Wall clock time and date at job start Tue Mar 31 2020 22:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.45720 * 2 1 4 4 C 1.53045 * 109.45977 * 240.03227 * 2 1 3 5 5 C 1.53186 * 109.31313 * 178.61287 * 4 2 1 6 6 N 1.46927 * 108.77731 * 54.63323 * 5 4 2 7 7 C 1.36932 * 120.63177 * 126.41349 * 6 5 4 8 8 H 1.08004 * 120.00038 * 207.66728 * 7 6 5 9 9 C 1.38814 * 119.99982 * 27.66313 * 7 6 5 10 10 N 1.31612 * 120.00200 * 17.37133 * 9 7 6 11 11 Si 1.86798 * 119.99944 * 197.36766 * 9 7 6 12 12 H 1.48495 * 109.47316 * 89.99828 * 11 9 7 13 13 H 1.48500 * 109.47279 * 210.00580 * 11 9 7 14 14 H 1.48509 * 109.47014 * 329.99891 * 11 9 7 15 15 C 1.46931 * 118.73618 * 306.39136 * 6 5 4 16 16 C 1.53033 * 109.45952 * 119.96228 * 2 1 3 17 17 H 1.08995 * 109.49878 * 61.43633 * 16 2 1 18 18 N 1.46495 * 109.49655 * 301.36728 * 16 2 1 19 19 C 1.34780 * 120.00106 * 155.00519 * 18 16 2 20 20 O 1.21293 * 119.99477 * 359.97438 * 19 18 16 21 21 C 1.50690 * 120.00500 * 180.02562 * 19 18 16 22 22 C 1.50695 * 109.47514 * 179.97438 * 21 19 18 23 23 C 1.38231 * 119.98923 * 264.72544 * 22 21 19 24 24 C 1.38189 * 120.04872 * 179.72345 * 23 22 21 25 25 C 1.38497 * 120.02566 * 0.54667 * 24 23 22 26 26 F 1.35102 * 120.01227 * 179.74522 * 25 24 23 27 27 C 1.38401 * 119.97457 * 359.72935 * 25 24 23 28 28 C 1.38432 * 119.94937 * 359.97438 * 27 25 24 29 29 F 1.35102 * 120.01690 * 179.97438 * 28 27 25 30 30 H 1.09002 * 109.46838 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47215 * 299.96914 * 1 2 3 32 32 H 1.09004 * 109.47225 * 59.97496 * 1 2 3 33 33 H 1.09002 * 109.49510 * 298.56589 * 4 2 1 34 34 H 1.09002 * 109.49762 * 58.65560 * 4 2 1 35 35 H 1.08996 * 109.58858 * 174.41929 * 5 4 2 36 36 H 1.09000 * 109.58501 * 294.84718 * 5 4 2 37 37 H 0.96996 * 120.00390 * 179.97438 * 10 9 7 38 38 H 1.08998 * 109.59021 * 293.82309 * 15 6 5 39 39 H 1.08998 * 109.69942 * 173.46367 * 15 6 5 40 40 H 0.97000 * 120.00070 * 334.99967 * 18 16 2 41 41 H 1.09010 * 109.47150 * 299.99657 * 21 19 18 42 42 H 1.09005 * 109.47168 * 59.99171 * 21 19 18 43 43 H 1.07998 * 119.97507 * 359.97438 * 23 22 21 44 44 H 1.07999 * 119.98516 * 180.25221 * 24 23 22 45 45 H 1.07999 * 120.02504 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7208 -1.2501 5 6 3.5713 -0.6886 -1.2643 6 7 4.0679 -1.2488 0.0000 7 6 4.9765 -2.2732 0.0000 8 1 5.0098 -2.9655 0.8284 9 6 5.8547 -2.4222 -1.0646 10 7 6.0604 -1.4204 -1.8931 11 14 6.7446 -4.0444 -1.3215 12 1 5.9275 -4.9243 -2.1950 13 1 8.0592 -3.7915 -1.9642 14 1 6.9546 -4.7069 -0.0091 15 6 3.5714 -0.6884 1.2642 16 6 2.0398 -0.7206 1.2501 17 1 1.6979 -1.7555 1.2384 18 7 1.5250 -0.0489 2.4458 19 6 1.3966 -0.7326 3.6002 20 8 1.7069 -1.9042 3.6489 21 6 0.8664 -0.0419 4.8301 22 6 0.8214 -1.0200 5.9756 23 6 -0.3496 -1.6971 6.2604 24 6 -0.3907 -2.5985 7.3070 25 6 0.7385 -2.8163 8.0788 26 9 0.6965 -3.6938 9.1052 27 6 1.9099 -2.1347 7.7982 28 6 1.9516 -1.2364 6.7457 29 9 3.0942 -0.5700 6.4708 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5133 0.8903 32 1 -0.3634 0.5142 -0.8898 33 1 1.6978 -1.7557 -1.2383 34 1 1.6571 -0.2209 -2.1399 35 1 3.9417 -1.2846 -2.0984 36 1 3.9142 0.3409 -1.3675 37 1 6.6744 -1.5243 -2.6368 38 1 3.9142 0.3412 1.3672 39 1 3.9417 -1.2822 2.0999 40 1 1.2765 0.8879 2.4068 41 1 1.5198 0.7914 5.0890 42 1 -0.1382 0.3320 4.6323 43 1 -1.2319 -1.5244 5.6621 44 1 -1.3050 -3.1300 7.5261 45 1 2.7910 -2.3042 8.3993 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966232698.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:35 Heat of formation + Delta-G solvation = -88.632986 kcal Electronic energy + Delta-G solvation = -29494.133093 eV Core-core repulsion = 25147.718288 eV Total energy + Delta-G solvation = -4346.414805 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.22428 -49.12580 -40.04592 -38.91918 -37.55946 -34.46844 -33.12357 -32.78022 -31.09663 -31.03929 -29.22631 -27.72278 -26.85238 -24.07891 -23.47032 -22.82437 -21.84120 -21.03790 -20.17121 -19.34200 -18.41817 -17.48066 -17.00441 -16.83705 -16.31474 -16.05100 -15.85504 -15.42457 -15.29269 -14.94134 -14.65076 -14.57837 -14.10586 -13.87604 -13.77672 -13.53267 -13.42522 -13.14341 -13.01008 -12.48785 -12.24360 -12.18597 -12.02513 -11.89656 -11.64725 -11.60644 -11.48616 -11.02112 -10.79903 -10.65400 -10.26169 -10.14317 -9.94932 -9.84994 -9.63538 -9.52533 -9.28051 -8.82745 -8.78605 -8.38244 -6.66046 -5.76605 -3.18541 0.68506 0.78469 2.80610 3.00506 3.41768 3.46982 3.48580 3.52384 3.65551 4.15766 4.27093 4.32102 4.53849 4.57731 4.81656 4.91843 5.12688 5.13119 5.21197 5.27795 5.38520 5.47336 5.54006 5.55314 5.61670 5.69204 5.77355 5.88575 5.93908 5.95434 6.06518 6.17012 6.22728 6.27478 6.51101 6.55967 6.63178 6.68894 6.73739 6.84258 7.01817 7.36369 7.65605 7.73077 7.85407 8.42158 8.49219 9.24222 9.86417 10.41875 11.32131 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012677 B = 0.003007 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.205842 B = 9308.815909 C =10690.189328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 H 0.067 0.933 4 C -0.134 4.134 5 C 0.167 3.833 6 N -0.587 5.587 7 C -0.250 4.250 8 H 0.067 0.933 9 C 0.002 3.998 10 N -0.904 5.904 11 Si 0.902 3.098 12 H -0.287 1.287 13 H -0.291 1.291 14 H -0.278 1.278 15 C 0.142 3.858 16 C 0.133 3.867 17 H 0.086 0.914 18 N -0.720 5.720 19 C 0.511 3.489 20 O -0.528 6.528 21 C -0.103 4.103 22 C -0.106 4.106 23 C -0.050 4.050 24 C -0.163 4.163 25 C 0.127 3.873 26 F -0.134 7.134 27 C -0.191 4.191 28 C 0.148 3.852 29 F -0.125 7.125 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.089 0.911 36 H 0.018 0.982 37 H 0.253 0.747 38 H 0.016 0.984 39 H 0.057 0.943 40 H 0.394 0.606 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.555 5.855 15.259 23.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.085 0.915 4 C -0.173 4.173 5 C 0.041 3.959 6 N -0.310 5.310 7 C -0.379 4.379 8 H 0.084 0.916 9 C -0.196 4.196 10 N -0.549 5.549 11 Si 0.732 3.268 12 H -0.214 1.214 13 H -0.218 1.218 14 H -0.204 1.204 15 C 0.014 3.986 16 C 0.028 3.972 17 H 0.104 0.896 18 N -0.371 5.371 19 C 0.295 3.705 20 O -0.404 6.404 21 C -0.143 4.143 22 C -0.108 4.108 23 C -0.068 4.068 24 C -0.182 4.182 25 C 0.107 3.893 26 F -0.112 7.112 27 C -0.211 4.211 28 C 0.128 3.872 29 F -0.104 7.104 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.036 0.964 37 H 0.063 0.937 38 H 0.034 0.966 39 H 0.076 0.924 40 H 0.228 0.772 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.160 0.840 44 H 0.160 0.840 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -16.132 4.978 15.175 22.700 hybrid contribution 0.662 -0.355 -0.075 0.755 sum -15.470 4.624 15.100 22.107 Atomic orbital electron populations 1.21849 0.96042 1.01507 1.00670 1.21304 0.94513 0.99660 0.95520 0.91499 1.22250 1.00694 0.99539 0.94862 1.20847 0.87315 0.97301 0.90395 1.43998 1.48086 1.39798 0.99130 1.19241 1.09689 1.02827 1.06176 0.91566 1.25009 0.97208 0.97506 0.99868 1.70034 1.37881 1.28975 1.18003 0.86277 0.78715 0.83705 0.78062 1.21408 1.21776 1.20364 1.21182 0.90147 0.96595 0.90655 1.21757 0.96676 0.96908 0.81874 0.89630 1.46094 1.66216 1.14170 1.10578 1.20289 0.78603 0.87387 0.84175 1.90769 1.49075 1.16144 1.84407 1.20620 1.04444 0.97926 0.91352 1.19411 0.93136 1.00920 0.97291 1.20725 0.97244 0.93423 0.95425 1.21137 0.98317 1.01518 0.97248 1.17286 0.94307 0.90531 0.87152 1.91526 1.97002 1.66357 1.56325 1.20995 0.99409 0.99964 1.00715 1.17092 0.82152 0.93061 0.94870 1.91551 1.47705 1.78124 1.92977 0.92978 0.93417 0.93004 0.92449 0.92735 0.89236 0.96351 0.93679 0.96570 0.92435 0.77213 0.87534 0.87372 0.83979 0.84005 0.83408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.02 37.16 0.34 -1.42 16 2 C -0.09 -1.41 2.27 -90.58 -0.21 -1.61 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 4 C -0.13 -2.45 5.36 -26.61 -0.14 -2.60 16 5 C 0.17 3.93 5.31 -3.71 -0.02 3.91 16 6 N -0.59 -14.99 2.99 -172.32 -0.52 -15.51 16 7 C -0.25 -7.10 9.59 -15.06 -0.14 -7.24 16 8 H 0.07 1.91 7.89 -52.48 -0.41 1.50 16 9 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 10 N -0.90 -26.43 11.19 55.49 0.62 -25.81 16 11 Si 0.90 22.31 29.59 -169.99 -5.03 17.28 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 C 0.14 3.10 6.09 -3.70 -0.02 3.08 16 16 C 0.13 2.32 2.06 -67.81 -0.14 2.18 16 17 H 0.09 1.74 7.58 -51.93 -0.39 1.35 16 18 N -0.72 -9.59 4.37 -53.69 -0.23 -9.83 16 19 C 0.51 7.23 7.79 -10.99 -0.09 7.14 16 20 O -0.53 -10.11 15.70 5.55 0.09 -10.03 16 21 C -0.10 -0.98 5.60 -29.04 -0.16 -1.14 16 22 C -0.11 -1.15 4.38 -104.54 -0.46 -1.60 16 23 C -0.05 -0.45 9.67 -39.60 -0.38 -0.83 16 24 C -0.16 -1.46 10.03 -39.50 -0.40 -1.86 16 25 C 0.13 1.33 7.30 -39.43 -0.29 1.04 16 26 F -0.13 -1.44 17.27 2.25 0.04 -1.40 16 27 C -0.19 -2.12 10.01 -39.45 -0.39 -2.51 16 28 C 0.15 1.80 7.24 -39.43 -0.29 1.52 16 29 F -0.13 -1.70 16.57 2.25 0.04 -1.66 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.49 7.35 -51.93 -0.38 0.11 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.09 2.37 6.04 -51.93 -0.31 2.06 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 1.37 7.94 -51.93 -0.41 0.96 16 40 H 0.39 3.89 8.31 -40.82 -0.34 3.55 16 41 H 0.11 0.87 7.79 -51.92 -0.40 0.47 16 42 H 0.11 0.64 8.05 -51.93 -0.42 0.22 16 43 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 44 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 45 H 0.15 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 376.04 15.07 5.67 5.67 Total: -1.00 -33.40 376.04 -8.65 -42.04 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.44 Total: 1.21 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -2.88 Total: -1.96 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: -0.13 Total: -51.14 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.03 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.08 Total: -3.06 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.03 Total: 17.28 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.40 -8.65 -42.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966232698.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.590 kcal (2) G-P(sol) polarization free energy of solvation -33.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds