.1227 1.5188 15 6 3.5714 -0.6889 1.2640 16 6 2.0399 -0.7211 1.2498 17 1 1.6573 -0.2217 2.1400 18 7 1.5802 -2.1120 1.2338 19 6 1.4548 -2.7937 2.3896 20 8 1.7229 -2.2558 3.4430 21 6 0.9813 -4.2243 2.3731 22 6 0.9291 -4.7525 3.7835 23 6 -0.2775 -4.8100 4.4555 24 6 -0.3268 -5.2936 5.7490 25 6 0.8328 -5.7218 6.3735 26 9 0.7845 -6.1940 7.6383 27 6 2.0415 -5.6646 5.7017 28 6 2.0891 -5.1840 4.4042 29 9 3.2674 -5.1320 3.7456 30 1 -0.3633 0.5141 0.8897 31 1 -0.3633 0.5134 -0.8902 32 1 -0.3633 -1.0277 0.0005 33 1 1.6573 -0.2203 -2.1400 34 1 1.6978 -1.7554 -1.2388 35 1 3.9143 0.3411 -1.3673 36 1 3.9417 -1.2841 -2.0987 37 1 6.6848 -1.5124 2.6261 38 1 3.9417 -1.2850 2.0981 39 1 3.9143 0.3406 1.3674 40 1 1.3661 -2.5423 0.3912 41 1 -0.0132 -4.2729 1.9295 42 1 1.6715 -4.8286 1.7845 43 1 -1.1823 -4.4760 3.9695 44 1 -1.2700 -5.3377 6.2732 45 1 2.9464 -5.9979 6.1880 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966232694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:31 Heat of formation + Delta-G solvation = -105.610562 kcal Electronic energy + Delta-G solvation = -30631.673950 eV Core-core repulsion = 26284.522942 eV Total energy + Delta-G solvation = -4347.151008 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.09524 -50.04795 -41.18150 -39.94641 -38.84007 -35.89949 -34.30378 -33.70528 -32.80119 -31.82016 -30.87637 -29.00176 -28.14952 -25.79573 -24.24602 -24.00640 -23.12314 -22.70630 -21.51549 -20.24553 -19.26034 -18.65204 -18.35226 -18.17099 -17.17232 -16.97657 -16.86780 -16.65884 -16.35835 -16.27011 -15.83706 -15.67802 -15.45479 -15.24659 -14.88819 -14.83165 -14.69076 -14.53686 -14.10611 -13.88617 -13.55633 -13.14423 -13.01535 -12.99462 -12.93276 -12.72393 -12.68270 -12.59336 -12.46344 -12.33891 -12.27439 -11.93519 -11.53122 -11.27438 -11.03681 -10.83927 -10.53326 -10.08304 -9.86929 -9.64322 -8.63776 -7.87140 -5.31676 -0.11517 -0.00059 1.36737 1.43801 1.45807 1.80659 2.20260 2.47181 2.61944 2.85681 3.29760 3.38449 3.52196 3.56556 3.70192 3.86884 3.90345 4.03083 4.09224 4.11286 4.17463 4.43359 4.52568 4.56264 4.71140 4.74574 4.79926 4.83308 4.88146 4.92163 4.97034 4.99358 5.02183 5.13823 5.20022 5.20294 5.28550 5.30498 5.51380 5.55695 5.61154 5.73055 5.75205 5.80290 6.38636 6.77167 7.14670 7.47653 7.88740 8.38767 9.17244 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010993 B = 0.004611 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.577351 B = 6070.860583 C = 7993.403315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.087 4.087 3 H 0.070 0.930 4 C -0.115 4.115 5 C 0.134 3.866 6 N -0.599 5.599 7 C -0.247 4.247 8 H 0.071 0.929 9 C -0.046 4.046 10 N -0.934 5.934 11 Si 0.945 3.055 12 H -0.268 1.268 13 H -0.305 1.305 14 H -0.279 1.279 15 C 0.171 3.829 16 C 0.140 3.860 17 H 0.061 0.939 18 N -0.689 5.689 19 C 0.508 3.492 20 O -0.589 6.589 21 C -0.096 4.096 22 C -0.115 4.115 23 C -0.042 4.042 24 C -0.151 4.151 25 C 0.116 3.884 26 F -0.136 7.136 27 C -0.207 4.207 28 C 0.110 3.890 29 F -0.151 7.151 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.009 0.991 36 H 0.057 0.943 37 H 0.243 0.757 38 H 0.045 0.955 39 H -0.010 1.010 40 H 0.408 0.592 41 H 0.159 0.841 42 H 0.103 0.897 43 H 0.185 0.815 44 H 0.178 0.822 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.319 -6.415 -1.010 21.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.106 4.106 3 H 0.088 0.912 4 C -0.153 4.153 5 C 0.009 3.991 6 N -0.323 5.323 7 C -0.378 4.378 8 H 0.089 0.911 9 C -0.242 4.242 10 N -0.581 5.581 11 Si 0.775 3.225 12 H -0.193 1.193 13 H -0.232 1.232 14 H -0.206 1.206 15 C 0.044 3.956 16 C 0.033 3.967 17 H 0.079 0.921 18 N -0.339 5.339 19 C 0.295 3.705 20 O -0.469 6.469 21 C -0.135 4.135 22 C -0.116 4.116 23 C -0.059 4.059 24 C -0.169 4.169 25 C 0.097 3.903 26 F -0.115 7.115 27 C -0.227 4.227 28 C 0.091 3.909 29 F -0.129 7.129 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.027 0.973 36 H 0.076 0.924 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.008 0.992 40 H 0.245 0.755 41 H 0.176 0.824 42 H 0.121 0.879 43 H 0.203 0.797 44 H 0.195 0.805 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -19.959 -6.037 -0.165 20.853 hybrid contribution 2.132 -0.749 0.552 2.326 sum -17.828 -6.786 0.387 19.079 Atomic orbital electron populations 1.21744 0.92653 1.02522 1.02105 1.21263 0.97174 0.98835 0.93367 0.91175 1.21952 0.95227 1.00710 0.97446 1.21169 0.94068 0.95697 0.88130 1.44165 1.48070 1.39382 1.00648 1.19382 1.08986 1.03418 1.05970 0.91094 1.25638 0.98752 0.99389 1.00387 1.70157 1.38470 1.30818 1.18606 0.85656 0.78494 0.81446 0.76932 1.19322 1.23239 1.20570 1.20867 0.90628 0.94574 0.89567 1.21384 0.94681 0.82199 0.98449 0.92118 1.45670 1.66223 1.13338 1.08712 1.20936 0.77045 0.88901 0.83646 1.90684 1.52251 1.71365 1.32644 1.20665 1.07015 0.91586 0.94281 1.19731 0.92765 1.01550 0.97573 1.21195 0.97232 0.94450 0.93051 1.21536 0.98252 1.01042 0.96103 1.17428 0.94105 0.98915 0.79869 1.91508 1.97183 1.85994 1.36783 1.21096 0.99885 1.07207 0.94509 1.17666 0.81401 1.00675 0.91169 1.91535 1.46427 1.94201 1.80783 0.93273 0.90760 0.91785 0.89150 0.91453 0.97276 0.92436 0.94841 0.93640 0.99187 0.75484 0.82367 0.87864 0.79743 0.80468 0.83797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 9.05 71.98 0.65 -1.99 16 2 C -0.09 -2.43 2.48 -10.77 -0.03 -2.45 16 3 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 4 C -0.11 -3.07 5.20 30.67 0.16 -2.91 16 5 C 0.13 5.09 6.52 86.36 0.56 5.65 16 6 N -0.60 -29.13 2.91 -699.13 -2.03 -31.16 16 7 C -0.25 -13.49 9.58 84.03 0.81 -12.69 16 8 H 0.07 3.70 7.88 -2.91 -0.02 3.68 16 9 C -0.05 -2.70 4.92 84.86 0.42 -2.28 16 10 N -0.93 -59.16 11.19 21.65 0.24 -58.92 16 11 Si 0.95 47.81 29.59 68.60 2.03 49.84 16 12 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 13 H -0.31 -16.04 7.11 99.48 0.71 -15.33 16 14 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 15 C 0.17 8.54 4.90 86.36 0.42 8.96 16 16 C 0.14 5.17 2.24 45.07 0.10 5.27 16 17 H 0.06 2.42 7.58 -2.38 -0.02 2.40 16 18 N -0.69 -22.33 4.25 -442.16 -1.88 -24.21 16 19 C 0.51 17.77 7.78 87.66 0.68 18.45 16 20 O -0.59 -26.55 15.62 -3.04 -0.05 -26.60 16 21 C -0.10 -2.38 5.56 29.10 0.16 -2.22 16 22 C -0.11 -3.07 4.43 -19.82 -0.09 -3.15 16 23 C -0.04 -0.77 9.66 22.25 0.22 -0.55 16 24 C -0.15 -2.76 10.02 22.32 0.22 -2.54 16 25 C 0.12 2.83 7.30 22.37 0.16 2.99 16 26 F -0.14 -3.29 17.27 44.97 0.78 -2.51 16 27 C -0.21 -6.08 10.01 22.36 0.22 -5.86 16 28 C 0.11 3.68 7.13 22.37 0.16 3.84 16 29 F -0.15 -6.31 16.66 44.97 0.75 -5.56 16 30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 1.13 7.54 -2.39 -0.02 1.11 16 33 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.07 1.68 6.40 -2.39 -0.02 1.66 16 35 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.06 2.11 7.93 -2.39 -0.02 2.09 16 37 H 0.24 15.31 8.31 -92.71 -0.77 14.54 16 38 H 0.05 2.76 6.06 -2.39 -0.01 2.74 16 39 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 40 H 0.41 10.84 6.64 -92.71 -0.62 10.23 16 41 H 0.16 2.10 8.00 -2.39 -0.02 2.08 16 42 H 0.10 2.68 7.94 -2.39 -0.02 2.67 16 43 H 0.19 1.78 8.04 -2.91 -0.02 1.76 16 44 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 45 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -79.47 372.87 5.07 -74.40 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 0.40 Total: 16.20 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: 4.84 Total: 8.51 kcal Atomic # 7 Polarization: -110.62 SS G_CDS: -3.67 Total: -114.29 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.05 Total: -26.60 kcal Atomic # 9 Polarization: -9.59 SS G_CDS: 1.53 Total: -8.07 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.03 Total: 49.84 kcal Total: -79.47 5.07 -74.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966232694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.210 kcal (2) G-P(sol) polarization free energy of solvation -79.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds