Wall clock time and date at job start Tue Mar 31 2020 22:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.45720 * 2 1 4 4 C 1.53045 * 109.45977 * 240.03227 * 2 1 3 5 5 C 1.53186 * 109.31313 * 178.61287 * 4 2 1 6 6 N 1.46927 * 108.77731 * 54.63323 * 5 4 2 7 7 C 1.36932 * 120.63177 * 126.41349 * 6 5 4 8 8 H 1.08004 * 120.00038 * 207.66728 * 7 6 5 9 9 C 1.38814 * 119.99982 * 27.66313 * 7 6 5 10 10 N 1.31612 * 120.00200 * 17.37133 * 9 7 6 11 11 Si 1.86798 * 119.99944 * 197.36766 * 9 7 6 12 12 H 1.48495 * 109.47316 * 89.99828 * 11 9 7 13 13 H 1.48500 * 109.47279 * 210.00580 * 11 9 7 14 14 H 1.48509 * 109.47014 * 329.99891 * 11 9 7 15 15 C 1.46931 * 118.73618 * 306.39136 * 6 5 4 16 16 C 1.53033 * 109.45952 * 119.96228 * 2 1 3 17 17 H 1.08995 * 109.49878 * 61.43633 * 16 2 1 18 18 N 1.46495 * 109.49655 * 301.36728 * 16 2 1 19 19 C 1.34780 * 120.00106 * 155.00519 * 18 16 2 20 20 O 1.21293 * 119.99477 * 359.97438 * 19 18 16 21 21 C 1.50690 * 120.00500 * 180.02562 * 19 18 16 22 22 C 1.50695 * 109.47514 * 179.97438 * 21 19 18 23 23 C 1.38231 * 119.98923 * 264.72544 * 22 21 19 24 24 C 1.38189 * 120.04872 * 179.72345 * 23 22 21 25 25 C 1.38497 * 120.02566 * 0.54667 * 24 23 22 26 26 F 1.35102 * 120.01227 * 179.74522 * 25 24 23 27 27 C 1.38401 * 119.97457 * 359.72935 * 25 24 23 28 28 C 1.38432 * 119.94937 * 359.97438 * 27 25 24 29 29 F 1.35102 * 120.01690 * 179.97438 * 28 27 25 30 30 H 1.09002 * 109.46838 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47215 * 299.96914 * 1 2 3 32 32 H 1.09004 * 109.47225 * 59.97496 * 1 2 3 33 33 H 1.09002 * 109.49510 * 298.56589 * 4 2 1 34 34 H 1.09002 * 109.49762 * 58.65560 * 4 2 1 35 35 H 1.08996 * 109.58858 * 174.41929 * 5 4 2 36 36 H 1.09000 * 109.58501 * 294.84718 * 5 4 2 37 37 H 0.96996 * 120.00390 * 179.97438 * 10 9 7 38 38 H 1.08998 * 109.59021 * 293.82309 * 15 6 5 39 39 H 1.08998 * 109.69942 * 173.46367 * 15 6 5 40 40 H 0.97000 * 120.00070 * 334.99967 * 18 16 2 41 41 H 1.09010 * 109.47150 * 299.99657 * 21 19 18 42 42 H 1.09005 * 109.47168 * 59.99171 * 21 19 18 43 43 H 1.07998 * 119.97507 * 359.97438 * 23 22 21 44 44 H 1.07999 * 119.98516 * 180.25221 * 24 23 22 45 45 H 1.07999 * 120.02504 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7208 -1.2501 5 6 3.5713 -0.6886 -1.2643 6 7 4.0679 -1.2488 0.0000 7 6 4.9765 -2.2732 0.0000 8 1 5.0098 -2.9655 0.8284 9 6 5.8547 -2.4222 -1.0646 10 7 6.0604 -1.4204 -1.8931 11 14 6.7446 -4.0444 -1.3215 12 1 5.9275 -4.9243 -2.1950 13 1 8.0592 -3.7915 -1.9642 14 1 6.9546 -4.7069 -0.0091 15 6 3.5714 -0.6884 1.2642 16 6 2.0398 -0.7206 1.2501 17 1 1.6979 -1.7555 1.2384 18 7 1.5250 -0.0489 2.4458 19 6 1.3966 -0.7326 3.6002 20 8 1.7069 -1.9042 3.6489 21 6 0.8664 -0.0419 4.8301 22 6 0.8214 -1.0200 5.9756 23 6 -0.3496 -1.6971 6.2604 24 6 -0.3907 -2.5985 7.3070 25 6 0.7385 -2.8163 8.0788 26 9 0.6965 -3.6938 9.1052 27 6 1.9099 -2.1347 7.7982 28 6 1.9516 -1.2364 6.7457 29 9 3.0942 -0.5700 6.4708 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5133 0.8903 32 1 -0.3634 0.5142 -0.8898 33 1 1.6978 -1.7557 -1.2383 34 1 1.6571 -0.2209 -2.1399 35 1 3.9417 -1.2846 -2.0984 36 1 3.9142 0.3409 -1.3675 37 1 6.6744 -1.5243 -2.6368 38 1 3.9142 0.3412 1.3672 39 1 3.9417 -1.2822 2.0999 40 1 1.2765 0.8879 2.4068 41 1 1.5198 0.7914 5.0890 42 1 -0.1382 0.3320 4.6323 43 1 -1.2319 -1.5244 5.6621 44 1 -1.3050 -3.1300 7.5261 45 1 2.7910 -2.3042 8.3993 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966232698.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:34 Heat of formation + Delta-G solvation = -108.935721 kcal Electronic energy + Delta-G solvation = -29495.013486 eV Core-core repulsion = 25147.718288 eV Total energy + Delta-G solvation = -4347.295198 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.07667 -50.03327 -41.19078 -39.90722 -38.95419 -36.16757 -34.47711 -33.71313 -33.03678 -31.80874 -30.69663 -29.09228 -28.07538 -25.87187 -24.26392 -24.11739 -22.96093 -22.65473 -21.41799 -20.81892 -19.25705 -18.75420 -18.30528 -18.07501 -17.42569 -16.93875 -16.89500 -16.74839 -16.34307 -16.23610 -16.05179 -15.57046 -15.45191 -15.28664 -15.10164 -14.89532 -14.78448 -14.38257 -14.17243 -13.89244 -13.58161 -13.20800 -13.15578 -13.00945 -12.92708 -12.77526 -12.72124 -12.62217 -12.34287 -12.28768 -12.02328 -11.97235 -11.64895 -11.41590 -11.24271 -10.87253 -10.61296 -10.06954 -10.05771 -9.63795 -8.71492 -7.93082 -5.38455 -0.11040 0.01622 1.41923 1.42884 1.52498 1.71057 2.10320 2.43745 2.54541 2.86143 3.20474 3.37358 3.51730 3.57926 3.68992 3.77771 3.88692 4.01255 4.05910 4.12170 4.15412 4.43706 4.47751 4.54469 4.54995 4.68360 4.77394 4.80074 4.86064 4.93050 4.94101 4.97936 5.04460 5.05378 5.12355 5.20427 5.22059 5.26809 5.46938 5.48587 5.60194 5.61380 5.75508 5.76857 6.34249 6.66783 7.10564 7.38121 7.80530 8.29871 9.12336 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012677 B = 0.003007 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.205842 B = 9308.815909 C =10690.189328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.082 4.082 3 H 0.080 0.920 4 C -0.124 4.124 5 C 0.172 3.828 6 N -0.607 5.607 7 C -0.269 4.269 8 H 0.050 0.950 9 C -0.042 4.042 10 N -0.928 5.928 11 Si 0.964 3.036 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.144 3.856 16 C 0.152 3.848 17 H 0.054 0.946 18 N -0.705 5.705 19 C 0.507 3.493 20 O -0.584 6.584 21 C -0.093 4.093 22 C -0.117 4.117 23 C -0.045 4.045 24 C -0.156 4.156 25 C 0.113 3.887 26 F -0.138 7.138 27 C -0.204 4.204 28 C 0.117 3.883 29 F -0.142 7.142 30 H 0.042 0.958 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.083 0.917 35 H 0.054 0.946 36 H 0.004 0.996 37 H 0.253 0.747 38 H 0.019 0.981 39 H 0.024 0.976 40 H 0.417 0.583 41 H 0.122 0.878 42 H 0.158 0.842 43 H 0.178 0.822 44 H 0.170 0.830 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.789 7.112 15.467 26.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.101 4.101 3 H 0.099 0.901 4 C -0.163 4.163 5 C 0.047 3.953 6 N -0.331 5.331 7 C -0.399 4.399 8 H 0.067 0.933 9 C -0.238 4.238 10 N -0.574 5.574 11 Si 0.792 3.208 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.202 1.202 15 C 0.017 3.983 16 C 0.045 3.955 17 H 0.072 0.928 18 N -0.357 5.357 19 C 0.295 3.705 20 O -0.464 6.464 21 C -0.132 4.132 22 C -0.118 4.118 23 C -0.063 4.063 24 C -0.175 4.175 25 C 0.094 3.906 26 F -0.117 7.117 27 C -0.224 4.224 28 C 0.098 3.902 29 F -0.121 7.121 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.022 0.978 37 H 0.062 0.938 38 H 0.037 0.963 39 H 0.043 0.957 40 H 0.255 0.745 41 H 0.140 0.860 42 H 0.176 0.824 43 H 0.196 0.804 44 H 0.188 0.812 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -19.405 6.291 15.403 25.562 hybrid contribution 1.705 -0.755 -0.077 1.866 sum -17.701 5.536 15.326 24.059 Atomic orbital electron populations 1.21765 0.92529 1.01707 1.03073 1.21229 0.97239 0.99234 0.92448 0.90149 1.22086 0.96491 0.99820 0.97925 1.20720 0.90875 0.95328 0.88414 1.44221 1.48237 1.39715 1.00938 1.19375 1.10690 1.03742 1.06112 0.93250 1.25693 0.98060 1.00465 0.99603 1.70158 1.38438 1.30476 1.18280 0.85326 0.77638 0.80000 0.77852 1.20701 1.21321 1.20240 1.21230 0.93489 0.95481 0.88130 1.21166 0.93148 0.96347 0.84811 0.92752 1.45849 1.65493 1.15138 1.09262 1.21174 0.77286 0.86814 0.85232 1.90757 1.51383 1.18933 1.85285 1.20688 1.07210 0.97275 0.88020 1.19714 0.93201 1.01519 0.97387 1.21171 0.97691 0.92215 0.95234 1.21522 0.98598 1.01002 0.96374 1.17493 0.94817 0.90736 0.87592 1.91512 1.97040 1.66520 1.56617 1.21121 1.00121 1.00224 1.00905 1.17457 0.82422 0.94145 0.96207 1.91499 1.48753 1.78602 1.93235 0.93888 0.90579 0.91089 0.93692 0.89890 0.92790 0.97761 0.93797 0.96320 0.95749 0.74538 0.86039 0.82431 0.80423 0.81234 0.83213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 9.02 71.98 0.65 -2.06 16 2 C -0.08 -2.36 2.27 -10.77 -0.02 -2.38 16 3 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 4 C -0.12 -4.43 5.36 30.67 0.16 -4.26 16 5 C 0.17 8.29 5.31 86.36 0.46 8.74 16 6 N -0.61 -32.24 2.99 -699.09 -2.09 -34.33 16 7 C -0.27 -15.99 9.59 84.03 0.81 -15.18 16 8 H 0.05 3.03 7.89 -2.91 -0.02 3.00 16 9 C -0.04 -2.46 4.91 84.86 0.42 -2.04 16 10 N -0.93 -55.82 11.19 21.65 0.24 -55.57 16 11 Si 0.96 47.09 29.59 68.60 2.03 49.12 16 12 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 13 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 14 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 15 C 0.14 6.49 6.09 86.36 0.53 7.01 16 16 C 0.15 5.22 2.06 45.07 0.09 5.31 16 17 H 0.05 2.25 7.58 -2.39 -0.02 2.23 16 18 N -0.71 -17.22 4.37 -442.17 -1.93 -19.15 16 19 C 0.51 13.53 7.79 87.65 0.68 14.21 16 20 O -0.58 -22.56 15.70 -3.07 -0.05 -22.60 16 21 C -0.09 -1.45 5.60 29.10 0.16 -1.28 16 22 C -0.12 -2.29 4.38 -19.81 -0.09 -2.38 16 23 C -0.05 -0.66 9.67 22.26 0.22 -0.45 16 24 C -0.16 -2.41 10.03 22.32 0.22 -2.19 16 25 C 0.11 2.29 7.30 22.37 0.16 2.45 16 26 F -0.14 -2.92 17.27 44.97 0.78 -2.14 16 27 C -0.20 -4.62 10.01 22.35 0.22 -4.39 16 28 C 0.12 2.86 7.24 22.37 0.16 3.03 16 29 F -0.14 -4.01 16.57 44.97 0.74 -3.26 16 30 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 1.14 7.35 -2.39 -0.02 1.12 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.05 2.97 6.04 -2.39 -0.01 2.95 16 36 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 37 H 0.25 14.60 8.31 -92.71 -0.77 13.82 16 38 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.02 1.22 7.94 -2.39 -0.02 1.20 16 40 H 0.42 6.53 8.31 -92.71 -0.77 5.76 16 41 H 0.12 1.60 7.79 -2.38 -0.02 1.58 16 42 H 0.16 0.91 8.05 -2.38 -0.02 0.89 16 43 H 0.18 1.28 8.06 -2.91 -0.02 1.26 16 44 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 45 H 0.15 3.09 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -78.97 376.04 4.80 -74.17 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 0.24 Total: 9.63 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 4.84 Total: 4.14 kcal Atomic # 7 Polarization: -105.27 SS G_CDS: -3.78 Total: -109.05 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.05 Total: -22.60 kcal Atomic # 9 Polarization: -6.92 SS G_CDS: 1.52 Total: -5.40 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -78.97 4.80 -74.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966232698.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.766 kcal (2) G-P(sol) polarization free energy of solvation -78.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds