Wall clock time and date at job start Tue Mar 31 2020 22:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.44923 * 2 1 4 4 C 1.53040 * 109.46020 * 240.03217 * 2 1 3 5 5 C 1.53197 * 109.31032 * 178.61198 * 4 2 1 6 6 N 1.46928 * 108.77442 * 54.63803 * 5 4 2 7 7 C 1.36930 * 120.62939 * 126.40815 * 6 5 4 8 8 H 1.07998 * 120.00332 * 331.82640 * 7 6 5 9 9 C 1.38815 * 119.99949 * 151.82315 * 7 6 5 10 10 N 1.31618 * 119.99797 * 343.07871 * 9 7 6 11 11 Si 1.86799 * 119.99977 * 163.08089 * 9 7 6 12 12 H 1.48497 * 109.47135 * 90.00181 * 11 9 7 13 13 H 1.48503 * 109.47242 * 209.99896 * 11 9 7 14 14 H 1.48494 * 109.47320 * 329.99897 * 11 9 7 15 15 C 1.46922 * 118.73736 * 306.38923 * 6 5 4 16 16 C 1.53040 * 109.45767 * 119.96365 * 2 1 3 17 17 H 1.09000 * 109.52983 * 301.35035 * 16 2 1 18 18 N 1.46497 * 109.49877 * 61.43736 * 16 2 1 19 19 C 1.34777 * 120.00470 * 204.83348 * 18 16 2 20 20 O 1.21283 * 119.99728 * 0.02562 * 19 18 16 21 21 C 1.50698 * 120.00351 * 179.97438 * 19 18 16 22 22 C 1.50702 * 109.46852 * 180.02562 * 21 19 18 23 23 C 1.38420 * 120.02495 * 90.00605 * 22 21 19 24 24 F 1.35101 * 120.01163 * 359.95226 * 23 22 21 25 25 C 1.38471 * 119.97112 * 180.22932 * 23 22 21 26 26 C 1.38207 * 120.03032 * 359.49187 * 25 23 22 27 27 C 1.38209 * 120.04676 * 0.50516 * 26 25 23 28 28 C 1.38417 * 120.02533 * 269.97667 * 22 21 19 29 29 F 1.35100 * 120.01287 * 0.05440 * 28 22 21 30 30 H 1.09005 * 109.46865 * 300.03270 * 1 2 3 31 31 H 1.08998 * 109.47172 * 60.03238 * 1 2 3 32 32 H 1.08997 * 109.46854 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.49623 * 58.66552 * 4 2 1 34 34 H 1.08993 * 109.52576 * 298.58089 * 4 2 1 35 35 H 1.09001 * 109.58801 * 294.84727 * 5 4 2 36 36 H 1.08997 * 109.69858 * 174.49559 * 5 4 2 37 37 H 0.96999 * 119.99670 * 179.97438 * 10 9 7 38 38 H 1.09001 * 109.59093 * 293.82012 * 15 6 5 39 39 H 1.09004 * 109.70138 * 173.46483 * 15 6 5 40 40 H 0.97001 * 119.99922 * 24.83617 * 18 16 2 41 41 H 1.08996 * 109.46500 * 60.00583 * 21 19 18 42 42 H 1.08991 * 109.47329 * 300.00267 * 21 19 18 43 43 H 1.08006 * 119.98185 * 179.74894 * 25 23 22 44 44 H 1.07995 * 119.97775 * 180.27966 * 26 25 23 45 45 H 1.07998 * 119.98717 * 179.77024 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2501 5 6 3.5715 -0.6885 -1.2642 6 7 4.0679 -1.2488 0.0001 7 6 4.9764 -2.2733 0.0001 8 1 5.0044 -2.9702 -0.8245 9 6 5.8615 -2.4161 1.0599 10 7 6.0659 -1.4124 1.8864 11 14 6.7624 -4.0328 1.3130 12 1 8.0468 -4.0055 0.5682 13 1 7.0334 -4.2272 2.7601 14 1 5.9233 -5.1508 0.8120 15 6 3.5714 -0.6885 1.2643 16 6 2.0398 -0.7207 1.2501 17 1 1.6573 -0.2212 2.1402 18 7 1.5802 -2.1116 1.2343 19 6 1.4548 -2.7932 2.3903 20 8 1.7220 -2.2548 3.4437 21 6 0.9814 -4.2238 2.3741 22 6 0.9280 -4.7512 3.7847 23 6 -0.2309 -4.6195 4.5301 24 9 -1.3146 -4.0170 3.9935 25 6 -0.2771 -5.1003 5.8278 26 6 0.8297 -5.7208 6.3754 27 6 1.9874 -5.8530 5.6321 28 6 2.0377 -5.3683 4.3359 29 9 3.1696 -5.4971 3.6097 30 1 -0.3633 0.5144 0.8897 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3633 -1.0277 0.0005 33 1 1.6573 -0.2207 -2.1398 34 1 1.6979 -1.7556 -1.2388 35 1 3.9143 0.3410 -1.3673 36 1 3.9438 -1.2829 -2.0985 37 1 6.6841 -1.5123 2.6271 38 1 3.9143 0.3410 1.3674 39 1 3.9417 -1.2824 2.1000 40 1 1.3661 -2.5421 0.3919 41 1 1.6717 -4.8281 1.7857 42 1 -0.0130 -4.2724 1.9305 43 1 -1.1800 -4.9939 6.4110 44 1 0.7913 -6.0995 7.3860 45 1 2.8530 -6.3348 6.0622 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968033414.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:44 Heat of formation + Delta-G solvation = -84.821245 kcal Electronic energy + Delta-G solvation = -30978.605250 eV Core-core repulsion = 26632.355735 eV Total energy + Delta-G solvation = -4346.249515 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.01784 -48.83271 -39.72149 -38.75144 -37.42717 -34.09584 -32.96851 -32.68707 -30.98940 -30.30783 -29.39296 -27.70836 -26.97923 -24.04137 -22.87824 -22.72537 -21.92068 -21.06042 -20.22879 -18.64035 -18.12178 -17.33755 -17.05976 -16.62166 -16.08395 -15.68954 -15.54723 -15.17056 -15.09576 -14.90322 -14.39207 -14.34121 -13.91978 -13.76735 -13.63407 -13.35990 -13.19319 -12.99362 -12.76109 -12.56803 -12.20631 -11.99897 -11.89298 -11.62370 -11.52087 -11.37630 -11.31782 -11.02623 -10.88144 -10.66945 -10.48613 -10.19686 -9.89083 -9.67251 -9.48043 -9.38967 -8.82976 -8.75196 -8.41496 -8.30489 -6.60387 -5.72865 -3.15983 0.93473 0.96756 3.19911 3.27778 3.41322 3.49706 3.50508 3.85897 3.91771 4.40798 4.42642 4.54504 4.62542 4.74490 5.08326 5.19566 5.26576 5.31383 5.37888 5.39488 5.47098 5.50430 5.59134 5.77548 5.87142 5.89709 5.90786 5.95533 6.01622 6.03575 6.08144 6.16967 6.32202 6.39158 6.46832 6.57406 6.69410 6.73519 6.77744 6.91333 7.04016 7.42141 7.71639 7.84624 8.14264 8.50845 8.83956 9.25741 9.90105 10.45884 11.34997 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010245 B = 0.005356 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.394754 B = 5226.981084 C = 7352.927571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.077 0.923 4 C -0.128 4.128 5 C 0.142 3.858 6 N -0.587 5.587 7 C -0.255 4.255 8 H 0.063 0.937 9 C 0.009 3.991 10 N -0.897 5.897 11 Si 0.895 3.105 12 H -0.288 1.288 13 H -0.289 1.289 14 H -0.279 1.279 15 C 0.161 3.839 16 C 0.127 3.873 17 H 0.074 0.926 18 N -0.697 5.697 19 C 0.519 3.481 20 O -0.541 6.541 21 C -0.106 4.106 22 C -0.129 4.129 23 C 0.139 3.861 24 F -0.131 7.131 25 C -0.168 4.168 26 C -0.065 4.065 27 C -0.166 4.166 28 C 0.146 3.854 29 F -0.121 7.121 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.017 0.983 36 H 0.053 0.947 37 H 0.253 0.747 38 H 0.024 0.976 39 H 0.097 0.903 40 H 0.395 0.605 41 H 0.111 0.889 42 H 0.104 0.896 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.900 -6.568 3.125 16.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.095 0.905 4 C -0.168 4.168 5 C 0.016 3.984 6 N -0.309 5.309 7 C -0.384 4.384 8 H 0.080 0.920 9 C -0.191 4.191 10 N -0.541 5.541 11 Si 0.724 3.276 12 H -0.215 1.215 13 H -0.215 1.215 14 H -0.204 1.204 15 C 0.034 3.966 16 C 0.021 3.979 17 H 0.092 0.908 18 N -0.347 5.347 19 C 0.304 3.696 20 O -0.418 6.418 21 C -0.146 4.146 22 C -0.131 4.131 23 C 0.120 3.880 24 F -0.109 7.109 25 C -0.187 4.187 26 C -0.084 4.084 27 C -0.184 4.184 28 C 0.126 3.874 29 F -0.100 7.100 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.035 0.965 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.041 0.959 39 H 0.115 0.885 40 H 0.229 0.771 41 H 0.129 0.871 42 H 0.122 0.878 43 H 0.158 0.842 44 H 0.159 0.841 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -14.564 -6.133 3.958 16.291 hybrid contribution 0.553 -0.876 -0.475 1.139 sum -14.012 -7.009 3.482 16.049 Atomic orbital electron populations 1.21844 0.96016 1.01340 1.00902 1.21310 0.94568 0.99859 0.95541 0.90512 1.22074 0.99240 0.99401 0.96054 1.20927 0.90692 0.96496 0.90300 1.43961 1.48258 1.39605 0.99109 1.19042 1.09780 1.03000 1.06582 0.91963 1.24995 0.97126 0.97110 0.99825 1.69996 1.37171 1.28982 1.17924 0.86421 0.79657 0.84186 0.77305 1.21523 1.21479 1.20427 1.21183 0.86730 0.97681 0.90991 1.21778 0.98878 0.80478 0.96780 0.90770 1.45751 1.66906 1.14017 1.08018 1.20004 0.78016 0.87185 0.84417 1.90690 1.50412 1.69847 1.30864 1.20534 1.04642 0.95752 0.93673 1.19328 0.92986 1.03172 0.97627 1.17120 0.83106 0.95772 0.92021 1.91500 1.52321 1.80897 1.86210 1.21100 1.01014 1.02626 0.93920 1.20779 0.91218 0.96629 0.99727 1.21193 1.00403 1.03910 0.92939 1.17242 0.82053 0.97991 0.90064 1.91599 1.47969 1.93430 1.76965 0.93149 0.93190 0.93053 0.92837 0.92716 0.96529 0.92850 0.93643 0.95851 0.88533 0.77071 0.87114 0.87754 0.84213 0.84102 0.84063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.05 37.16 0.34 -1.54 16 2 C -0.09 -1.48 2.48 -90.58 -0.22 -1.71 16 3 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 4 C -0.13 -2.03 5.19 -26.61 -0.14 -2.17 16 5 C 0.14 2.85 6.52 -3.71 -0.02 2.83 16 6 N -0.59 -14.30 2.91 -172.32 -0.50 -14.80 16 7 C -0.25 -6.93 9.58 -15.06 -0.14 -7.08 16 8 H 0.06 1.66 7.88 -52.49 -0.41 1.25 16 9 C 0.01 0.25 4.92 -17.43 -0.09 0.16 16 10 N -0.90 -26.92 11.19 55.49 0.62 -26.29 16 11 Si 0.89 22.52 29.59 -169.99 -5.03 17.49 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 C 0.16 3.91 4.90 -3.71 -0.02 3.90 16 16 C 0.13 2.45 2.24 -67.81 -0.15 2.30 16 17 H 0.07 1.51 7.58 -51.93 -0.39 1.11 16 18 N -0.70 -12.55 4.25 -53.69 -0.23 -12.78 16 19 C 0.52 9.97 7.79 -10.99 -0.09 9.88 16 20 O -0.54 -12.48 15.70 5.55 0.09 -12.39 16 21 C -0.11 -1.63 5.48 -29.04 -0.16 -1.79 16 22 C -0.13 -2.00 4.38 -104.49 -0.46 -2.46 16 23 C 0.14 1.93 7.24 -39.43 -0.29 1.64 16 24 F -0.13 -1.83 16.48 2.25 0.04 -1.79 16 25 C -0.17 -1.86 10.02 -39.51 -0.40 -2.25 16 26 C -0.07 -0.66 10.04 -39.60 -0.40 -1.06 16 27 C -0.17 -2.06 10.03 -39.50 -0.40 -2.46 16 28 C 0.15 2.31 7.24 -39.43 -0.29 2.03 16 29 F -0.12 -2.25 16.48 2.25 0.04 -2.22 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.65 7.54 -51.93 -0.39 0.26 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.85 6.40 -51.93 -0.33 0.51 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 37 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.10 2.78 6.07 -51.93 -0.31 2.47 16 40 H 0.39 6.29 6.64 -40.82 -0.27 6.02 16 41 H 0.11 1.65 7.64 -51.93 -0.40 1.26 16 42 H 0.10 1.28 7.64 -51.93 -0.40 0.89 16 43 H 0.14 1.17 8.06 -52.48 -0.42 0.74 16 44 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 45 H 0.14 1.47 8.06 -52.49 -0.42 1.04 16 LS Contribution 371.68 15.07 5.60 5.60 Total: -1.00 -33.23 371.68 -8.55 -41.78 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -6.26 Total: 5.17 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -2.91 Total: 0.23 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.11 Total: -53.88 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.09 Total: -12.39 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.07 Total: -4.01 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.03 Total: 17.49 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.23 -8.55 -41.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968033414.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.043 kcal (2) G-P(sol) polarization free energy of solvation -33.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds