Wall clock time and date at job start Tue Mar 31 2020 22:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.45681 * 2 1 4 4 C 1.53041 * 109.45939 * 119.97137 * 2 1 3 5 5 C 1.53193 * 109.30945 * 181.38751 * 4 2 1 6 6 N 1.46932 * 108.77428 * 305.36377 * 5 4 2 7 7 C 1.36928 * 120.62883 * 233.58787 * 6 5 4 8 8 H 1.08002 * 120.00095 * 153.45652 * 7 6 5 9 9 C 1.38813 * 120.00321 * 333.46004 * 7 6 5 10 10 N 1.31623 * 119.99903 * 334.06765 * 9 7 6 11 11 Si 1.86804 * 120.00151 * 154.07324 * 9 7 6 12 12 H 1.48502 * 109.47036 * 179.97438 * 11 9 7 13 13 H 1.48492 * 109.46770 * 299.99638 * 11 9 7 14 14 H 1.48498 * 109.47068 * 60.00171 * 11 9 7 15 15 C 1.46921 * 118.73572 * 53.86298 * 6 5 4 16 16 C 1.53035 * 109.45758 * 240.04002 * 2 1 3 17 17 H 1.08996 * 109.50139 * 298.56282 * 16 2 1 18 18 N 1.46502 * 109.49847 * 58.63496 * 16 2 1 19 19 C 1.34779 * 119.99832 * 204.99955 * 18 16 2 20 20 O 1.21281 * 119.99859 * 359.97438 * 19 18 16 21 21 C 1.50701 * 120.00100 * 179.97438 * 19 18 16 22 22 C 1.50699 * 109.47450 * 179.97438 * 21 19 18 23 23 C 1.38413 * 120.02552 * 269.72645 * 22 21 19 24 24 F 1.35099 * 120.01274 * 359.97438 * 23 22 21 25 25 C 1.38476 * 119.97482 * 179.78941 * 23 22 21 26 26 C 1.38203 * 120.02509 * 0.48508 * 25 23 22 27 27 C 1.38208 * 120.05055 * 359.74383 * 26 25 23 28 28 C 1.38423 * 120.02227 * 89.99833 * 22 21 19 29 29 F 1.35098 * 120.01288 * 359.97438 * 28 22 21 30 30 H 1.09004 * 109.47088 * 300.02709 * 1 2 3 31 31 H 1.08994 * 109.47036 * 60.03003 * 1 2 3 32 32 H 1.08997 * 109.46742 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.49582 * 61.43351 * 4 2 1 34 34 H 1.09000 * 109.50047 * 301.33522 * 4 2 1 35 35 H 1.09000 * 109.58243 * 185.58397 * 5 4 2 36 36 H 1.08998 * 109.70395 * 65.22183 * 5 4 2 37 37 H 0.97001 * 119.99894 * 354.37781 * 10 9 7 38 38 H 1.09001 * 109.58789 * 65.93044 * 15 6 5 39 39 H 1.09007 * 109.58800 * 186.34787 * 15 6 5 40 40 H 0.97002 * 120.00402 * 24.99243 * 18 16 2 41 41 H 1.09001 * 109.47165 * 300.00207 * 21 19 18 42 42 H 1.09001 * 109.47354 * 59.99591 * 21 19 18 43 43 H 1.08006 * 119.98546 * 180.22687 * 25 23 22 44 44 H 1.08000 * 119.97863 * 179.77016 * 26 25 23 45 45 H 1.08004 * 119.98916 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7209 1.2500 5 6 3.5715 -0.6886 1.2642 6 7 4.0679 -1.2488 -0.0002 7 6 4.9765 -2.2732 -0.0003 8 1 5.0219 -2.9546 -0.8370 9 6 5.8391 -2.4361 1.0750 10 7 6.1640 -1.4012 1.8206 11 14 6.5388 -4.1239 1.4639 12 1 7.4265 -4.0304 2.6506 13 1 5.4275 -5.0666 1.7495 14 1 7.3191 -4.6163 0.3003 15 6 3.5756 -0.6846 -1.2643 16 6 2.0399 -0.7206 -1.2501 17 1 1.6979 -1.7555 -1.2385 18 7 1.5250 -0.0488 -2.4459 19 6 1.3965 -0.7325 -3.6003 20 8 1.7076 -1.9038 -3.6492 21 6 0.8664 -0.0417 -4.8302 22 6 0.8224 -1.0195 -5.9761 23 6 1.9163 -1.1551 -6.8133 24 9 3.0239 -0.4104 -6.6039 25 6 1.8763 -2.0570 -7.8632 26 6 0.7411 -2.8145 -8.0814 27 6 -0.3535 -2.6765 -7.2490 28 6 -0.3141 -1.7787 -6.1955 29 9 -1.3843 -1.6437 -5.3821 30 1 -0.3633 0.5143 0.8898 31 1 -0.3633 0.5133 -0.8902 32 1 -0.3633 -1.0277 0.0005 33 1 1.6979 -1.7557 1.2381 34 1 1.6573 -0.2209 2.1399 35 1 3.9417 -1.2847 2.0982 36 1 3.9164 0.3401 1.3685 37 1 5.8673 -0.5119 1.5718 38 1 3.9189 0.3452 -1.3631 39 1 3.9488 -1.2779 -2.0992 40 1 1.2765 0.8880 -2.4069 41 1 -0.1382 0.3322 -4.6324 42 1 1.5197 0.7916 -5.0890 43 1 2.7312 -2.1656 -8.5144 44 1 0.7094 -3.5150 -8.9028 45 1 -1.2400 -3.2693 -7.4202 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968033417.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:49 Heat of formation + Delta-G solvation = -111.049261 kcal Electronic energy + Delta-G solvation = -29915.134744 eV Core-core repulsion = 25567.747896 eV Total energy + Delta-G solvation = -4347.386848 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.09446 -50.07637 -41.28896 -39.91659 -39.16493 -36.48128 -34.64193 -34.05437 -33.00349 -31.28803 -30.91935 -29.17678 -28.26253 -25.86795 -24.39290 -23.91564 -23.14988 -22.69834 -21.57674 -20.92528 -19.45532 -19.21073 -18.44672 -18.28128 -17.54291 -16.90607 -16.70836 -16.63835 -16.41104 -16.34918 -15.96991 -15.95324 -15.49151 -15.46174 -15.22030 -15.13739 -14.71960 -14.44367 -14.09188 -14.03890 -13.79757 -13.48520 -13.37767 -12.97881 -12.94694 -12.72754 -12.65969 -12.58303 -12.37542 -12.30453 -11.93135 -11.90765 -11.69875 -11.56747 -11.27554 -11.05063 -10.63600 -10.16466 -9.92572 -9.77031 -8.99127 -8.32764 -5.45761 -0.07806 -0.04118 1.52997 1.54686 1.60730 1.81043 2.02495 2.41600 2.61677 2.86849 3.14205 3.29387 3.38668 3.49733 3.61478 3.63410 3.83691 3.86621 3.91167 3.98219 4.19891 4.27783 4.33746 4.34463 4.37720 4.50988 4.56074 4.78342 4.79169 4.80735 4.82306 4.89881 4.97154 5.00264 5.02480 5.04203 5.10678 5.17693 5.20543 5.33668 5.35821 5.52095 5.75600 5.76111 6.33485 6.49894 6.98709 7.21169 7.71256 8.12046 8.92354 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013149 B = 0.003226 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.976693 B = 8676.265001 C = 9817.699841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.082 4.082 3 H 0.084 0.916 4 C -0.118 4.118 5 C 0.150 3.850 6 N -0.615 5.615 7 C -0.363 4.363 8 H 0.035 0.965 9 C -0.067 4.067 10 N -0.934 5.934 11 Si 1.112 2.888 12 H -0.283 1.283 13 H -0.281 1.281 14 H -0.280 1.280 15 C 0.147 3.853 16 C 0.152 3.848 17 H 0.051 0.949 18 N -0.705 5.705 19 C 0.510 3.490 20 O -0.581 6.581 21 C -0.095 4.095 22 C -0.156 4.156 23 C 0.112 3.888 24 F -0.142 7.142 25 C -0.165 4.165 26 C -0.052 4.052 27 C -0.162 4.162 28 C 0.118 3.882 29 F -0.137 7.137 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.040 0.960 33 H 0.045 0.955 34 H 0.089 0.911 35 H 0.047 0.953 36 H 0.014 0.986 37 H 0.256 0.744 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.417 0.583 41 H 0.137 0.863 42 H 0.129 0.871 43 H 0.163 0.837 44 H 0.184 0.816 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.976 5.004 -18.699 26.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.101 4.101 3 H 0.103 0.897 4 C -0.158 4.158 5 C 0.025 3.975 6 N -0.340 5.340 7 C -0.493 4.493 8 H 0.053 0.947 9 C -0.264 4.264 10 N -0.575 5.575 11 Si 0.936 3.064 12 H -0.208 1.208 13 H -0.207 1.207 14 H -0.206 1.206 15 C 0.020 3.980 16 C 0.045 3.955 17 H 0.069 0.931 18 N -0.357 5.357 19 C 0.297 3.703 20 O -0.461 6.461 21 C -0.135 4.135 22 C -0.158 4.158 23 C 0.093 3.907 24 F -0.120 7.120 25 C -0.183 4.183 26 C -0.070 4.070 27 C -0.180 4.180 28 C 0.099 3.901 29 F -0.116 7.116 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.107 0.893 35 H 0.066 0.934 36 H 0.032 0.968 37 H 0.066 0.934 38 H 0.040 0.960 39 H 0.041 0.959 40 H 0.254 0.746 41 H 0.155 0.845 42 H 0.147 0.853 43 H 0.181 0.819 44 H 0.201 0.799 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -16.812 3.363 -17.619 24.584 hybrid contribution -0.368 1.383 -0.690 1.589 sum -17.180 4.746 -18.309 25.551 Atomic orbital electron populations 1.21768 0.92578 1.01689 1.03136 1.21241 0.97250 0.99359 0.92286 0.89745 1.21994 0.95563 1.00085 0.98123 1.20958 0.92865 0.95331 0.88323 1.44277 1.48597 1.40277 1.00804 1.20134 1.14471 1.05944 1.08721 0.94704 1.27141 0.95467 1.07187 0.96568 1.70904 1.43851 0.99253 1.43508 0.82910 0.75889 0.71328 0.76303 1.20799 1.20731 1.20606 1.21285 0.93276 0.95380 0.88044 1.21275 0.93219 0.96222 0.84758 0.93064 1.45832 1.65522 1.15117 1.09237 1.21037 0.77241 0.86821 0.85205 1.90731 1.51327 1.18708 1.85285 1.20551 1.06300 0.97839 0.88788 1.19441 0.94231 1.02832 0.99287 1.17564 0.82380 0.93719 0.97039 1.91493 1.50928 1.74933 1.94694 1.21577 1.01973 0.96730 0.98039 1.21320 0.89904 0.97027 0.98758 1.21584 1.02520 0.99163 0.94742 1.17450 0.83481 0.97898 0.91266 1.91487 1.53492 1.94773 1.71805 0.90562 0.91002 0.94037 0.93592 0.89252 0.93434 0.96804 0.93433 0.95999 0.95891 0.74568 0.84509 0.85338 0.81945 0.79907 0.81459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 9.02 71.99 0.65 -2.41 16 2 C -0.08 -2.48 2.27 -10.76 -0.02 -2.51 16 3 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 4 C -0.12 -4.31 5.36 30.67 0.16 -4.14 16 5 C 0.15 7.21 4.70 86.36 0.41 7.61 16 6 N -0.61 -33.12 2.86 -698.25 -2.00 -35.12 16 7 C -0.36 -22.13 9.49 84.04 0.80 -21.33 16 8 H 0.04 2.23 7.95 -2.91 -0.02 2.20 16 9 C -0.07 -3.98 4.67 84.86 0.40 -3.58 16 10 N -0.93 -58.17 12.38 21.65 0.27 -57.90 16 11 Si 1.11 53.65 29.99 68.60 2.06 55.71 16 12 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 13 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 14 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 15 C 0.15 6.86 6.12 86.51 0.53 7.39 16 16 C 0.15 5.59 2.08 45.21 0.09 5.68 16 17 H 0.05 2.28 7.58 -2.39 -0.02 2.27 16 18 N -0.70 -19.80 4.37 -441.47 -1.93 -21.73 16 19 C 0.51 15.99 7.79 87.66 0.68 16.67 16 20 O -0.58 -24.75 15.70 -3.03 -0.05 -24.80 16 21 C -0.10 -2.08 5.48 29.10 0.16 -1.92 16 22 C -0.16 -3.77 4.39 -19.78 -0.09 -3.85 16 23 C 0.11 2.71 7.24 22.37 0.16 2.87 16 24 F -0.14 -3.86 16.47 44.97 0.74 -3.11 16 25 C -0.16 -2.89 10.02 22.32 0.22 -2.66 16 26 C -0.05 -0.69 10.04 22.25 0.22 -0.46 16 27 C -0.16 -2.59 10.03 22.32 0.22 -2.37 16 28 C 0.12 2.64 7.24 22.37 0.16 2.80 16 29 F -0.14 -3.21 16.48 44.97 0.74 -2.47 16 30 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.07 1.33 7.35 -2.39 -0.02 1.31 16 32 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 35 H 0.05 2.59 6.24 -2.39 -0.01 2.57 16 36 H 0.01 0.67 7.88 -2.39 -0.02 0.65 16 37 H 0.26 16.13 6.74 -92.71 -0.62 15.50 16 38 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.02 1.20 7.93 -2.38 -0.02 1.18 16 40 H 0.42 8.05 8.31 -92.71 -0.77 7.28 16 41 H 0.14 2.15 7.64 -2.39 -0.02 2.13 16 42 H 0.13 2.28 7.63 -2.39 -0.02 2.26 16 43 H 0.16 2.08 8.06 -2.91 -0.02 2.05 16 44 H 0.18 0.89 8.06 -2.91 -0.02 0.87 16 45 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -81.52 373.78 4.99 -76.53 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.39 Total: 15.11 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: 4.76 Total: -2.21 kcal Atomic # 7 Polarization: -111.10 SS G_CDS: -3.65 Total: -114.75 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.05 Total: -24.80 kcal Atomic # 9 Polarization: -7.06 SS G_CDS: 1.48 Total: -5.58 kcal Atomic # 14 Polarization: 53.65 SS G_CDS: 2.06 Total: 55.71 kcal Total: -81.52 4.99 -76.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968033417.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.519 kcal (2) G-P(sol) polarization free energy of solvation -81.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds