Wall clock time and date at job start Tue Mar 31 2020 22:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.44923 * 2 1 4 4 C 1.53040 * 109.46020 * 240.03217 * 2 1 3 5 5 C 1.53197 * 109.31032 * 178.61198 * 4 2 1 6 6 N 1.46928 * 108.77442 * 54.63803 * 5 4 2 7 7 C 1.36930 * 120.62939 * 126.40815 * 6 5 4 8 8 H 1.07998 * 120.00332 * 331.82640 * 7 6 5 9 9 C 1.38815 * 119.99949 * 151.82315 * 7 6 5 10 10 N 1.31618 * 119.99797 * 343.07871 * 9 7 6 11 11 Si 1.86799 * 119.99977 * 163.08089 * 9 7 6 12 12 H 1.48497 * 109.47135 * 90.00181 * 11 9 7 13 13 H 1.48503 * 109.47242 * 209.99896 * 11 9 7 14 14 H 1.48494 * 109.47320 * 329.99897 * 11 9 7 15 15 C 1.46922 * 118.73736 * 306.38923 * 6 5 4 16 16 C 1.53040 * 109.45767 * 119.96365 * 2 1 3 17 17 H 1.09000 * 109.52983 * 301.35035 * 16 2 1 18 18 N 1.46497 * 109.49877 * 61.43736 * 16 2 1 19 19 C 1.34777 * 120.00470 * 204.83348 * 18 16 2 20 20 O 1.21283 * 119.99728 * 0.02562 * 19 18 16 21 21 C 1.50698 * 120.00351 * 179.97438 * 19 18 16 22 22 C 1.50702 * 109.46852 * 180.02562 * 21 19 18 23 23 C 1.38420 * 120.02495 * 90.00605 * 22 21 19 24 24 F 1.35101 * 120.01163 * 359.95226 * 23 22 21 25 25 C 1.38471 * 119.97112 * 180.22932 * 23 22 21 26 26 C 1.38207 * 120.03032 * 359.49187 * 25 23 22 27 27 C 1.38209 * 120.04676 * 0.50516 * 26 25 23 28 28 C 1.38417 * 120.02533 * 269.97667 * 22 21 19 29 29 F 1.35100 * 120.01287 * 0.05440 * 28 22 21 30 30 H 1.09005 * 109.46865 * 300.03270 * 1 2 3 31 31 H 1.08998 * 109.47172 * 60.03238 * 1 2 3 32 32 H 1.08997 * 109.46854 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.49623 * 58.66552 * 4 2 1 34 34 H 1.08993 * 109.52576 * 298.58089 * 4 2 1 35 35 H 1.09001 * 109.58801 * 294.84727 * 5 4 2 36 36 H 1.08997 * 109.69858 * 174.49559 * 5 4 2 37 37 H 0.96999 * 119.99670 * 179.97438 * 10 9 7 38 38 H 1.09001 * 109.59093 * 293.82012 * 15 6 5 39 39 H 1.09004 * 109.70138 * 173.46483 * 15 6 5 40 40 H 0.97001 * 119.99922 * 24.83617 * 18 16 2 41 41 H 1.08996 * 109.46500 * 60.00583 * 21 19 18 42 42 H 1.08991 * 109.47329 * 300.00267 * 21 19 18 43 43 H 1.08006 * 119.98185 * 179.74894 * 25 23 22 44 44 H 1.07995 * 119.97775 * 180.27966 * 26 25 23 45 45 H 1.07998 * 119.98717 * 179.77024 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2501 5 6 3.5715 -0.6885 -1.2642 6 7 4.0679 -1.2488 0.0001 7 6 4.9764 -2.2733 0.0001 8 1 5.0044 -2.9702 -0.8245 9 6 5.8615 -2.4161 1.0599 10 7 6.0659 -1.4124 1.8864 11 14 6.7624 -4.0328 1.3130 12 1 8.0468 -4.0055 0.5682 13 1 7.0334 -4.2272 2.7601 14 1 5.9233 -5.1508 0.8120 15 6 3.5714 -0.6885 1.2643 16 6 2.0398 -0.7207 1.2501 17 1 1.6573 -0.2212 2.1402 18 7 1.5802 -2.1116 1.2343 19 6 1.4548 -2.7932 2.3903 20 8 1.7220 -2.2548 3.4437 21 6 0.9814 -4.2238 2.3741 22 6 0.9280 -4.7512 3.7847 23 6 -0.2309 -4.6195 4.5301 24 9 -1.3146 -4.0170 3.9935 25 6 -0.2771 -5.1003 5.8278 26 6 0.8297 -5.7208 6.3754 27 6 1.9874 -5.8530 5.6321 28 6 2.0377 -5.3683 4.3359 29 9 3.1696 -5.4971 3.6097 30 1 -0.3633 0.5144 0.8897 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3633 -1.0277 0.0005 33 1 1.6573 -0.2207 -2.1398 34 1 1.6979 -1.7556 -1.2388 35 1 3.9143 0.3410 -1.3673 36 1 3.9438 -1.2829 -2.0985 37 1 6.6841 -1.5123 2.6271 38 1 3.9143 0.3410 1.3674 39 1 3.9417 -1.2824 2.1000 40 1 1.3661 -2.5421 0.3919 41 1 1.6717 -4.8281 1.7857 42 1 -0.0130 -4.2724 1.9305 43 1 -1.1800 -4.9939 6.4110 44 1 0.7913 -6.0995 7.3860 45 1 2.8530 -6.3348 6.0622 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968033414.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:43 Heat of formation + Delta-G solvation = -104.826910 kcal Electronic energy + Delta-G solvation = -30979.472761 eV Core-core repulsion = 26632.355735 eV Total energy + Delta-G solvation = -4347.117026 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.09248 -50.04991 -41.21164 -39.87671 -38.93648 -35.93505 -34.38932 -33.99020 -32.83483 -31.27923 -30.98644 -29.10645 -28.44924 -25.83743 -24.12492 -23.89428 -23.25308 -22.74444 -21.59810 -20.29516 -19.19168 -18.70169 -18.43057 -18.32564 -17.21762 -16.93467 -16.82228 -16.64050 -16.42334 -16.33914 -15.96179 -15.70291 -15.47664 -15.28958 -14.88324 -14.84687 -14.73624 -14.38326 -14.10822 -13.78095 -13.60348 -13.39941 -13.14238 -13.01846 -12.96062 -12.74848 -12.65748 -12.58631 -12.48658 -12.35347 -12.26902 -11.96140 -11.57114 -11.31831 -11.07981 -10.95230 -10.55402 -9.95290 -9.89331 -9.76234 -8.65469 -7.88196 -5.32749 -0.05675 -0.03354 1.36328 1.41942 1.47709 1.69933 2.20559 2.46476 2.53269 2.89746 3.28417 3.33937 3.40818 3.63203 3.67401 3.83757 3.86969 3.98675 4.00141 4.12408 4.20223 4.34086 4.37795 4.51944 4.66503 4.71006 4.77563 4.83646 4.84781 4.91265 4.95117 5.01064 5.03842 5.09122 5.16166 5.17177 5.23942 5.26149 5.46182 5.51637 5.59213 5.70196 5.73416 5.77165 6.37572 6.66480 7.13097 7.36090 7.86686 8.37377 9.16669 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010245 B = 0.005356 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.394754 B = 5226.981084 C = 7352.927571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.087 4.087 3 H 0.074 0.926 4 C -0.115 4.115 5 C 0.135 3.865 6 N -0.599 5.599 7 C -0.248 4.248 8 H 0.070 0.930 9 C -0.049 4.049 10 N -0.933 5.933 11 Si 0.948 3.052 12 H -0.280 1.280 13 H -0.304 1.304 14 H -0.267 1.267 15 C 0.172 3.828 16 C 0.138 3.862 17 H 0.060 0.940 18 N -0.688 5.688 19 C 0.511 3.489 20 O -0.586 6.586 21 C -0.099 4.099 22 C -0.152 4.152 23 C 0.123 3.877 24 F -0.134 7.134 25 C -0.157 4.157 26 C -0.050 4.050 27 C -0.166 4.166 28 C 0.104 3.896 29 F -0.149 7.149 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.012 0.988 36 H 0.058 0.942 37 H 0.244 0.756 38 H -0.006 1.006 39 H 0.046 0.954 40 H 0.407 0.593 41 H 0.110 0.890 42 H 0.136 0.864 43 H 0.174 0.826 44 H 0.188 0.812 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.782 -7.827 2.554 19.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.106 4.106 3 H 0.093 0.907 4 C -0.154 4.154 5 C 0.010 3.990 6 N -0.323 5.323 7 C -0.379 4.379 8 H 0.088 0.912 9 C -0.244 4.244 10 N -0.580 5.580 11 Si 0.777 3.223 12 H -0.206 1.206 13 H -0.231 1.231 14 H -0.192 1.192 15 C 0.045 3.955 16 C 0.031 3.969 17 H 0.078 0.922 18 N -0.339 5.339 19 C 0.298 3.702 20 O -0.466 6.466 21 C -0.138 4.138 22 C -0.154 4.154 23 C 0.103 3.897 24 F -0.113 7.113 25 C -0.175 4.175 26 C -0.068 4.068 27 C -0.185 4.185 28 C 0.085 3.915 29 F -0.128 7.128 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.082 0.918 35 H 0.030 0.970 36 H 0.076 0.924 37 H 0.053 0.947 38 H 0.012 0.988 39 H 0.065 0.935 40 H 0.244 0.756 41 H 0.128 0.872 42 H 0.154 0.846 43 H 0.192 0.808 44 H 0.205 0.795 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -17.482 -7.410 3.314 19.274 hybrid contribution 1.436 -0.448 -0.268 1.528 sum -16.045 -7.858 3.047 18.124 Atomic orbital electron populations 1.21754 0.92960 1.02235 1.02187 1.21267 0.96936 0.99031 0.93358 0.90731 1.21953 0.95482 1.00527 0.97427 1.21159 0.93808 0.95855 0.88139 1.44158 1.48062 1.39456 1.00607 1.19403 1.09001 1.03427 1.06033 0.91201 1.25678 0.98767 0.99609 1.00341 1.70169 1.38442 1.30800 1.18584 0.85551 0.79086 0.81424 0.76233 1.20642 1.23068 1.19203 1.20849 0.90209 0.94800 0.89659 1.21448 0.95071 0.81823 0.98515 0.92225 1.45671 1.66155 1.13513 1.08512 1.20752 0.77055 0.88570 0.83854 1.90658 1.52308 1.71168 1.32515 1.20512 1.06036 0.92651 0.94630 1.19444 0.93855 1.04183 0.97955 1.17378 0.82628 0.96565 0.93113 1.91483 1.52250 1.81106 1.86455 1.21585 1.02513 1.00656 0.92747 1.21321 0.89555 0.94783 1.01125 1.21560 1.02104 1.03148 0.91697 1.17746 0.81641 1.00514 0.91583 1.91515 1.49458 1.93967 1.77869 0.93354 0.90471 0.92348 0.89007 0.91798 0.97023 0.92374 0.94723 0.98808 0.93542 0.75589 0.87192 0.84623 0.80835 0.79520 0.82377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 9.05 71.98 0.65 -2.39 16 2 C -0.09 -2.59 2.48 -10.77 -0.03 -2.62 16 3 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 4 C -0.12 -3.29 5.19 30.67 0.16 -3.13 16 5 C 0.14 5.27 6.52 86.36 0.56 5.83 16 6 N -0.60 -29.75 2.91 -699.08 -2.03 -31.79 16 7 C -0.25 -13.75 9.58 84.04 0.81 -12.94 16 8 H 0.07 3.71 7.88 -2.91 -0.02 3.69 16 9 C -0.05 -2.86 4.92 84.86 0.42 -2.44 16 10 N -0.93 -59.15 11.19 21.65 0.24 -58.91 16 11 Si 0.95 47.85 29.59 68.60 2.03 49.87 16 12 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 13 H -0.30 -15.92 7.11 99.48 0.71 -15.21 16 14 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 15 C 0.17 8.79 4.90 86.37 0.42 9.21 16 16 C 0.14 5.42 2.24 45.07 0.10 5.52 16 17 H 0.06 2.52 7.58 -2.39 -0.02 2.50 16 18 N -0.69 -24.75 4.25 -442.16 -1.88 -26.63 16 19 C 0.51 20.08 7.79 87.66 0.68 20.76 16 20 O -0.59 -28.32 15.70 -3.04 -0.05 -28.37 16 21 C -0.10 -3.04 5.48 29.10 0.16 -2.88 16 22 C -0.15 -4.74 4.38 -19.78 -0.09 -4.82 16 23 C 0.12 3.24 7.24 22.37 0.16 3.40 16 24 F -0.13 -3.56 16.48 44.97 0.74 -2.82 16 25 C -0.16 -3.00 10.02 22.32 0.22 -2.78 16 26 C -0.05 -0.86 10.04 22.26 0.22 -0.63 16 27 C -0.17 -3.94 10.03 22.32 0.22 -3.72 16 28 C 0.10 3.37 7.24 22.37 0.16 3.54 16 29 F -0.15 -5.84 16.48 44.97 0.74 -5.10 16 30 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.06 1.26 7.54 -2.39 -0.02 1.24 16 33 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.06 1.74 6.40 -2.39 -0.02 1.73 16 35 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.06 2.19 7.93 -2.39 -0.02 2.17 16 37 H 0.24 15.26 8.31 -92.71 -0.77 14.49 16 38 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 39 H 0.05 2.85 6.07 -2.38 -0.01 2.84 16 40 H 0.41 12.40 6.64 -92.71 -0.62 11.78 16 41 H 0.11 3.35 7.64 -2.39 -0.02 3.33 16 42 H 0.14 3.17 7.64 -2.39 -0.02 3.15 16 43 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 44 H 0.19 1.46 8.06 -2.91 -0.02 1.44 16 45 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -78.68 371.68 5.04 -73.64 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.40 Total: 20.18 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 4.84 Total: 9.92 kcal Atomic # 7 Polarization: -113.65 SS G_CDS: -3.67 Total: -117.33 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -0.05 Total: -28.37 kcal Atomic # 9 Polarization: -9.41 SS G_CDS: 1.48 Total: -7.92 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 2.03 Total: 49.87 kcal Total: -78.68 5.04 -73.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968033414.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.187 kcal (2) G-P(sol) polarization free energy of solvation -78.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds