Wall clock time and date at job start Tue Mar 31 2020 22:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.45968 * 2 1 4 4 C 1.53038 * 109.46260 * 119.96222 * 2 1 3 5 5 C 1.53189 * 109.31086 * 181.38713 * 4 2 1 6 6 N 1.46931 * 108.77650 * 305.36187 * 5 4 2 7 7 C 1.36939 * 120.62979 * 233.59210 * 6 5 4 8 8 H 1.07997 * 120.00292 * 27.69412 * 7 6 5 9 9 C 1.38812 * 119.99449 * 207.70104 * 7 6 5 10 10 N 1.31615 * 120.00661 * 17.34544 * 9 7 6 11 11 Si 1.86805 * 119.99609 * 197.34768 * 9 7 6 12 12 H 1.48504 * 109.47059 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47085 * 119.99984 * 11 9 7 14 14 H 1.48501 * 109.46661 * 239.99883 * 11 9 7 15 15 C 1.46925 * 118.73708 * 53.60664 * 6 5 4 16 16 C 1.53044 * 109.45730 * 240.03136 * 2 1 3 17 17 H 1.08995 * 109.50162 * 58.62591 * 16 2 1 18 18 N 1.46500 * 109.49619 * 298.56257 * 16 2 1 19 19 C 1.34777 * 120.00145 * 155.27623 * 18 16 2 20 20 O 1.21284 * 119.99560 * 359.72685 * 19 18 16 21 21 C 1.50702 * 120.00128 * 179.72212 * 19 18 16 22 22 C 1.50697 * 109.46812 * 180.02562 * 21 19 18 23 23 C 1.38417 * 120.02797 * 269.72441 * 22 21 19 24 24 F 1.35112 * 120.00873 * 359.97438 * 23 22 21 25 25 C 1.38470 * 119.97679 * 179.74774 * 23 22 21 26 26 C 1.38209 * 120.02352 * 0.50814 * 25 23 22 27 27 C 1.38201 * 120.04942 * 359.77000 * 26 25 23 28 28 C 1.38420 * 120.02508 * 90.00387 * 22 21 19 29 29 F 1.35098 * 120.01033 * 359.97438 * 28 22 21 30 30 H 1.08999 * 109.46774 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46531 * 299.97158 * 1 2 3 32 32 H 1.08995 * 109.47294 * 59.97096 * 1 2 3 33 33 H 1.09008 * 109.49370 * 301.33322 * 4 2 1 34 34 H 1.08990 * 109.50023 * 61.40170 * 4 2 1 35 35 H 1.09000 * 109.59197 * 65.14678 * 5 4 2 36 36 H 1.09000 * 109.58390 * 185.43409 * 5 4 2 37 37 H 0.96991 * 120.00536 * 180.02562 * 10 9 7 38 38 H 1.09001 * 109.58565 * 186.60135 * 15 6 5 39 39 H 1.09007 * 109.58326 * 66.18532 * 15 6 5 40 40 H 0.97004 * 119.99738 * 335.00354 * 18 16 2 41 41 H 1.09000 * 109.46847 * 300.00371 * 21 19 18 42 42 H 1.09000 * 109.46602 * 60.00549 * 21 19 18 43 43 H 1.08004 * 119.98829 * 180.27661 * 25 23 22 44 44 H 1.08003 * 119.97424 * 179.74371 * 26 25 23 45 45 H 1.08001 * 119.98583 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7206 1.2501 5 6 3.5714 -0.6884 1.2642 6 7 4.0679 -1.2487 -0.0001 7 6 4.9765 -2.2733 0.0000 8 1 5.0097 -2.9656 0.8283 9 6 5.8549 -2.4220 -1.0645 10 7 6.0605 -1.4202 -1.8930 11 14 6.7452 -4.0440 -1.3211 12 1 6.3438 -5.0023 -0.2600 13 1 6.3884 -4.5995 -2.6513 14 1 8.2117 -3.8194 -1.2557 15 6 3.5713 -0.6887 -1.2643 16 6 2.0398 -0.7208 -1.2501 17 1 1.6567 -0.2213 -2.1399 18 7 1.5801 -2.1117 -1.2341 19 6 1.4568 -2.7941 -2.3898 20 8 1.7217 -2.2550 -3.4435 21 6 0.9899 -4.2268 -2.3729 22 6 0.9389 -4.7552 -3.7833 23 6 -0.2223 -4.6341 -4.5268 24 9 -1.3110 -4.0425 -3.9881 25 6 -0.2663 -5.1153 -5.8244 26 6 0.8454 -5.7257 -6.3737 27 6 2.0035 -5.8523 -5.6303 28 6 2.0516 -5.3672 -4.3343 29 9 3.1840 -5.4906 -3.6080 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5134 0.8903 32 1 -0.3633 0.5143 -0.8897 33 1 1.6573 -0.2204 2.1398 34 1 1.6975 -1.7553 1.2387 35 1 3.9144 0.3411 1.3671 36 1 3.9417 -1.2822 2.0999 37 1 6.6740 -1.5242 -2.6370 38 1 3.9417 -1.2846 -2.0985 39 1 3.9143 0.3409 -1.3676 40 1 1.3683 -2.5429 -0.3914 41 1 1.6834 -4.8280 -1.7848 42 1 -0.0040 -4.2798 -1.9285 43 1 -1.1709 -5.0169 -6.4063 44 1 0.8089 -6.1045 -7.3845 45 1 2.8715 -6.3299 -6.0604 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968033418.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:53 Heat of formation + Delta-G solvation = -84.765748 kcal Electronic energy + Delta-G solvation = -30987.750662 eV Core-core repulsion = 26641.503554 eV Total energy + Delta-G solvation = -4346.247109 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.01463 -48.82516 -39.72135 -38.75047 -37.42814 -34.09826 -32.96796 -32.68873 -30.99089 -30.30475 -29.39313 -27.70876 -26.98025 -24.04465 -22.87479 -22.72462 -21.92069 -21.06245 -20.22814 -18.64100 -18.11702 -17.33453 -17.05888 -16.62225 -16.08208 -15.68721 -15.54267 -15.16485 -15.09734 -14.90571 -14.39171 -14.34037 -13.91327 -13.76630 -13.63235 -13.36001 -13.19422 -12.99660 -12.75734 -12.56859 -12.20497 -11.99880 -11.89496 -11.62182 -11.51929 -11.37523 -11.32033 -11.02903 -10.87909 -10.69324 -10.47586 -10.16902 -9.89357 -9.66646 -9.48045 -9.39077 -8.82846 -8.74884 -8.41797 -8.30581 -6.61442 -5.72993 -3.15801 0.93751 0.97037 3.19835 3.28115 3.42079 3.49047 3.51653 3.86087 3.91898 4.41188 4.42805 4.54461 4.62743 4.74729 5.08552 5.19522 5.26484 5.31412 5.37867 5.39506 5.46671 5.50440 5.59084 5.77674 5.87343 5.89846 5.90921 5.95420 6.01817 6.03575 6.08438 6.16922 6.32095 6.39073 6.46649 6.57311 6.69276 6.73790 6.77505 6.91134 7.03886 7.42074 7.71557 7.84811 8.14223 8.50378 8.83978 9.25461 9.89960 10.45402 11.34806 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010254 B = 0.005367 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2729.861220 B = 5215.496410 C = 7338.714961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 H 0.077 0.923 4 C -0.128 4.128 5 C 0.142 3.858 6 N -0.587 5.587 7 C -0.254 4.254 8 H 0.064 0.936 9 C 0.008 3.992 10 N -0.897 5.897 11 Si 0.892 3.108 12 H -0.278 1.278 13 H -0.286 1.286 14 H -0.291 1.291 15 C 0.160 3.840 16 C 0.127 3.873 17 H 0.074 0.926 18 N -0.697 5.697 19 C 0.519 3.481 20 O -0.541 6.541 21 C -0.106 4.106 22 C -0.129 4.129 23 C 0.139 3.861 24 F -0.131 7.131 25 C -0.168 4.168 26 C -0.065 4.065 27 C -0.166 4.166 28 C 0.146 3.854 29 F -0.121 7.121 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.017 0.983 36 H 0.053 0.947 37 H 0.253 0.747 38 H 0.097 0.903 39 H 0.024 0.976 40 H 0.395 0.605 41 H 0.111 0.889 42 H 0.104 0.896 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.865 -6.573 -3.087 16.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.095 0.905 4 C -0.168 4.168 5 C 0.016 3.984 6 N -0.310 5.310 7 C -0.383 4.383 8 H 0.081 0.919 9 C -0.191 4.191 10 N -0.541 5.541 11 Si 0.722 3.278 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.218 1.218 15 C 0.034 3.966 16 C 0.021 3.979 17 H 0.092 0.908 18 N -0.347 5.347 19 C 0.304 3.696 20 O -0.418 6.418 21 C -0.146 4.146 22 C -0.131 4.131 23 C 0.120 3.880 24 F -0.109 7.109 25 C -0.187 4.187 26 C -0.083 4.083 27 C -0.185 4.185 28 C 0.127 3.873 29 F -0.099 7.099 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.035 0.965 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.115 0.885 39 H 0.042 0.958 40 H 0.229 0.771 41 H 0.129 0.871 42 H 0.123 0.877 43 H 0.158 0.842 44 H 0.159 0.841 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -14.535 -6.142 -3.909 16.256 hybrid contribution 0.547 -0.873 0.467 1.131 sum -13.988 -7.014 -3.443 16.022 Atomic orbital electron populations 1.21843 0.96012 1.01343 1.00898 1.21313 0.94574 0.99857 0.95543 0.90515 1.22076 0.99234 0.99406 0.96059 1.20922 0.90706 0.96494 0.90293 1.43983 1.48248 1.39618 0.99121 1.19104 1.09984 1.03098 1.06153 0.91859 1.24983 0.97159 0.97127 0.99811 1.70005 1.37443 1.28940 1.17683 0.86380 0.79163 0.84110 0.78121 1.20304 1.21199 1.21817 1.21200 0.86752 0.97696 0.90996 1.21776 0.98855 0.80485 0.96787 0.90763 1.45757 1.66969 1.13969 1.08019 1.20006 0.77980 0.87211 0.84420 1.90690 1.50370 1.69895 1.30846 1.20536 1.04675 0.95709 0.93677 1.19325 0.92927 1.03219 0.97648 1.17122 0.82952 0.95945 0.92017 1.91503 1.51932 1.81383 1.86122 1.21099 1.00959 1.02702 0.93911 1.20778 0.91189 0.96660 0.99717 1.21191 1.00415 1.03908 0.92937 1.17247 0.82037 0.97976 0.90084 1.91604 1.47915 1.93457 1.76941 0.93047 0.93193 0.93151 0.92834 0.92714 0.96521 0.92858 0.93694 0.88460 0.95842 0.77069 0.87119 0.87745 0.84213 0.84103 0.84073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.05 37.16 0.34 -1.54 16 2 C -0.09 -1.48 2.48 -90.58 -0.22 -1.71 16 3 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 4 C -0.13 -2.03 5.20 -26.61 -0.14 -2.17 16 5 C 0.14 2.85 6.51 -3.71 -0.02 2.82 16 6 N -0.59 -14.30 2.91 -172.32 -0.50 -14.80 16 7 C -0.25 -6.91 9.59 -15.06 -0.14 -7.05 16 8 H 0.06 1.70 7.89 -52.49 -0.41 1.28 16 9 C 0.01 0.24 4.91 -17.43 -0.09 0.15 16 10 N -0.90 -26.90 11.19 55.49 0.62 -26.28 16 11 Si 0.89 22.46 29.59 -169.99 -5.03 17.43 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 14 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 15 C 0.16 3.90 4.91 -3.71 -0.02 3.88 16 16 C 0.13 2.45 2.24 -67.81 -0.15 2.30 16 17 H 0.07 1.51 7.58 -51.93 -0.39 1.11 16 18 N -0.70 -12.55 4.25 -53.69 -0.23 -12.77 16 19 C 0.52 9.97 7.79 -10.98 -0.09 9.89 16 20 O -0.54 -12.49 15.70 5.55 0.09 -12.41 16 21 C -0.11 -1.63 5.48 -29.04 -0.16 -1.79 16 22 C -0.13 -2.01 4.38 -104.49 -0.46 -2.46 16 23 C 0.14 1.93 7.24 -39.43 -0.29 1.65 16 24 F -0.13 -1.83 16.47 2.25 0.04 -1.79 16 25 C -0.17 -1.86 10.02 -39.51 -0.40 -2.26 16 26 C -0.07 -0.67 10.04 -39.61 -0.40 -1.06 16 27 C -0.17 -2.08 10.02 -39.51 -0.40 -2.47 16 28 C 0.15 2.33 7.24 -39.43 -0.29 2.04 16 29 F -0.12 -2.27 16.48 2.25 0.04 -2.23 16 30 H 0.05 0.65 7.54 -51.93 -0.39 0.26 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 34 H 0.05 0.84 6.40 -51.93 -0.33 0.51 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.05 1.05 7.94 -51.93 -0.41 0.64 16 37 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.10 2.80 6.04 -51.93 -0.31 2.49 16 39 H 0.02 0.61 8.14 -51.92 -0.42 0.18 16 40 H 0.39 6.28 6.64 -40.82 -0.27 6.01 16 41 H 0.11 1.65 7.64 -51.93 -0.40 1.25 16 42 H 0.10 1.29 7.63 -51.93 -0.40 0.89 16 43 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 44 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 45 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 371.66 15.07 5.60 5.60 Total: -1.00 -33.28 371.66 -8.55 -41.83 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -6.26 Total: 5.21 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -2.91 Total: 0.22 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: -0.11 Total: -53.86 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.09 Total: -12.41 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.07 Total: -4.02 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.03 Total: 17.43 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.28 -8.55 -41.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968033418.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.932 kcal (2) G-P(sol) polarization free energy of solvation -33.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds