Wall clock time and date at job start Tue Mar 31 2020 22:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.44725 * 2 1 4 4 C 1.53042 * 109.45471 * 119.96150 * 2 1 3 5 5 C 1.53197 * 109.31032 * 181.38350 * 4 2 1 6 6 N 1.46927 * 108.77524 * 305.37119 * 5 4 2 7 7 C 1.36937 * 120.62527 * 233.58012 * 6 5 4 8 8 H 1.08009 * 119.99845 * 151.85368 * 7 6 5 9 9 C 1.38816 * 120.00342 * 331.85724 * 7 6 5 10 10 N 1.31612 * 119.99500 * 343.06174 * 9 7 6 11 11 Si 1.86794 * 120.00031 * 163.06350 * 9 7 6 12 12 H 1.48504 * 109.47182 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47444 * 119.99722 * 11 9 7 14 14 H 1.48500 * 109.47244 * 239.99848 * 11 9 7 15 15 C 1.46923 * 118.74172 * 53.60422 * 6 5 4 16 16 C 1.53041 * 109.46053 * 240.02654 * 2 1 3 17 17 H 1.09001 * 109.51907 * 58.65151 * 16 2 1 18 18 N 1.46494 * 109.50103 * 298.56870 * 16 2 1 19 19 C 1.34782 * 119.99925 * 155.15801 * 18 16 2 20 20 O 1.21278 * 120.00055 * 0.02562 * 19 18 16 21 21 C 1.50696 * 119.99873 * 179.97438 * 19 18 16 22 22 C 1.50704 * 109.47244 * 180.02562 * 21 19 18 23 23 C 1.38221 * 119.98353 * 264.72414 * 22 21 19 24 24 C 1.38192 * 120.04755 * 179.76583 * 23 22 21 25 25 C 1.38492 * 120.02216 * 0.50611 * 24 23 22 26 26 F 1.35106 * 120.01092 * 179.76499 * 25 24 23 27 27 C 1.38396 * 119.97816 * 359.74961 * 25 24 23 28 28 C 1.38437 * 119.94852 * 359.97438 * 27 25 24 29 29 F 1.35098 * 120.01530 * 180.02562 * 28 27 25 30 30 H 1.08999 * 109.47810 * 300.03630 * 1 2 3 31 31 H 1.09002 * 109.47171 * 60.03808 * 1 2 3 32 32 H 1.09004 * 109.47174 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.50156 * 61.44054 * 4 2 1 34 34 H 1.08996 * 109.50157 * 301.33709 * 4 2 1 35 35 H 1.09008 * 109.58360 * 65.15345 * 5 4 2 36 36 H 1.09000 * 109.58891 * 185.43629 * 5 4 2 37 37 H 0.97002 * 119.99590 * 180.02562 * 10 9 7 38 38 H 1.09002 * 109.58632 * 66.18116 * 15 6 5 39 39 H 1.08999 * 109.58480 * 186.45895 * 15 6 5 40 40 H 0.97004 * 119.99829 * 335.16463 * 18 16 2 41 41 H 1.09006 * 109.47275 * 300.00498 * 21 19 18 42 42 H 1.08996 * 109.47551 * 60.00209 * 21 19 18 43 43 H 1.07999 * 119.97928 * 0.02562 * 23 22 21 44 44 H 1.08001 * 119.98788 * 180.25587 * 24 23 22 45 45 H 1.07999 * 120.02507 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0277 0.0000 4 6 2.0397 -0.7207 1.2502 5 6 3.5713 -0.6886 1.2644 6 7 4.0678 -1.2488 0.0001 7 6 4.9764 -2.2734 0.0003 8 1 5.0045 -2.9703 -0.8244 9 6 5.8613 -2.4162 1.0602 10 7 6.0657 -1.4125 1.8866 11 14 6.7619 -4.0330 1.3136 12 1 6.3592 -4.9949 0.2563 13 1 8.2267 -3.8006 1.2401 14 1 6.4152 -4.5892 2.6462 15 6 3.5713 -0.6887 -1.2641 16 6 2.0399 -0.7209 -1.2500 17 1 1.6573 -0.2214 -2.1400 18 7 1.5802 -2.1118 -1.2341 19 6 1.4547 -2.7933 -2.3901 20 8 1.7228 -2.2553 -3.4434 21 6 0.9823 -4.2242 -2.3737 22 6 0.9299 -4.7522 -3.7843 23 6 -0.2581 -4.7199 -4.4902 24 6 -0.3065 -5.1992 -5.7854 25 6 0.8329 -5.7221 -6.3739 26 9 0.7841 -6.1949 -7.6385 27 6 2.0216 -5.7597 -5.6662 28 6 2.0704 -5.2740 -4.3707 29 9 3.2302 -5.3096 -3.6788 30 1 -0.3635 0.5144 0.8896 31 1 -0.3633 0.5132 -0.8903 32 1 -0.3634 -1.0277 0.0005 33 1 1.6978 -1.7556 1.2385 34 1 1.6571 -0.2206 2.1399 35 1 3.9142 0.3410 1.3674 36 1 3.9415 -1.2824 2.1001 37 1 6.6843 -1.5122 2.6270 38 1 3.9143 0.3408 -1.3673 39 1 3.9438 -1.2831 -2.0984 40 1 1.3660 -2.5422 -0.3916 41 1 1.6733 -4.8282 -1.7855 42 1 -0.0119 -4.2736 -1.9298 43 1 -1.1481 -4.3160 -4.0307 44 1 -1.2343 -5.1698 -6.3375 45 1 2.9108 -6.1669 -6.1245 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966232700.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:41 Heat of formation + Delta-G solvation = -87.341158 kcal Electronic energy + Delta-G solvation = -30150.377503 eV Core-core repulsion = 25804.018716 eV Total energy + Delta-G solvation = -4346.358787 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.15290 -48.95713 -39.96828 -38.89881 -37.48983 -34.22227 -32.92774 -32.55016 -31.08285 -30.94092 -29.43365 -27.69840 -26.84391 -24.07769 -23.35920 -22.64913 -21.94792 -21.11703 -20.35811 -18.70962 -18.30591 -17.36788 -17.16541 -16.57627 -16.17330 -15.95707 -15.66438 -15.29289 -15.15129 -14.80164 -14.68244 -14.44796 -14.00344 -13.99457 -13.82686 -13.44759 -13.38592 -13.12377 -12.83152 -12.56597 -12.11485 -12.06112 -11.94136 -11.80570 -11.61355 -11.51174 -11.39024 -11.15473 -10.84794 -10.75088 -10.34980 -10.25839 -9.95943 -9.65777 -9.55816 -9.48671 -9.18499 -8.71127 -8.64365 -8.37220 -6.64474 -5.79004 -3.20878 0.79066 0.88284 2.98576 3.13928 3.36006 3.45038 3.47728 3.70808 3.75686 4.28389 4.38234 4.46053 4.49904 4.66224 4.93736 5.07132 5.21478 5.25973 5.27782 5.33600 5.41307 5.42738 5.55203 5.64580 5.66889 5.80407 5.86679 5.87837 5.93026 6.01051 6.06239 6.18327 6.20584 6.39339 6.42199 6.56739 6.61650 6.63435 6.79297 6.85209 7.07984 7.30920 7.62674 7.81797 7.95263 8.45114 8.62413 9.22076 9.84652 10.41320 11.29333 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011861 B = 0.003778 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.028823 B = 7410.027880 C = 9219.578574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 H 0.077 0.923 4 C -0.136 4.136 5 C 0.168 3.832 6 N -0.586 5.586 7 C -0.245 4.245 8 H 0.064 0.936 9 C 0.003 3.997 10 N -0.903 5.903 11 Si 0.898 3.102 12 H -0.277 1.277 13 H -0.291 1.291 14 H -0.289 1.289 15 C 0.134 3.866 16 C 0.136 3.864 17 H 0.077 0.923 18 N -0.698 5.698 19 C 0.516 3.484 20 O -0.546 6.546 21 C -0.106 4.106 22 C -0.102 4.102 23 C -0.051 4.051 24 C -0.165 4.165 25 C 0.124 3.876 26 F -0.135 7.135 27 C -0.192 4.192 28 C 0.149 3.851 29 F -0.121 7.121 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.018 0.982 36 H 0.088 0.912 37 H 0.252 0.748 38 H 0.024 0.976 39 H 0.059 0.941 40 H 0.399 0.601 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.142 0.858 44 H 0.141 0.859 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.251 -5.524 -8.300 19.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.095 0.905 4 C -0.176 4.176 5 C 0.042 3.958 6 N -0.309 5.309 7 C -0.375 4.375 8 H 0.082 0.918 9 C -0.196 4.196 10 N -0.548 5.548 11 Si 0.728 3.272 12 H -0.202 1.202 13 H -0.218 1.218 14 H -0.216 1.216 15 C 0.007 3.993 16 C 0.030 3.970 17 H 0.095 0.905 18 N -0.349 5.349 19 C 0.301 3.699 20 O -0.423 6.423 21 C -0.146 4.146 22 C -0.104 4.104 23 C -0.069 4.069 24 C -0.184 4.184 25 C 0.105 3.895 26 F -0.114 7.114 27 C -0.212 4.212 28 C 0.129 3.871 29 F -0.100 7.100 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.036 0.964 36 H 0.106 0.894 37 H 0.062 0.938 38 H 0.042 0.958 39 H 0.077 0.923 40 H 0.235 0.765 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.159 0.841 44 H 0.159 0.841 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.873 -5.142 -8.930 18.925 hybrid contribution 0.806 -1.062 0.528 1.434 sum -15.067 -6.204 -8.402 18.333 Atomic orbital electron populations 1.21843 0.96032 1.01265 1.00923 1.21315 0.94539 0.99883 0.95552 0.90492 1.22259 1.00963 0.98870 0.95479 1.20802 0.87158 0.97360 0.90434 1.44002 1.48182 1.39596 0.99123 1.19194 1.09442 1.02598 1.06238 0.91846 1.25012 0.97162 0.97319 1.00084 1.70038 1.37609 1.28884 1.18266 0.86288 0.79408 0.83882 0.77660 1.20227 1.21766 1.21629 1.21288 0.90428 0.96930 0.90659 1.21532 0.97195 0.80826 0.97424 0.90533 1.45858 1.66654 1.13971 1.08375 1.20164 0.78020 0.87455 0.84250 1.90688 1.50748 1.70021 1.30892 1.20620 1.04697 0.95140 0.94094 1.19443 0.92809 1.01142 0.96965 1.20710 0.97161 0.96125 0.92942 1.21105 0.98080 1.02742 0.96459 1.17270 0.94153 0.98253 0.79832 1.91518 1.97071 1.86014 1.36751 1.20994 0.99145 1.06616 0.94440 1.17139 0.81892 0.98296 0.89728 1.91592 1.46065 1.93884 1.78427 0.93029 0.93304 0.93093 0.93030 0.92930 0.96418 0.89420 0.93779 0.95783 0.92269 0.76548 0.87283 0.87582 0.84066 0.84127 0.83492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.05 37.16 0.34 -1.39 16 2 C -0.09 -1.41 2.48 -90.58 -0.22 -1.64 16 3 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 4 C -0.14 -2.29 5.20 -26.61 -0.14 -2.43 16 5 C 0.17 3.76 5.30 -3.71 -0.02 3.74 16 6 N -0.59 -14.04 2.91 -172.31 -0.50 -14.54 16 7 C -0.24 -6.60 9.58 -15.06 -0.14 -6.74 16 8 H 0.06 1.75 7.89 -52.48 -0.41 1.34 16 9 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 10 N -0.90 -25.74 11.19 55.49 0.62 -25.12 16 11 Si 0.90 21.61 29.59 -169.99 -5.03 16.58 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 C 0.13 2.86 6.12 -3.71 -0.02 2.84 16 16 C 0.14 2.31 2.24 -67.82 -0.15 2.16 16 17 H 0.08 1.32 7.58 -51.93 -0.39 0.92 16 18 N -0.70 -10.84 4.25 -53.70 -0.23 -11.06 16 19 C 0.52 8.17 7.79 -10.98 -0.09 8.08 16 20 O -0.55 -10.57 15.70 5.56 0.09 -10.48 16 21 C -0.11 -1.26 5.60 -29.03 -0.16 -1.42 16 22 C -0.10 -1.27 4.38 -104.55 -0.46 -1.72 16 23 C -0.05 -0.51 9.67 -39.60 -0.38 -0.89 16 24 C -0.16 -1.60 10.03 -39.50 -0.40 -1.99 16 25 C 0.12 1.40 7.30 -39.43 -0.29 1.11 16 26 F -0.14 -1.53 17.27 2.25 0.04 -1.49 16 27 C -0.19 -2.35 10.01 -39.45 -0.39 -2.75 16 28 C 0.15 2.07 7.24 -39.43 -0.29 1.79 16 29 F -0.12 -1.98 16.57 2.25 0.04 -1.94 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.58 7.54 -51.93 -0.39 0.19 16 33 H 0.05 0.84 6.40 -51.93 -0.33 0.51 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 36 H 0.09 2.22 6.07 -51.93 -0.31 1.90 16 37 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 1.38 7.93 -51.93 -0.41 0.97 16 40 H 0.40 5.69 6.64 -40.82 -0.27 5.42 16 41 H 0.11 1.32 7.79 -51.93 -0.40 0.92 16 42 H 0.11 0.87 8.05 -51.93 -0.42 0.45 16 43 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 44 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 45 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 372.91 15.07 5.62 5.62 Total: -1.00 -31.51 372.91 -8.55 -40.06 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -6.29 Total: 3.65 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -2.90 Total: -1.27 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: -0.11 Total: -50.73 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.08 Total: -3.43 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.51 -8.55 -40.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966232700.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.282 kcal (2) G-P(sol) polarization free energy of solvation -31.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds