Wall clock time and date at job start Tue Mar 31 2020 22:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.45010 * 2 1 4 4 C 1.53045 * 109.45783 * 119.96053 * 2 1 3 5 5 C 1.53187 * 109.31161 * 181.38350 * 4 2 1 6 6 N 1.46927 * 108.78219 * 305.36857 * 5 4 2 7 7 C 1.36926 * 120.63289 * 233.63171 * 6 5 4 8 8 H 1.07996 * 120.00534 * 27.65979 * 7 6 5 9 9 C 1.38813 * 120.00046 * 207.65913 * 7 6 5 10 10 N 1.31625 * 119.99771 * 17.36267 * 9 7 6 11 11 Si 1.86800 * 120.00259 * 197.35951 * 9 7 6 12 12 H 1.48501 * 109.47084 * 60.00337 * 11 9 7 13 13 H 1.48499 * 109.47092 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47389 * 300.00339 * 11 9 7 15 15 C 1.46927 * 118.73407 * 53.60501 * 6 5 4 16 16 C 1.53041 * 109.46205 * 240.02993 * 2 1 3 17 17 H 1.08995 * 109.52265 * 298.58635 * 16 2 1 18 18 N 1.46502 * 109.49496 * 58.66479 * 16 2 1 19 19 C 1.34771 * 119.99831 * 204.84140 * 18 16 2 20 20 O 1.21282 * 120.00152 * 359.97438 * 19 18 16 21 21 C 1.50700 * 120.00131 * 180.02562 * 19 18 16 22 22 C 1.50698 * 109.47172 * 179.97438 * 21 19 18 23 23 C 1.38236 * 119.98875 * 100.00036 * 22 21 19 24 24 C 1.38180 * 120.05168 * 180.27507 * 23 22 21 25 25 C 1.38496 * 120.02632 * 359.49002 * 24 23 22 26 26 F 1.35092 * 120.01649 * 180.25545 * 25 24 23 27 27 C 1.38402 * 119.97229 * 0.50924 * 25 24 23 28 28 C 1.38443 * 119.94977 * 359.74360 * 27 25 24 29 29 F 1.35097 * 120.01476 * 179.97438 * 28 27 25 30 30 H 1.09003 * 109.47103 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47269 * 299.96987 * 1 2 3 32 32 H 1.08997 * 109.47294 * 59.96900 * 1 2 3 33 33 H 1.09001 * 109.49290 * 61.43684 * 4 2 1 34 34 H 1.08999 * 109.52701 * 301.35469 * 4 2 1 35 35 H 1.08995 * 109.58969 * 185.57907 * 5 4 2 36 36 H 1.09006 * 109.70127 * 65.22389 * 5 4 2 37 37 H 0.97003 * 120.00006 * 179.97438 * 10 9 7 38 38 H 1.09002 * 109.58906 * 186.60847 * 15 6 5 39 39 H 1.09005 * 109.58985 * 66.18129 * 15 6 5 40 40 H 0.96999 * 119.99651 * 24.83446 * 18 16 2 41 41 H 1.09002 * 109.47165 * 59.99489 * 21 19 18 42 42 H 1.09006 * 109.46729 * 299.99407 * 21 19 18 43 43 H 1.07996 * 119.97115 * 359.97438 * 23 22 21 44 44 H 1.08000 * 119.99177 * 179.73780 * 24 23 22 45 45 H 1.07996 * 120.02857 * 179.77349 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7207 1.2502 5 6 3.5713 -0.6885 1.2644 6 7 4.0679 -1.2488 0.0002 7 6 4.9757 -2.2739 0.0003 8 1 5.0086 -2.9662 0.8285 9 6 5.8539 -2.4234 -1.0643 10 7 6.0603 -1.4217 -1.8929 11 14 6.7429 -4.0461 -1.3211 12 1 5.7474 -5.1295 -1.5225 13 1 7.6170 -3.9478 -2.5175 14 1 7.5714 -4.3510 -0.1270 15 6 3.5714 -0.6886 -1.2641 16 6 2.0399 -0.7208 -1.2500 17 1 1.6978 -1.7556 -1.2388 18 7 1.5257 -0.0488 -2.4459 19 6 1.4002 -0.7315 -3.6011 20 8 1.7135 -1.9021 -3.6508 21 6 0.8718 -0.0401 -4.8315 22 6 0.8312 -1.0170 -5.9783 23 6 -0.3613 -1.6222 -6.3284 24 6 -0.3989 -2.5224 -7.3761 25 6 0.7563 -2.8113 -8.0834 26 9 0.7183 -3.6875 -9.1109 27 6 1.9508 -2.2059 -7.7337 28 6 1.9883 -1.3082 -6.6805 29 9 3.1536 -0.7169 -6.3378 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5133 0.8902 32 1 -0.3634 0.5143 -0.8897 33 1 1.6978 -1.7555 1.2384 34 1 1.6572 -0.2211 2.1402 35 1 3.9416 -1.2844 2.0985 36 1 3.9163 0.3402 1.3686 37 1 6.6742 -1.5260 -2.6366 38 1 3.9417 -1.2846 -2.0983 39 1 3.9143 0.3409 -1.3673 40 1 1.2754 0.8875 -2.4062 41 1 1.5247 0.7941 -5.0881 42 1 -0.1337 0.3323 -4.6353 43 1 -1.2632 -1.3950 -5.7796 44 1 -1.3302 -2.9980 -7.6461 45 1 2.8528 -2.4333 -8.2823 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966232699.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:37 Heat of formation + Delta-G solvation = -109.259464 kcal Electronic energy + Delta-G solvation = -29984.513348 eV Core-core repulsion = 25637.204112 eV Total energy + Delta-G solvation = -4347.309236 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.08475 -50.05042 -41.15148 -39.90155 -38.93215 -36.06967 -34.65706 -33.75710 -32.81244 -31.82008 -30.67273 -29.05011 -28.13136 -25.86728 -24.26396 -24.12273 -22.95343 -22.59031 -21.40808 -20.76393 -19.26364 -18.78553 -18.32446 -18.06351 -17.43448 -16.95915 -16.91625 -16.71595 -16.35320 -16.27032 -15.94470 -15.59746 -15.43845 -15.26506 -15.01862 -14.91059 -14.79346 -14.33950 -14.11484 -13.90240 -13.57085 -13.28335 -13.05708 -13.00785 -12.93807 -12.75762 -12.70150 -12.59266 -12.38368 -12.32641 -12.16787 -11.91711 -11.61791 -11.43409 -11.18561 -10.83771 -10.56542 -10.08068 -10.01059 -9.64573 -8.70863 -7.91905 -5.37045 -0.12015 0.00342 1.36105 1.42387 1.46578 1.74470 2.13442 2.43857 2.54104 2.86083 3.24516 3.37545 3.51031 3.56497 3.72408 3.85400 3.87276 4.01050 4.07255 4.11532 4.21464 4.43540 4.50800 4.52421 4.61436 4.69640 4.75036 4.79747 4.85388 4.92528 4.94834 5.01046 5.02642 5.14001 5.19276 5.20957 5.24379 5.31804 5.49611 5.51002 5.54159 5.60282 5.74793 5.81765 6.33655 6.70322 7.09812 7.42978 7.83939 8.32037 9.12193 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010463 B = 0.003932 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.489683 B = 7119.845317 C = 9014.919488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.085 4.085 3 H 0.079 0.921 4 C -0.116 4.116 5 C 0.135 3.865 6 N -0.610 5.610 7 C -0.266 4.266 8 H 0.068 0.932 9 C -0.048 4.048 10 N -0.929 5.929 11 Si 0.957 3.043 12 H -0.286 1.286 13 H -0.295 1.295 14 H -0.264 1.264 15 C 0.178 3.822 16 C 0.143 3.857 17 H 0.047 0.953 18 N -0.706 5.706 19 C 0.504 3.496 20 O -0.585 6.585 21 C -0.092 4.092 22 C -0.118 4.118 23 C -0.043 4.043 24 C -0.154 4.154 25 C 0.114 3.886 26 F -0.137 7.137 27 C -0.208 4.208 28 C 0.115 3.885 29 F -0.146 7.146 30 H 0.041 0.959 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.096 0.904 35 H 0.053 0.947 36 H 0.021 0.979 37 H 0.246 0.754 38 H 0.040 0.960 39 H -0.003 1.003 40 H 0.415 0.585 41 H 0.117 0.883 42 H 0.161 0.839 43 H 0.184 0.816 44 H 0.175 0.825 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.128 7.147 -6.992 22.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.104 4.104 3 H 0.097 0.903 4 C -0.156 4.156 5 C 0.010 3.990 6 N -0.334 5.334 7 C -0.396 4.396 8 H 0.085 0.915 9 C -0.244 4.244 10 N -0.575 5.575 11 Si 0.785 3.215 12 H -0.213 1.213 13 H -0.222 1.222 14 H -0.189 1.189 15 C 0.051 3.949 16 C 0.036 3.964 17 H 0.065 0.935 18 N -0.358 5.358 19 C 0.291 3.709 20 O -0.465 6.465 21 C -0.131 4.131 22 C -0.119 4.119 23 C -0.061 4.061 24 C -0.173 4.173 25 C 0.095 3.905 26 F -0.116 7.116 27 C -0.227 4.227 28 C 0.095 3.905 29 F -0.125 7.125 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.114 0.886 35 H 0.072 0.928 36 H 0.039 0.961 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.015 0.985 40 H 0.252 0.748 41 H 0.135 0.865 42 H 0.179 0.821 43 H 0.201 0.799 44 H 0.192 0.808 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -19.733 6.320 -7.149 21.919 hybrid contribution 1.848 -0.767 -0.620 2.095 sum -17.885 5.553 -7.769 20.274 Atomic orbital electron populations 1.21759 0.92599 1.01650 1.03045 1.21266 0.97222 0.99243 0.92662 0.90291 1.21968 0.95472 1.00232 0.97889 1.21181 0.93806 0.96096 0.87899 1.44243 1.48186 1.39790 1.01173 1.19460 1.09819 1.04081 1.06254 0.91474 1.25735 0.98607 1.00116 0.99895 1.70161 1.38384 1.30776 1.18132 0.85494 0.78123 0.80449 0.77435 1.21306 1.22163 1.18912 1.20806 0.90292 0.94734 0.89075 1.21410 0.94346 0.95818 0.84842 0.93503 1.45830 1.65420 1.14998 1.09517 1.21192 0.77387 0.86887 0.85399 1.90754 1.51193 1.19255 1.85268 1.20691 1.07154 0.97213 0.88060 1.19746 0.92783 1.01670 0.97706 1.21206 0.97585 0.92544 0.94775 1.21535 0.98269 1.00579 0.96895 1.17470 0.94407 0.90972 0.87659 1.91505 1.97184 1.66513 1.56389 1.21118 0.99942 1.00967 1.00718 1.17576 0.81768 0.95218 0.95899 1.91512 1.47256 1.82105 1.91631 0.93946 0.90578 0.91152 0.93287 0.88569 0.92830 0.96105 0.94525 0.94144 0.98518 0.74829 0.86513 0.82120 0.79869 0.80780 0.83637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.02 71.98 0.65 -2.05 16 2 C -0.08 -2.42 2.27 -10.76 -0.02 -2.44 16 3 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 4 C -0.12 -3.62 5.36 30.67 0.16 -3.46 16 5 C 0.14 5.54 6.52 86.36 0.56 6.10 16 6 N -0.61 -32.10 2.99 -699.10 -2.09 -34.19 16 7 C -0.27 -15.62 9.58 84.04 0.81 -14.81 16 8 H 0.07 3.81 7.89 -2.91 -0.02 3.79 16 9 C -0.05 -2.89 4.91 84.86 0.42 -2.47 16 10 N -0.93 -59.32 11.19 21.65 0.24 -59.08 16 11 Si 0.96 49.01 29.59 68.60 2.03 51.04 16 12 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 13 H -0.30 -15.23 7.11 99.48 0.71 -14.53 16 14 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16 15 C 0.18 9.06 4.89 86.36 0.42 9.48 16 16 C 0.14 5.42 2.06 45.07 0.09 5.52 16 17 H 0.05 2.13 7.58 -2.39 -0.02 2.11 16 18 N -0.71 -20.85 4.37 -442.17 -1.93 -22.78 16 19 C 0.50 16.36 7.78 87.66 0.68 17.04 16 20 O -0.59 -26.43 15.61 -3.04 -0.05 -26.48 16 21 C -0.09 -1.88 5.55 29.10 0.16 -1.71 16 22 C -0.12 -2.82 4.43 -19.81 -0.09 -2.91 16 23 C -0.04 -0.75 9.66 22.26 0.22 -0.53 16 24 C -0.15 -2.74 10.02 22.32 0.22 -2.51 16 25 C 0.11 2.69 7.30 22.37 0.16 2.85 16 26 F -0.14 -3.26 17.27 44.97 0.78 -2.49 16 27 C -0.21 -5.71 10.01 22.36 0.22 -5.48 16 28 C 0.11 3.47 7.12 22.37 0.16 3.63 16 29 F -0.15 -5.32 16.66 44.97 0.75 -4.57 16 30 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 1.15 7.35 -2.39 -0.02 1.13 16 33 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.05 2.16 7.93 -2.39 -0.02 2.15 16 36 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.25 15.45 8.31 -92.71 -0.77 14.67 16 38 H 0.04 2.50 6.04 -2.39 -0.01 2.49 16 39 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 40 H 0.41 8.42 8.30 -92.71 -0.77 7.65 16 41 H 0.12 2.18 7.94 -2.39 -0.02 2.16 16 42 H 0.16 1.49 8.00 -2.38 -0.02 1.47 16 43 H 0.18 1.58 8.04 -2.91 -0.02 1.56 16 44 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 45 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -83.93 375.99 4.80 -79.13 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.24 Total: 13.17 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 4.83 Total: 6.25 kcal Atomic # 7 Polarization: -112.26 SS G_CDS: -3.78 Total: -116.05 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.05 Total: -26.48 kcal Atomic # 9 Polarization: -8.58 SS G_CDS: 1.53 Total: -7.05 kcal Atomic # 14 Polarization: 49.01 SS G_CDS: 2.03 Total: 51.04 kcal Total: -83.93 4.80 -79.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966232699.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.131 kcal (2) G-P(sol) polarization free energy of solvation -83.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds