Wall clock time and date at job start Tue Mar 31 2020 22:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.45681 * 2 1 4 4 C 1.53041 * 109.45939 * 119.97137 * 2 1 3 5 5 C 1.53193 * 109.30945 * 181.38751 * 4 2 1 6 6 N 1.46932 * 108.77428 * 305.36377 * 5 4 2 7 7 C 1.36928 * 120.62883 * 233.58787 * 6 5 4 8 8 H 1.08002 * 120.00095 * 153.45652 * 7 6 5 9 9 C 1.38813 * 120.00321 * 333.46004 * 7 6 5 10 10 N 1.31623 * 119.99903 * 334.06765 * 9 7 6 11 11 Si 1.86804 * 120.00151 * 154.07324 * 9 7 6 12 12 H 1.48502 * 109.47036 * 179.97438 * 11 9 7 13 13 H 1.48492 * 109.46770 * 299.99638 * 11 9 7 14 14 H 1.48498 * 109.47068 * 60.00171 * 11 9 7 15 15 C 1.46921 * 118.73572 * 53.86298 * 6 5 4 16 16 C 1.53035 * 109.45758 * 240.04002 * 2 1 3 17 17 H 1.08996 * 109.50139 * 298.56282 * 16 2 1 18 18 N 1.46502 * 109.49847 * 58.63496 * 16 2 1 19 19 C 1.34779 * 119.99832 * 204.99955 * 18 16 2 20 20 O 1.21281 * 119.99859 * 359.97438 * 19 18 16 21 21 C 1.50701 * 120.00100 * 179.97438 * 19 18 16 22 22 C 1.50699 * 109.47450 * 179.97438 * 21 19 18 23 23 C 1.38413 * 120.02552 * 269.72645 * 22 21 19 24 24 F 1.35099 * 120.01274 * 359.97438 * 23 22 21 25 25 C 1.38476 * 119.97482 * 179.78941 * 23 22 21 26 26 C 1.38203 * 120.02509 * 0.48508 * 25 23 22 27 27 C 1.38208 * 120.05055 * 359.74383 * 26 25 23 28 28 C 1.38423 * 120.02227 * 89.99833 * 22 21 19 29 29 F 1.35098 * 120.01288 * 359.97438 * 28 22 21 30 30 H 1.09004 * 109.47088 * 300.02709 * 1 2 3 31 31 H 1.08994 * 109.47036 * 60.03003 * 1 2 3 32 32 H 1.08997 * 109.46742 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.49582 * 61.43351 * 4 2 1 34 34 H 1.09000 * 109.50047 * 301.33522 * 4 2 1 35 35 H 1.09000 * 109.58243 * 185.58397 * 5 4 2 36 36 H 1.08998 * 109.70395 * 65.22183 * 5 4 2 37 37 H 0.97001 * 119.99894 * 354.37781 * 10 9 7 38 38 H 1.09001 * 109.58789 * 65.93044 * 15 6 5 39 39 H 1.09007 * 109.58800 * 186.34787 * 15 6 5 40 40 H 0.97002 * 120.00402 * 24.99243 * 18 16 2 41 41 H 1.09001 * 109.47165 * 300.00207 * 21 19 18 42 42 H 1.09001 * 109.47354 * 59.99591 * 21 19 18 43 43 H 1.08006 * 119.98546 * 180.22687 * 25 23 22 44 44 H 1.08000 * 119.97863 * 179.77016 * 26 25 23 45 45 H 1.08004 * 119.98916 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7209 1.2500 5 6 3.5715 -0.6886 1.2642 6 7 4.0679 -1.2488 -0.0002 7 6 4.9765 -2.2732 -0.0003 8 1 5.0219 -2.9546 -0.8370 9 6 5.8391 -2.4361 1.0750 10 7 6.1640 -1.4012 1.8206 11 14 6.5388 -4.1239 1.4639 12 1 7.4265 -4.0304 2.6506 13 1 5.4275 -5.0666 1.7495 14 1 7.3191 -4.6163 0.3003 15 6 3.5756 -0.6846 -1.2643 16 6 2.0399 -0.7206 -1.2501 17 1 1.6979 -1.7555 -1.2385 18 7 1.5250 -0.0488 -2.4459 19 6 1.3965 -0.7325 -3.6003 20 8 1.7076 -1.9038 -3.6492 21 6 0.8664 -0.0417 -4.8302 22 6 0.8224 -1.0195 -5.9761 23 6 1.9163 -1.1551 -6.8133 24 9 3.0239 -0.4104 -6.6039 25 6 1.8763 -2.0570 -7.8632 26 6 0.7411 -2.8145 -8.0814 27 6 -0.3535 -2.6765 -7.2490 28 6 -0.3141 -1.7787 -6.1955 29 9 -1.3843 -1.6437 -5.3821 30 1 -0.3633 0.5143 0.8898 31 1 -0.3633 0.5133 -0.8902 32 1 -0.3633 -1.0277 0.0005 33 1 1.6979 -1.7557 1.2381 34 1 1.6573 -0.2209 2.1399 35 1 3.9417 -1.2847 2.0982 36 1 3.9164 0.3401 1.3685 37 1 5.8673 -0.5119 1.5718 38 1 3.9189 0.3452 -1.3631 39 1 3.9488 -1.2779 -2.0992 40 1 1.2765 0.8880 -2.4069 41 1 -0.1382 0.3322 -4.6324 42 1 1.5197 0.7916 -5.0890 43 1 2.7312 -2.1656 -8.5144 44 1 0.7094 -3.5150 -8.9028 45 1 -1.2400 -3.2693 -7.4202 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968033417.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:50 Heat of formation + Delta-G solvation = -89.586678 kcal Electronic energy + Delta-G solvation = -29914.204056 eV Core-core repulsion = 25567.747896 eV Total energy + Delta-G solvation = -4346.456160 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.21977 -49.16924 -39.99384 -38.93474 -37.71386 -34.70291 -33.30320 -32.99223 -31.02717 -30.53572 -29.40606 -27.92329 -26.81571 -23.96109 -23.12468 -23.06883 -21.98476 -21.02579 -20.21944 -19.35948 -18.37370 -17.60055 -17.37480 -17.11654 -16.44285 -15.93448 -15.79987 -15.58002 -15.44983 -14.99808 -14.62665 -14.17145 -14.12776 -13.92150 -13.75371 -13.64643 -13.45324 -13.18250 -13.00386 -12.62657 -12.41081 -12.38745 -12.18585 -11.86236 -11.80172 -11.59522 -11.49110 -10.94109 -10.67369 -10.63656 -10.35276 -10.02786 -10.00434 -9.92956 -9.68078 -9.32124 -9.08857 -8.98554 -8.87099 -8.26383 -6.86354 -6.04012 -3.17780 0.69941 0.73779 2.78328 3.00591 3.42659 3.55009 3.57670 3.66511 3.75772 4.13456 4.16185 4.37561 4.52194 4.64236 4.86437 4.88842 5.06416 5.10364 5.14973 5.20462 5.31122 5.36289 5.52161 5.57921 5.61881 5.66664 5.76366 5.82838 5.87762 5.89570 5.96096 6.06110 6.12706 6.20715 6.43401 6.47738 6.49585 6.61168 6.62742 6.72265 6.90902 7.08269 7.20412 7.68878 8.06600 8.40678 8.61513 9.14508 9.88747 10.30698 11.25013 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013149 B = 0.003226 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.976693 B = 8676.265001 C = 9817.699841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 H 0.067 0.933 4 C -0.128 4.128 5 C 0.146 3.854 6 N -0.595 5.595 7 C -0.347 4.347 8 H 0.057 0.943 9 C -0.024 4.024 10 N -0.917 5.917 11 Si 1.063 2.937 12 H -0.285 1.285 13 H -0.293 1.293 14 H -0.293 1.293 15 C 0.144 3.856 16 C 0.134 3.866 17 H 0.087 0.913 18 N -0.720 5.720 19 C 0.514 3.486 20 O -0.528 6.528 21 C -0.105 4.105 22 C -0.134 4.134 23 C 0.143 3.857 24 F -0.127 7.127 25 C -0.163 4.163 26 C -0.063 4.063 27 C -0.165 4.165 28 C 0.141 3.859 29 F -0.129 7.129 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.017 0.983 37 H 0.268 0.732 38 H 0.015 0.985 39 H 0.059 0.941 40 H 0.395 0.605 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.811 4.545 -17.516 24.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.085 0.915 4 C -0.167 4.167 5 C 0.020 3.980 6 N -0.318 5.318 7 C -0.476 4.476 8 H 0.075 0.925 9 C -0.225 4.225 10 N -0.557 5.557 11 Si 0.893 3.107 12 H -0.211 1.211 13 H -0.220 1.220 14 H -0.220 1.220 15 C 0.017 3.983 16 C 0.028 3.972 17 H 0.105 0.895 18 N -0.370 5.370 19 C 0.298 3.702 20 O -0.403 6.403 21 C -0.145 4.145 22 C -0.136 4.136 23 C 0.124 3.876 24 F -0.105 7.105 25 C -0.182 4.182 26 C -0.081 4.081 27 C -0.184 4.184 28 C 0.122 3.878 29 F -0.108 7.108 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.035 0.965 37 H 0.079 0.921 38 H 0.033 0.967 39 H 0.077 0.923 40 H 0.228 0.772 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.161 0.839 44 H 0.161 0.839 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.600 2.838 -16.414 22.150 hybrid contribution -1.063 1.541 -0.956 2.102 sum -15.664 4.379 -17.369 23.795 Atomic orbital electron populations 1.21842 0.95750 1.01684 1.00813 1.21299 0.94802 0.99546 0.95361 0.91504 1.22121 0.99472 0.99986 0.95159 1.21019 0.89596 0.96686 0.90656 1.44075 1.48510 1.40319 0.98926 1.20014 1.13479 1.05188 1.08929 0.92506 1.25813 0.95241 1.04641 0.96823 1.70794 1.42612 0.99382 1.42920 0.83554 0.75997 0.75071 0.76109 1.21103 1.22029 1.21973 1.21263 0.90234 0.96287 0.90529 1.21823 0.96457 0.97001 0.81882 0.89531 1.46058 1.66301 1.14174 1.10515 1.20220 0.78465 0.87344 0.84131 1.90756 1.49061 1.16092 1.84409 1.20536 1.04688 0.97938 0.91288 1.19274 0.93650 1.01897 0.98789 1.17169 0.82549 0.92420 0.95500 1.91541 1.50194 1.74350 1.94417 1.21194 1.00631 0.97665 0.98741 1.20831 0.91277 0.97533 0.98459 1.21166 1.01226 1.00147 0.95823 1.17141 0.83623 0.96829 0.90254 1.91516 1.53265 1.94601 1.71380 0.92888 0.93282 0.92861 0.92059 0.92491 0.89922 0.96520 0.92139 0.96689 0.92271 0.77191 0.87335 0.87202 0.83910 0.83900 0.84001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.02 37.16 0.34 -1.53 16 2 C -0.09 -1.45 2.27 -90.58 -0.21 -1.66 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 4 C -0.13 -2.37 5.36 -26.61 -0.14 -2.52 16 5 C 0.15 3.42 4.70 -3.71 -0.02 3.41 16 6 N -0.59 -15.37 2.86 -172.05 -0.49 -15.86 16 7 C -0.35 -10.11 9.49 -15.06 -0.14 -10.25 16 8 H 0.06 1.71 7.95 -52.49 -0.42 1.29 16 9 C -0.02 -0.69 4.67 -17.43 -0.08 -0.77 16 10 N -0.92 -27.79 12.38 55.49 0.69 -27.10 16 11 Si 1.06 26.04 29.99 -169.99 -5.10 20.94 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 C 0.14 3.24 6.12 -3.49 -0.02 3.22 16 16 C 0.13 2.44 2.08 -67.59 -0.14 2.30 16 17 H 0.09 1.86 7.58 -51.93 -0.39 1.46 16 18 N -0.72 -10.42 4.37 -53.47 -0.23 -10.65 16 19 C 0.51 8.05 7.79 -10.98 -0.09 7.96 16 20 O -0.53 -10.80 15.70 5.56 0.09 -10.71 16 21 C -0.10 -1.19 5.48 -29.04 -0.16 -1.35 16 22 C -0.13 -1.65 4.39 -104.49 -0.46 -2.11 16 23 C 0.14 1.74 7.24 -39.43 -0.29 1.45 16 24 F -0.13 -1.68 16.47 2.25 0.04 -1.65 16 25 C -0.16 -1.55 10.02 -39.51 -0.40 -1.95 16 26 C -0.06 -0.50 10.04 -39.61 -0.40 -0.90 16 27 C -0.16 -1.50 10.03 -39.50 -0.40 -1.90 16 28 C 0.14 1.64 7.24 -39.42 -0.29 1.35 16 29 F -0.13 -1.57 16.48 2.25 0.04 -1.54 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.55 7.35 -51.93 -0.38 0.17 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.08 2.18 6.24 -51.93 -0.32 1.85 16 36 H 0.02 0.39 7.88 -51.93 -0.41 -0.01 16 37 H 0.27 8.15 6.74 -40.82 -0.28 7.87 16 38 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.06 1.46 7.93 -51.93 -0.41 1.05 16 40 H 0.39 4.32 8.31 -40.82 -0.34 3.98 16 41 H 0.11 0.97 7.64 -51.93 -0.40 0.58 16 42 H 0.11 1.05 7.63 -51.93 -0.40 0.65 16 43 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 44 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 45 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 373.78 15.07 5.63 5.63 Total: -1.00 -34.70 373.78 -8.57 -43.27 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.35 Total: 2.91 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -2.88 Total: -5.24 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: -0.04 Total: -53.62 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.07 Total: -3.19 kcal Atomic # 14 Polarization: 26.04 SS G_CDS: -5.10 Total: 20.94 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.70 -8.57 -43.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968033417.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.319 kcal (2) G-P(sol) polarization free energy of solvation -34.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds