Wall clock time and date at job start Tue Mar 31 2020 22:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.45610 * 2 1 4 4 C 1.53033 * 109.46042 * 240.04505 * 2 1 3 5 5 C 1.53192 * 109.31454 * 178.61046 * 4 2 1 6 6 N 1.46923 * 108.77319 * 54.63645 * 5 4 2 7 7 C 1.36932 * 120.63498 * 126.36958 * 6 5 4 8 8 H 1.07999 * 120.00180 * 207.68710 * 7 6 5 9 9 C 1.38813 * 119.99606 * 27.68639 * 7 6 5 10 10 N 1.31614 * 120.00208 * 17.36224 * 9 7 6 11 11 Si 1.86806 * 119.99773 * 197.36164 * 9 7 6 12 12 H 1.48496 * 109.47049 * 60.00180 * 11 9 7 13 13 H 1.48498 * 109.46927 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47094 * 299.99708 * 11 9 7 15 15 C 1.46926 * 118.73737 * 306.39004 * 6 5 4 16 16 C 1.53036 * 109.46046 * 119.97123 * 2 1 3 17 17 H 1.09001 * 109.52279 * 61.42517 * 16 2 1 18 18 N 1.46491 * 109.50228 * 301.33805 * 16 2 1 19 19 C 1.34774 * 120.00103 * 155.15994 * 18 16 2 20 20 O 1.21280 * 120.00274 * 0.02562 * 19 18 16 21 21 C 1.50711 * 119.99982 * 180.02562 * 19 18 16 22 22 C 1.50703 * 109.46875 * 180.02562 * 21 19 18 23 23 C 1.38415 * 120.02562 * 269.72748 * 22 21 19 24 24 F 1.35096 * 120.01387 * 359.97228 * 23 22 21 25 25 C 1.38476 * 119.97417 * 179.74967 * 23 22 21 26 26 C 1.38214 * 120.02386 * 0.50230 * 25 23 22 27 27 C 1.38208 * 120.04933 * 359.76879 * 26 25 23 28 28 C 1.38419 * 120.02418 * 90.00103 * 22 21 19 29 29 F 1.35103 * 120.01171 * 359.97438 * 28 22 21 30 30 H 1.09004 * 109.46998 * 300.02407 * 1 2 3 31 31 H 1.08997 * 109.47691 * 60.02603 * 1 2 3 32 32 H 1.08995 * 109.46792 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.49828 * 58.65873 * 4 2 1 34 34 H 1.09008 * 109.49569 * 298.56581 * 4 2 1 35 35 H 1.08996 * 109.58552 * 294.85030 * 5 4 2 36 36 H 1.09004 * 109.58666 * 174.42175 * 5 4 2 37 37 H 0.96999 * 120.00030 * 179.97438 * 10 9 7 38 38 H 1.09004 * 109.58711 * 173.39829 * 15 6 5 39 39 H 1.09001 * 109.59008 * 293.68199 * 15 6 5 40 40 H 0.97004 * 119.99896 * 335.16275 * 18 16 2 41 41 H 1.08996 * 109.46828 * 299.99804 * 21 19 18 42 42 H 1.08996 * 109.46847 * 60.00477 * 21 19 18 43 43 H 1.07998 * 119.98612 * 180.22833 * 25 23 22 44 44 H 1.07996 * 119.97515 * 179.75081 * 26 25 23 45 45 H 1.08000 * 119.98443 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7205 -1.2502 5 6 3.5714 -0.6882 -1.2644 6 7 4.0679 -1.2487 -0.0003 7 6 4.9758 -2.2738 -0.0004 8 1 5.0086 -2.9662 0.8278 9 6 5.8539 -2.4229 -1.0651 10 7 6.0602 -1.4211 -1.8933 11 14 6.7429 -4.0457 -1.3222 12 1 5.7474 -5.1289 -1.5238 13 1 7.6161 -3.9474 -2.5193 14 1 7.5716 -4.3507 -0.1282 15 6 3.5714 -0.6887 1.2641 16 6 2.0399 -0.7208 1.2500 17 1 1.6979 -1.7558 1.2386 18 7 1.5257 -0.0490 2.4459 19 6 1.4003 -0.7319 3.6011 20 8 1.7136 -1.9025 3.6506 21 6 0.8707 -0.0408 4.8313 22 6 0.8304 -1.0178 5.9780 23 6 -0.3062 -1.7748 6.2034 24 9 -1.3804 -1.6379 5.3957 25 6 -0.3402 -2.6759 7.2543 26 6 0.7565 -2.8120 8.0843 27 6 1.8900 -2.0526 7.8636 28 6 1.9280 -1.1546 6.8102 29 9 3.0363 -0.4127 6.5944 30 1 -0.3633 0.5142 0.8898 31 1 -0.3634 0.5134 -0.8902 32 1 -0.3633 -1.0276 0.0005 33 1 1.6571 -0.2203 -2.1399 34 1 1.6978 -1.7554 -1.2386 35 1 3.9142 0.3413 -1.3673 36 1 3.9417 -1.2840 -2.0987 37 1 6.6741 -1.5253 -2.6371 38 1 3.9418 -1.2847 2.0982 39 1 3.9164 0.3400 1.3685 40 1 1.2754 0.8873 2.4064 41 1 1.5229 0.7938 5.0882 42 1 -0.1349 0.3308 4.6346 43 1 -1.2256 -3.2694 7.4280 44 1 0.7277 -3.5121 8.9061 45 1 2.7465 -2.1601 8.5126 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968033415.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:47 Heat of formation + Delta-G solvation = -87.288384 kcal Electronic energy + Delta-G solvation = -29869.924952 eV Core-core repulsion = 25523.568454 eV Total energy + Delta-G solvation = -4346.356499 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.19491 -49.13851 -39.93771 -38.88807 -37.57455 -34.45084 -33.24808 -32.89884 -31.07231 -30.51159 -29.30968 -27.86233 -26.95475 -24.06800 -23.09857 -22.96016 -21.87702 -21.01384 -20.14781 -19.31890 -18.34606 -17.57032 -17.06607 -16.81440 -16.33370 -15.89875 -15.77321 -15.47425 -15.42162 -14.94424 -14.63439 -14.59778 -13.92757 -13.76532 -13.71257 -13.48124 -13.36812 -13.10401 -12.97872 -12.50601 -12.43363 -12.17852 -12.01071 -11.81725 -11.64511 -11.56054 -11.45887 -11.00525 -10.75823 -10.64461 -10.24088 -10.15983 -9.93782 -9.83273 -9.61657 -9.53076 -9.05190 -8.96070 -8.77003 -8.36311 -6.64215 -5.75248 -3.16963 0.72551 0.76220 2.83539 3.03726 3.43389 3.47183 3.47919 3.52457 3.69187 4.16725 4.18776 4.40373 4.54502 4.55112 4.89299 4.93814 5.13622 5.16008 5.18742 5.30971 5.41061 5.49610 5.54988 5.63585 5.64795 5.69113 5.79060 5.89996 5.92147 5.98787 6.09401 6.19902 6.25095 6.31413 6.52159 6.58568 6.65367 6.71347 6.76195 6.86435 7.03988 7.38259 7.67182 7.75507 7.86153 8.44183 8.50919 9.25617 9.87948 10.43632 11.33547 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013040 B = 0.003234 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.735425 B = 8656.066199 C = 9875.510013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.067 0.933 4 C -0.134 4.134 5 C 0.167 3.833 6 N -0.587 5.587 7 C -0.250 4.250 8 H 0.066 0.934 9 C 0.003 3.997 10 N -0.905 5.905 11 Si 0.903 3.097 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.282 1.282 15 C 0.142 3.858 16 C 0.133 3.867 17 H 0.085 0.915 18 N -0.719 5.719 19 C 0.514 3.486 20 O -0.529 6.529 21 C -0.105 4.105 22 C -0.133 4.133 23 C 0.141 3.859 24 F -0.129 7.129 25 C -0.165 4.165 26 C -0.063 4.063 27 C -0.164 4.164 28 C 0.144 3.856 29 F -0.126 7.126 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.018 0.982 36 H 0.089 0.911 37 H 0.254 0.746 38 H 0.057 0.943 39 H 0.017 0.983 40 H 0.395 0.605 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.313 4.598 17.227 23.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.085 0.915 4 C -0.173 4.173 5 C 0.042 3.958 6 N -0.310 5.310 7 C -0.380 4.380 8 H 0.083 0.917 9 C -0.195 4.195 10 N -0.549 5.549 11 Si 0.732 3.268 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.209 1.209 15 C 0.014 3.986 16 C 0.028 3.972 17 H 0.104 0.896 18 N -0.370 5.370 19 C 0.298 3.702 20 O -0.404 6.404 21 C -0.145 4.145 22 C -0.135 4.135 23 C 0.121 3.879 24 F -0.108 7.108 25 C -0.184 4.184 26 C -0.081 4.081 27 C -0.183 4.183 28 C 0.124 3.876 29 F -0.105 7.105 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.036 0.964 36 H 0.108 0.892 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.035 0.965 40 H 0.228 0.772 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.160 0.840 44 H 0.161 0.839 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.936 3.772 17.054 22.981 hybrid contribution 0.396 -0.121 -0.426 0.594 sum -14.540 3.652 16.627 22.388 Atomic orbital electron populations 1.21850 0.96016 1.01555 1.00687 1.21303 0.94540 0.99651 0.95497 0.91483 1.22251 1.00688 0.99544 0.94846 1.20845 0.87307 0.97281 0.90389 1.43984 1.48115 1.39774 0.99128 1.19185 1.09772 1.02842 1.06207 0.91658 1.25002 0.97199 0.97491 0.99846 1.70027 1.37819 1.29052 1.18017 0.86358 0.79237 0.83872 0.77293 1.20988 1.21632 1.20850 1.21184 0.90121 0.96609 0.90647 1.21760 0.96657 0.96918 0.81853 0.89649 1.46069 1.66191 1.14244 1.10461 1.20202 0.78496 0.87330 0.84136 1.90751 1.49103 1.16135 1.84456 1.20544 1.04694 0.97945 0.91308 1.19282 0.93543 1.01905 0.98815 1.17139 0.83537 0.96815 0.90376 1.91516 1.52951 1.94584 1.71715 1.21162 1.01194 1.00113 0.95916 1.20827 0.91318 0.97532 0.98462 1.21191 1.00641 0.97734 0.98697 1.17169 0.82529 0.92473 0.95437 1.91543 1.50129 1.74488 1.94312 0.93412 0.92980 0.92961 0.92728 0.92450 0.96354 0.89239 0.93632 0.92459 0.96532 0.77198 0.87198 0.87360 0.84033 0.83939 0.83934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.02 37.16 0.34 -1.57 16 2 C -0.09 -1.47 2.27 -90.58 -0.21 -1.68 16 3 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 4 C -0.13 -2.52 5.36 -26.61 -0.14 -2.66 16 5 C 0.17 4.00 5.31 -3.71 -0.02 3.98 16 6 N -0.59 -15.21 2.99 -172.32 -0.52 -15.73 16 7 C -0.25 -7.19 9.58 -15.06 -0.14 -7.33 16 8 H 0.07 1.89 7.89 -52.49 -0.41 1.48 16 9 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 10 N -0.90 -26.60 11.19 55.49 0.62 -25.98 16 11 Si 0.90 22.40 29.59 -169.99 -5.03 17.37 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 15 C 0.14 3.18 6.09 -3.71 -0.02 3.16 16 16 C 0.13 2.44 2.06 -67.82 -0.14 2.30 16 17 H 0.09 1.82 7.58 -51.93 -0.39 1.42 16 18 N -0.72 -10.44 4.37 -53.69 -0.23 -10.67 16 19 C 0.51 8.03 7.79 -10.98 -0.09 7.95 16 20 O -0.53 -10.76 15.70 5.56 0.09 -10.67 16 21 C -0.10 -1.20 5.48 -29.03 -0.16 -1.36 16 22 C -0.13 -1.64 4.38 -104.49 -0.46 -2.10 16 23 C 0.14 1.64 7.24 -39.43 -0.29 1.35 16 24 F -0.13 -1.58 16.47 2.25 0.04 -1.54 16 25 C -0.16 -1.51 10.03 -39.50 -0.40 -1.90 16 26 C -0.06 -0.50 10.04 -39.60 -0.40 -0.90 16 27 C -0.16 -1.56 10.02 -39.51 -0.40 -1.95 16 28 C 0.14 1.74 7.24 -39.43 -0.29 1.45 16 29 F -0.13 -1.68 16.48 2.25 0.04 -1.64 16 30 H 0.05 0.55 7.36 -51.93 -0.38 0.17 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 34 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.09 2.40 6.04 -51.93 -0.31 2.08 16 37 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.06 1.39 7.93 -51.93 -0.41 0.98 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.39 4.36 8.30 -40.82 -0.34 4.02 16 41 H 0.11 1.05 7.64 -51.93 -0.40 0.65 16 42 H 0.11 0.98 7.63 -51.93 -0.40 0.58 16 43 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 44 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 45 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 374.79 15.07 5.65 5.65 Total: -1.00 -33.77 374.79 -8.65 -42.42 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.41 Total: 2.07 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -2.89 Total: -1.27 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: -0.13 Total: -52.38 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.07 Total: -3.18 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.37 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.77 -8.65 -42.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968033415.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.873 kcal (2) G-P(sol) polarization free energy of solvation -33.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds