Wall clock time and date at job start Tue Mar 31 2020 22:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.44725 * 2 1 4 4 C 1.53042 * 109.45471 * 119.96150 * 2 1 3 5 5 C 1.53197 * 109.31032 * 181.38350 * 4 2 1 6 6 N 1.46927 * 108.77524 * 305.37119 * 5 4 2 7 7 C 1.36937 * 120.62527 * 233.58012 * 6 5 4 8 8 H 1.08009 * 119.99845 * 151.85368 * 7 6 5 9 9 C 1.38816 * 120.00342 * 331.85724 * 7 6 5 10 10 N 1.31612 * 119.99500 * 343.06174 * 9 7 6 11 11 Si 1.86794 * 120.00031 * 163.06350 * 9 7 6 12 12 H 1.48504 * 109.47182 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47444 * 119.99722 * 11 9 7 14 14 H 1.48500 * 109.47244 * 239.99848 * 11 9 7 15 15 C 1.46923 * 118.74172 * 53.60422 * 6 5 4 16 16 C 1.53041 * 109.46053 * 240.02654 * 2 1 3 17 17 H 1.09001 * 109.51907 * 58.65151 * 16 2 1 18 18 N 1.46494 * 109.50103 * 298.56870 * 16 2 1 19 19 C 1.34782 * 119.99925 * 155.15801 * 18 16 2 20 20 O 1.21278 * 120.00055 * 0.02562 * 19 18 16 21 21 C 1.50696 * 119.99873 * 179.97438 * 19 18 16 22 22 C 1.50704 * 109.47244 * 180.02562 * 21 19 18 23 23 C 1.38221 * 119.98353 * 264.72414 * 22 21 19 24 24 C 1.38192 * 120.04755 * 179.76583 * 23 22 21 25 25 C 1.38492 * 120.02216 * 0.50611 * 24 23 22 26 26 F 1.35106 * 120.01092 * 179.76499 * 25 24 23 27 27 C 1.38396 * 119.97816 * 359.74961 * 25 24 23 28 28 C 1.38437 * 119.94852 * 359.97438 * 27 25 24 29 29 F 1.35098 * 120.01530 * 180.02562 * 28 27 25 30 30 H 1.08999 * 109.47810 * 300.03630 * 1 2 3 31 31 H 1.09002 * 109.47171 * 60.03808 * 1 2 3 32 32 H 1.09004 * 109.47174 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.50156 * 61.44054 * 4 2 1 34 34 H 1.08996 * 109.50157 * 301.33709 * 4 2 1 35 35 H 1.09008 * 109.58360 * 65.15345 * 5 4 2 36 36 H 1.09000 * 109.58891 * 185.43629 * 5 4 2 37 37 H 0.97002 * 119.99590 * 180.02562 * 10 9 7 38 38 H 1.09002 * 109.58632 * 66.18116 * 15 6 5 39 39 H 1.08999 * 109.58480 * 186.45895 * 15 6 5 40 40 H 0.97004 * 119.99829 * 335.16463 * 18 16 2 41 41 H 1.09006 * 109.47275 * 300.00498 * 21 19 18 42 42 H 1.08996 * 109.47551 * 60.00209 * 21 19 18 43 43 H 1.07999 * 119.97928 * 0.02562 * 23 22 21 44 44 H 1.08001 * 119.98788 * 180.25587 * 24 23 22 45 45 H 1.07999 * 120.02507 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0277 0.0000 4 6 2.0397 -0.7207 1.2502 5 6 3.5713 -0.6886 1.2644 6 7 4.0678 -1.2488 0.0001 7 6 4.9764 -2.2734 0.0003 8 1 5.0045 -2.9703 -0.8244 9 6 5.8613 -2.4162 1.0602 10 7 6.0657 -1.4125 1.8866 11 14 6.7619 -4.0330 1.3136 12 1 6.3592 -4.9949 0.2563 13 1 8.2267 -3.8006 1.2401 14 1 6.4152 -4.5892 2.6462 15 6 3.5713 -0.6887 -1.2641 16 6 2.0399 -0.7209 -1.2500 17 1 1.6573 -0.2214 -2.1400 18 7 1.5802 -2.1118 -1.2341 19 6 1.4547 -2.7933 -2.3901 20 8 1.7228 -2.2553 -3.4434 21 6 0.9823 -4.2242 -2.3737 22 6 0.9299 -4.7522 -3.7843 23 6 -0.2581 -4.7199 -4.4902 24 6 -0.3065 -5.1992 -5.7854 25 6 0.8329 -5.7221 -6.3739 26 9 0.7841 -6.1949 -7.6385 27 6 2.0216 -5.7597 -5.6662 28 6 2.0704 -5.2740 -4.3707 29 9 3.2302 -5.3096 -3.6788 30 1 -0.3635 0.5144 0.8896 31 1 -0.3633 0.5132 -0.8903 32 1 -0.3634 -1.0277 0.0005 33 1 1.6978 -1.7556 1.2385 34 1 1.6571 -0.2206 2.1399 35 1 3.9142 0.3410 1.3674 36 1 3.9415 -1.2824 2.1001 37 1 6.6843 -1.5122 2.6270 38 1 3.9143 0.3408 -1.3673 39 1 3.9438 -1.2831 -2.0984 40 1 1.3660 -2.5422 -0.3916 41 1 1.6733 -4.8282 -1.7855 42 1 -0.0119 -4.2736 -1.9298 43 1 -1.1481 -4.3160 -4.0307 44 1 -1.2343 -5.1698 -6.3375 45 1 2.9108 -6.1669 -6.1245 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966232700.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:40 Heat of formation + Delta-G solvation = -105.159478 kcal Electronic energy + Delta-G solvation = -30151.150163 eV Core-core repulsion = 25804.018716 eV Total energy + Delta-G solvation = -4347.131447 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.07364 -50.02359 -41.22055 -39.94464 -38.85992 -35.97322 -34.17480 -33.63469 -32.97482 -31.80288 -30.91822 -29.04129 -28.10949 -25.79813 -24.23230 -24.00472 -23.15450 -22.73300 -21.51778 -20.24622 -19.24402 -18.67878 -18.30543 -18.13876 -17.19951 -16.95440 -16.83867 -16.67452 -16.33763 -16.27610 -15.95386 -15.66352 -15.45302 -15.25719 -14.92569 -14.80379 -14.70763 -14.55177 -14.13840 -13.85947 -13.48797 -13.24320 -13.02037 -12.99396 -12.91767 -12.74190 -12.71762 -12.64630 -12.37068 -12.31293 -12.16486 -11.89977 -11.61246 -11.26800 -11.07122 -10.86132 -10.55969 -10.06529 -9.92573 -9.63012 -8.62888 -7.87952 -5.32572 -0.09924 0.02005 1.41585 1.45171 1.54921 1.75887 2.19618 2.48920 2.59370 2.86586 3.26060 3.38819 3.53358 3.58474 3.67836 3.83355 3.88949 4.04341 4.07898 4.11638 4.14758 4.44202 4.50948 4.54655 4.65301 4.79198 4.80613 4.81220 4.83283 4.88096 4.94333 5.03726 5.04032 5.04617 5.11076 5.21855 5.26530 5.30516 5.50241 5.53927 5.65386 5.70793 5.76181 5.80594 6.38652 6.72473 7.15970 7.39872 7.85840 8.37036 9.17153 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011861 B = 0.003778 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.028823 B = 7410.027880 C = 9219.578574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.086 4.086 3 H 0.073 0.927 4 C -0.122 4.122 5 C 0.173 3.827 6 N -0.597 5.597 7 C -0.251 4.251 8 H 0.049 0.951 9 C -0.043 4.043 10 N -0.931 5.931 11 Si 0.958 3.042 12 H -0.275 1.275 13 H -0.296 1.296 14 H -0.282 1.282 15 C 0.134 3.866 16 C 0.149 3.851 17 H 0.079 0.921 18 N -0.693 5.693 19 C 0.512 3.488 20 O -0.585 6.585 21 C -0.099 4.099 22 C -0.113 4.113 23 C -0.043 4.043 24 C -0.152 4.152 25 C 0.115 3.885 26 F -0.137 7.137 27 C -0.203 4.203 28 C 0.113 3.887 29 F -0.147 7.147 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.076 0.924 35 H -0.007 1.007 36 H 0.056 0.944 37 H 0.250 0.750 38 H 0.015 0.985 39 H 0.028 0.972 40 H 0.408 0.592 41 H 0.104 0.896 42 H 0.154 0.846 43 H 0.179 0.821 44 H 0.174 0.826 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.902 -6.099 -8.152 22.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.105 4.105 3 H 0.091 0.909 4 C -0.161 4.161 5 C 0.048 3.952 6 N -0.321 5.321 7 C -0.381 4.381 8 H 0.067 0.933 9 C -0.238 4.238 10 N -0.577 5.577 11 Si 0.786 3.214 12 H -0.200 1.200 13 H -0.223 1.223 14 H -0.208 1.208 15 C 0.007 3.993 16 C 0.042 3.958 17 H 0.097 0.903 18 N -0.344 5.344 19 C 0.299 3.701 20 O -0.465 6.465 21 C -0.138 4.138 22 C -0.115 4.115 23 C -0.061 4.061 24 C -0.171 4.171 25 C 0.096 3.904 26 F -0.115 7.115 27 C -0.222 4.222 28 C 0.094 3.906 29 F -0.125 7.125 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.011 0.989 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.033 0.967 39 H 0.047 0.953 40 H 0.245 0.755 41 H 0.122 0.878 42 H 0.171 0.829 43 H 0.197 0.803 44 H 0.191 0.809 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -19.557 -5.728 -8.776 22.188 hybrid contribution 1.986 -0.844 0.378 2.191 sum -17.571 -6.572 -8.398 20.554 Atomic orbital electron populations 1.21745 0.92594 1.02494 1.02202 1.21246 0.97189 0.98896 0.93166 0.90910 1.22066 0.96221 1.00272 0.97536 1.20678 0.91082 0.94903 0.88540 1.44160 1.48136 1.39299 1.00489 1.19287 1.09998 1.03042 1.05778 0.93308 1.25631 0.98142 0.99978 1.00090 1.70171 1.38389 1.30425 1.18708 0.85359 0.77764 0.80557 0.77687 1.19952 1.22297 1.20835 1.21333 0.93898 0.95432 0.88588 1.21238 0.93479 0.82298 0.98791 0.90328 1.45807 1.66238 1.13419 1.08946 1.20866 0.76981 0.88762 0.83469 1.90670 1.52358 1.71244 1.32275 1.20659 1.06979 0.91793 0.94372 1.19674 0.93166 1.01192 0.97443 1.21147 0.97340 0.94888 0.92739 1.21517 0.98525 1.00609 0.96437 1.17445 0.94474 0.98703 0.79810 1.91514 1.97078 1.86111 1.36838 1.21093 1.00055 1.06845 0.94229 1.17546 0.81896 1.00607 0.90594 1.91519 1.47589 1.94382 1.79040 0.91337 0.92503 0.91887 0.91942 0.90549 0.98932 0.92596 0.94083 0.96745 0.95293 0.75545 0.87767 0.82851 0.80321 0.80852 0.83307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 9.05 71.98 0.65 -1.99 16 2 C -0.09 -2.39 2.48 -10.77 -0.03 -2.42 16 3 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 4 C -0.12 -3.86 5.20 30.67 0.16 -3.70 16 5 C 0.17 7.85 5.30 86.36 0.46 8.31 16 6 N -0.60 -29.42 2.91 -699.08 -2.03 -31.46 16 7 C -0.25 -13.91 9.58 84.03 0.81 -13.11 16 8 H 0.05 2.81 7.89 -2.91 -0.02 2.79 16 9 C -0.04 -2.39 4.92 84.86 0.42 -1.97 16 10 N -0.93 -54.50 11.19 21.65 0.24 -54.26 16 11 Si 0.96 45.42 29.59 68.60 2.03 47.45 16 12 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 13 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 14 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 15 C 0.13 5.91 6.12 86.36 0.53 6.44 16 16 C 0.15 4.91 2.24 45.07 0.10 5.02 16 17 H 0.08 2.62 7.58 -2.39 -0.02 2.60 16 18 N -0.69 -20.44 4.25 -442.18 -1.88 -22.32 16 19 C 0.51 15.57 7.79 87.65 0.68 16.25 16 20 O -0.58 -22.53 15.70 -3.02 -0.05 -22.57 16 21 C -0.10 -2.14 5.60 29.10 0.16 -1.98 16 22 C -0.11 -2.62 4.38 -19.82 -0.09 -2.71 16 23 C -0.04 -0.71 9.67 22.25 0.22 -0.49 16 24 C -0.15 -2.46 10.03 22.32 0.22 -2.23 16 25 C 0.12 2.44 7.30 22.37 0.16 2.60 16 26 F -0.14 -2.94 17.27 44.97 0.78 -2.16 16 27 C -0.20 -5.01 10.01 22.35 0.22 -4.79 16 28 C 0.11 3.18 7.24 22.37 0.16 3.35 16 29 F -0.15 -5.04 16.57 44.97 0.74 -4.30 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 1.12 7.54 -2.39 -0.02 1.11 16 33 H 0.06 1.86 6.40 -2.39 -0.02 1.85 16 34 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 35 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 36 H 0.06 2.89 6.07 -2.39 -0.01 2.88 16 37 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 38 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.03 1.41 7.93 -2.39 -0.02 1.39 16 40 H 0.41 10.61 6.64 -92.71 -0.62 9.99 16 41 H 0.10 2.41 7.79 -2.38 -0.02 2.39 16 42 H 0.15 1.80 8.05 -2.39 -0.02 1.78 16 43 H 0.18 1.55 8.06 -2.91 -0.02 1.52 16 44 H 0.17 1.65 8.06 -2.91 -0.02 1.62 16 45 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -72.60 372.91 5.07 -67.52 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.40 Total: 15.52 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 4.84 Total: 6.57 kcal Atomic # 7 Polarization: -104.36 SS G_CDS: -3.67 Total: -108.03 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.05 Total: -22.57 kcal Atomic # 9 Polarization: -7.98 SS G_CDS: 1.52 Total: -6.46 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -72.60 5.07 -67.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966232700.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.636 kcal (2) G-P(sol) polarization free energy of solvation -72.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds