Wall clock time and date at job start Tue Mar 31 2020 22:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.45610 * 2 1 4 4 C 1.53033 * 109.46042 * 240.04505 * 2 1 3 5 5 C 1.53192 * 109.31454 * 178.61046 * 4 2 1 6 6 N 1.46923 * 108.77319 * 54.63645 * 5 4 2 7 7 C 1.36932 * 120.63498 * 126.36958 * 6 5 4 8 8 H 1.07999 * 120.00180 * 207.68710 * 7 6 5 9 9 C 1.38813 * 119.99606 * 27.68639 * 7 6 5 10 10 N 1.31614 * 120.00208 * 17.36224 * 9 7 6 11 11 Si 1.86806 * 119.99773 * 197.36164 * 9 7 6 12 12 H 1.48496 * 109.47049 * 60.00180 * 11 9 7 13 13 H 1.48498 * 109.46927 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47094 * 299.99708 * 11 9 7 15 15 C 1.46926 * 118.73737 * 306.39004 * 6 5 4 16 16 C 1.53036 * 109.46046 * 119.97123 * 2 1 3 17 17 H 1.09001 * 109.52279 * 61.42517 * 16 2 1 18 18 N 1.46491 * 109.50228 * 301.33805 * 16 2 1 19 19 C 1.34774 * 120.00103 * 155.15994 * 18 16 2 20 20 O 1.21280 * 120.00274 * 0.02562 * 19 18 16 21 21 C 1.50711 * 119.99982 * 180.02562 * 19 18 16 22 22 C 1.50703 * 109.46875 * 180.02562 * 21 19 18 23 23 C 1.38415 * 120.02562 * 269.72748 * 22 21 19 24 24 F 1.35096 * 120.01387 * 359.97228 * 23 22 21 25 25 C 1.38476 * 119.97417 * 179.74967 * 23 22 21 26 26 C 1.38214 * 120.02386 * 0.50230 * 25 23 22 27 27 C 1.38208 * 120.04933 * 359.76879 * 26 25 23 28 28 C 1.38419 * 120.02418 * 90.00103 * 22 21 19 29 29 F 1.35103 * 120.01171 * 359.97438 * 28 22 21 30 30 H 1.09004 * 109.46998 * 300.02407 * 1 2 3 31 31 H 1.08997 * 109.47691 * 60.02603 * 1 2 3 32 32 H 1.08995 * 109.46792 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.49828 * 58.65873 * 4 2 1 34 34 H 1.09008 * 109.49569 * 298.56581 * 4 2 1 35 35 H 1.08996 * 109.58552 * 294.85030 * 5 4 2 36 36 H 1.09004 * 109.58666 * 174.42175 * 5 4 2 37 37 H 0.96999 * 120.00030 * 179.97438 * 10 9 7 38 38 H 1.09004 * 109.58711 * 173.39829 * 15 6 5 39 39 H 1.09001 * 109.59008 * 293.68199 * 15 6 5 40 40 H 0.97004 * 119.99896 * 335.16275 * 18 16 2 41 41 H 1.08996 * 109.46828 * 299.99804 * 21 19 18 42 42 H 1.08996 * 109.46847 * 60.00477 * 21 19 18 43 43 H 1.07998 * 119.98612 * 180.22833 * 25 23 22 44 44 H 1.07996 * 119.97515 * 179.75081 * 26 25 23 45 45 H 1.08000 * 119.98443 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7205 -1.2502 5 6 3.5714 -0.6882 -1.2644 6 7 4.0679 -1.2487 -0.0003 7 6 4.9758 -2.2738 -0.0004 8 1 5.0086 -2.9662 0.8278 9 6 5.8539 -2.4229 -1.0651 10 7 6.0602 -1.4211 -1.8933 11 14 6.7429 -4.0457 -1.3222 12 1 5.7474 -5.1289 -1.5238 13 1 7.6161 -3.9474 -2.5193 14 1 7.5716 -4.3507 -0.1282 15 6 3.5714 -0.6887 1.2641 16 6 2.0399 -0.7208 1.2500 17 1 1.6979 -1.7558 1.2386 18 7 1.5257 -0.0490 2.4459 19 6 1.4003 -0.7319 3.6011 20 8 1.7136 -1.9025 3.6506 21 6 0.8707 -0.0408 4.8313 22 6 0.8304 -1.0178 5.9780 23 6 -0.3062 -1.7748 6.2034 24 9 -1.3804 -1.6379 5.3957 25 6 -0.3402 -2.6759 7.2543 26 6 0.7565 -2.8120 8.0843 27 6 1.8900 -2.0526 7.8636 28 6 1.9280 -1.1546 6.8102 29 9 3.0363 -0.4127 6.5944 30 1 -0.3633 0.5142 0.8898 31 1 -0.3634 0.5134 -0.8902 32 1 -0.3633 -1.0276 0.0005 33 1 1.6571 -0.2203 -2.1399 34 1 1.6978 -1.7554 -1.2386 35 1 3.9142 0.3413 -1.3673 36 1 3.9417 -1.2840 -2.0987 37 1 6.6741 -1.5253 -2.6371 38 1 3.9418 -1.2847 2.0982 39 1 3.9164 0.3400 1.3685 40 1 1.2754 0.8873 2.4064 41 1 1.5229 0.7938 5.0882 42 1 -0.1349 0.3308 4.6346 43 1 -1.2256 -3.2694 7.4280 44 1 0.7277 -3.5121 8.9061 45 1 2.7465 -2.1601 8.5126 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968033415.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:46 Heat of formation + Delta-G solvation = -107.805941 kcal Electronic energy + Delta-G solvation = -29870.814660 eV Core-core repulsion = 25523.568454 eV Total energy + Delta-G solvation = -4347.246207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.06092 -50.04985 -41.21882 -39.84395 -39.03887 -36.20951 -34.55058 -34.01066 -33.05791 -31.26252 -30.81186 -29.19960 -28.35264 -25.90659 -24.26456 -23.88803 -23.07586 -22.69211 -21.50259 -20.86802 -19.18116 -18.77210 -18.41471 -18.22137 -17.46744 -16.89602 -16.86988 -16.61512 -16.44620 -16.33039 -16.19178 -15.59750 -15.46242 -15.31703 -15.14922 -14.91906 -14.64548 -14.38033 -14.14999 -13.77197 -13.62918 -13.40410 -13.21465 -13.15886 -12.94777 -12.76099 -12.69514 -12.59600 -12.34692 -12.33951 -12.05654 -11.97722 -11.69342 -11.46335 -11.28376 -10.97787 -10.62174 -10.12899 -9.89471 -9.74443 -8.72647 -7.93433 -5.38929 -0.04981 -0.01552 1.41899 1.44387 1.51908 1.60046 2.07970 2.42860 2.51299 2.89713 3.20431 3.32984 3.41423 3.64538 3.65634 3.72652 3.88143 3.94007 3.99972 4.10165 4.22369 4.36976 4.37945 4.42751 4.50552 4.64055 4.73663 4.82057 4.83748 4.90165 4.93427 5.01075 5.02927 5.04791 5.07820 5.17283 5.20008 5.21221 5.42577 5.44463 5.54736 5.59540 5.74301 5.78198 6.33522 6.56240 7.09787 7.26791 7.79183 8.29309 9.12200 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013040 B = 0.003234 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.735425 B = 8656.066199 C = 9875.510013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.082 4.082 3 H 0.082 0.918 4 C -0.123 4.123 5 C 0.172 3.828 6 N -0.607 5.607 7 C -0.272 4.272 8 H 0.050 0.950 9 C -0.041 4.041 10 N -0.928 5.928 11 Si 0.965 3.035 12 H -0.280 1.280 13 H -0.284 1.284 14 H -0.279 1.279 15 C 0.145 3.855 16 C 0.151 3.849 17 H 0.052 0.948 18 N -0.705 5.705 19 C 0.510 3.490 20 O -0.581 6.581 21 C -0.096 4.096 22 C -0.155 4.155 23 C 0.118 3.882 24 F -0.137 7.137 25 C -0.162 4.162 26 C -0.053 4.053 27 C -0.165 4.165 28 C 0.113 3.887 29 F -0.141 7.141 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.040 0.960 33 H 0.084 0.916 34 H 0.044 0.956 35 H 0.005 0.995 36 H 0.055 0.945 37 H 0.253 0.747 38 H 0.025 0.975 39 H 0.020 0.980 40 H 0.416 0.584 41 H 0.129 0.871 42 H 0.136 0.864 43 H 0.167 0.833 44 H 0.183 0.817 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.314 5.004 18.513 25.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.102 4.102 3 H 0.100 0.900 4 C -0.163 4.163 5 C 0.047 3.953 6 N -0.331 5.331 7 C -0.402 4.402 8 H 0.068 0.932 9 C -0.237 4.237 10 N -0.573 5.573 11 Si 0.793 3.207 12 H -0.206 1.206 13 H -0.210 1.210 14 H -0.204 1.204 15 C 0.018 3.982 16 C 0.045 3.955 17 H 0.071 0.929 18 N -0.357 5.357 19 C 0.297 3.703 20 O -0.460 6.460 21 C -0.135 4.135 22 C -0.157 4.157 23 C 0.099 3.901 24 F -0.116 7.116 25 C -0.181 4.181 26 C -0.071 4.071 27 C -0.183 4.183 28 C 0.094 3.906 29 F -0.120 7.120 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.102 0.898 34 H 0.063 0.937 35 H 0.023 0.977 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.044 0.956 39 H 0.038 0.962 40 H 0.254 0.746 41 H 0.147 0.853 42 H 0.154 0.846 43 H 0.185 0.815 44 H 0.200 0.800 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -16.975 4.234 18.356 25.357 hybrid contribution 1.052 -0.271 -0.737 1.312 sum -15.923 3.962 17.619 24.076 Atomic orbital electron populations 1.21769 0.92829 1.01609 1.02966 1.21234 0.97009 0.99367 0.92547 0.89980 1.22088 0.96688 0.99748 0.97741 1.20719 0.90678 0.95409 0.88459 1.44208 1.48292 1.39729 1.00839 1.19345 1.10830 1.03775 1.06279 0.93206 1.25706 0.97992 1.00527 0.99487 1.70154 1.38329 1.30591 1.18259 0.85386 0.78116 0.79977 0.77260 1.20569 1.20957 1.20448 1.21207 0.93075 0.95617 0.88290 1.21216 0.93506 0.96206 0.84596 0.92939 1.45843 1.65454 1.15169 1.09210 1.21003 0.77288 0.86816 0.85180 1.90726 1.51313 1.18689 1.85312 1.20556 1.06286 0.97856 0.88837 1.19445 0.94120 1.02827 0.99313 1.17445 0.83390 0.97881 0.91383 1.91487 1.53183 1.94757 1.72136 1.21577 1.02483 0.99145 0.94847 1.21313 0.89956 0.97036 0.98760 1.21571 1.01973 0.96798 0.97989 1.17560 0.82356 0.93764 0.96964 1.91496 1.50854 1.75064 1.94589 0.91099 0.90780 0.94035 0.89751 0.93746 0.97655 0.92631 0.93749 0.95617 0.96169 0.74634 0.85342 0.84586 0.81518 0.79971 0.81968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 9.02 71.98 0.65 -2.48 16 2 C -0.08 -2.54 2.27 -10.77 -0.02 -2.56 16 3 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 4 C -0.12 -4.58 5.36 30.67 0.16 -4.41 16 5 C 0.17 8.47 5.31 86.36 0.46 8.92 16 6 N -0.61 -32.75 2.99 -699.09 -2.09 -34.84 16 7 C -0.27 -16.31 9.58 84.03 0.81 -15.50 16 8 H 0.05 3.06 7.89 -2.91 -0.02 3.04 16 9 C -0.04 -2.40 4.91 84.86 0.42 -1.99 16 10 N -0.93 -56.04 11.19 21.65 0.24 -55.80 16 11 Si 0.97 47.12 29.59 68.60 2.03 49.15 16 12 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 13 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 14 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 15 C 0.15 6.75 6.09 86.36 0.53 7.27 16 16 C 0.15 5.57 2.06 45.07 0.09 5.66 16 17 H 0.05 2.31 7.58 -2.39 -0.02 2.30 16 18 N -0.70 -19.84 4.37 -442.17 -1.93 -21.77 16 19 C 0.51 15.92 7.79 87.66 0.68 16.60 16 20 O -0.58 -24.51 15.70 -3.03 -0.05 -24.56 16 21 C -0.10 -2.09 5.48 29.11 0.16 -1.93 16 22 C -0.15 -3.74 4.38 -19.78 -0.09 -3.82 16 23 C 0.12 2.63 7.24 22.37 0.16 2.79 16 24 F -0.14 -3.20 16.47 44.97 0.74 -2.46 16 25 C -0.16 -2.60 10.03 22.32 0.22 -2.38 16 26 C -0.05 -0.70 10.04 22.26 0.22 -0.47 16 27 C -0.16 -2.88 10.02 22.32 0.22 -2.65 16 28 C 0.11 2.71 7.24 22.37 0.16 2.87 16 29 F -0.14 -3.83 16.48 44.97 0.74 -3.09 16 30 H 0.07 1.34 7.36 -2.38 -0.02 1.32 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 34 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 36 H 0.06 3.09 6.04 -2.38 -0.01 3.07 16 37 H 0.25 14.70 8.31 -92.71 -0.77 13.92 16 38 H 0.03 1.32 7.93 -2.38 -0.02 1.30 16 39 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.42 8.15 8.30 -92.71 -0.77 7.38 16 41 H 0.13 2.28 7.64 -2.39 -0.02 2.26 16 42 H 0.14 2.15 7.63 -2.39 -0.02 2.13 16 43 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 44 H 0.18 0.90 8.06 -2.91 -0.02 0.87 16 45 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -78.63 374.79 4.77 -73.86 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.25 Total: 13.58 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 4.84 Total: 5.93 kcal Atomic # 7 Polarization: -108.63 SS G_CDS: -3.78 Total: -112.42 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.05 Total: -24.56 kcal Atomic # 9 Polarization: -7.03 SS G_CDS: 1.48 Total: -5.55 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -78.63 4.77 -73.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968033415.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.945 kcal (2) G-P(sol) polarization free energy of solvation -78.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds