Wall clock time and date at job start Tue Mar 31 2020 22:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.45968 * 2 1 4 4 C 1.53038 * 109.46260 * 119.96222 * 2 1 3 5 5 C 1.53189 * 109.31086 * 181.38713 * 4 2 1 6 6 N 1.46931 * 108.77650 * 305.36187 * 5 4 2 7 7 C 1.36939 * 120.62979 * 233.59210 * 6 5 4 8 8 H 1.07997 * 120.00292 * 27.69412 * 7 6 5 9 9 C 1.38812 * 119.99449 * 207.70104 * 7 6 5 10 10 N 1.31615 * 120.00661 * 17.34544 * 9 7 6 11 11 Si 1.86805 * 119.99609 * 197.34768 * 9 7 6 12 12 H 1.48504 * 109.47059 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47085 * 119.99984 * 11 9 7 14 14 H 1.48501 * 109.46661 * 239.99883 * 11 9 7 15 15 C 1.46925 * 118.73708 * 53.60664 * 6 5 4 16 16 C 1.53044 * 109.45730 * 240.03136 * 2 1 3 17 17 H 1.08995 * 109.50162 * 58.62591 * 16 2 1 18 18 N 1.46500 * 109.49619 * 298.56257 * 16 2 1 19 19 C 1.34777 * 120.00145 * 155.27623 * 18 16 2 20 20 O 1.21284 * 119.99560 * 359.72685 * 19 18 16 21 21 C 1.50702 * 120.00128 * 179.72212 * 19 18 16 22 22 C 1.50697 * 109.46812 * 180.02562 * 21 19 18 23 23 C 1.38417 * 120.02797 * 269.72441 * 22 21 19 24 24 F 1.35112 * 120.00873 * 359.97438 * 23 22 21 25 25 C 1.38470 * 119.97679 * 179.74774 * 23 22 21 26 26 C 1.38209 * 120.02352 * 0.50814 * 25 23 22 27 27 C 1.38201 * 120.04942 * 359.77000 * 26 25 23 28 28 C 1.38420 * 120.02508 * 90.00387 * 22 21 19 29 29 F 1.35098 * 120.01033 * 359.97438 * 28 22 21 30 30 H 1.08999 * 109.46774 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46531 * 299.97158 * 1 2 3 32 32 H 1.08995 * 109.47294 * 59.97096 * 1 2 3 33 33 H 1.09008 * 109.49370 * 301.33322 * 4 2 1 34 34 H 1.08990 * 109.50023 * 61.40170 * 4 2 1 35 35 H 1.09000 * 109.59197 * 65.14678 * 5 4 2 36 36 H 1.09000 * 109.58390 * 185.43409 * 5 4 2 37 37 H 0.96991 * 120.00536 * 180.02562 * 10 9 7 38 38 H 1.09001 * 109.58565 * 186.60135 * 15 6 5 39 39 H 1.09007 * 109.58326 * 66.18532 * 15 6 5 40 40 H 0.97004 * 119.99738 * 335.00354 * 18 16 2 41 41 H 1.09000 * 109.46847 * 300.00371 * 21 19 18 42 42 H 1.09000 * 109.46602 * 60.00549 * 21 19 18 43 43 H 1.08004 * 119.98829 * 180.27661 * 25 23 22 44 44 H 1.08003 * 119.97424 * 179.74371 * 26 25 23 45 45 H 1.08001 * 119.98583 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7206 1.2501 5 6 3.5714 -0.6884 1.2642 6 7 4.0679 -1.2487 -0.0001 7 6 4.9765 -2.2733 0.0000 8 1 5.0097 -2.9656 0.8283 9 6 5.8549 -2.4220 -1.0645 10 7 6.0605 -1.4202 -1.8930 11 14 6.7452 -4.0440 -1.3211 12 1 6.3438 -5.0023 -0.2600 13 1 6.3884 -4.5995 -2.6513 14 1 8.2117 -3.8194 -1.2557 15 6 3.5713 -0.6887 -1.2643 16 6 2.0398 -0.7208 -1.2501 17 1 1.6567 -0.2213 -2.1399 18 7 1.5801 -2.1117 -1.2341 19 6 1.4568 -2.7941 -2.3898 20 8 1.7217 -2.2550 -3.4435 21 6 0.9899 -4.2268 -2.3729 22 6 0.9389 -4.7552 -3.7833 23 6 -0.2223 -4.6341 -4.5268 24 9 -1.3110 -4.0425 -3.9881 25 6 -0.2663 -5.1153 -5.8244 26 6 0.8454 -5.7257 -6.3737 27 6 2.0035 -5.8523 -5.6303 28 6 2.0516 -5.3672 -4.3343 29 9 3.1840 -5.4906 -3.6080 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5134 0.8903 32 1 -0.3633 0.5143 -0.8897 33 1 1.6573 -0.2204 2.1398 34 1 1.6975 -1.7553 1.2387 35 1 3.9144 0.3411 1.3671 36 1 3.9417 -1.2822 2.0999 37 1 6.6740 -1.5242 -2.6370 38 1 3.9417 -1.2846 -2.0985 39 1 3.9143 0.3409 -1.3676 40 1 1.3683 -2.5429 -0.3914 41 1 1.6834 -4.8280 -1.7848 42 1 -0.0040 -4.2798 -1.9285 43 1 -1.1709 -5.0169 -6.4063 44 1 0.8089 -6.1045 -7.3845 45 1 2.8715 -6.3299 -6.0604 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968033418.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:52 Heat of formation + Delta-G solvation = -104.841481 kcal Electronic energy + Delta-G solvation = -30988.621212 eV Core-core repulsion = 26641.503554 eV Total energy + Delta-G solvation = -4347.117658 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.09655 -50.04909 -41.21324 -39.87963 -38.93902 -35.93748 -34.39190 -33.99256 -32.83508 -31.28201 -30.98709 -29.10859 -28.45155 -25.84051 -24.12640 -23.89669 -23.25465 -22.74562 -21.59896 -20.29555 -19.19286 -18.70304 -18.43334 -18.32629 -17.21972 -16.93731 -16.82754 -16.64255 -16.42552 -16.34100 -15.96284 -15.69897 -15.47846 -15.28959 -14.88394 -14.84814 -14.73980 -14.38573 -14.10992 -13.78373 -13.60775 -13.40174 -13.15415 -13.00748 -12.96438 -12.76645 -12.67773 -12.60073 -12.48645 -12.35510 -12.21188 -11.94393 -11.57164 -11.31602 -11.08047 -10.95540 -10.56555 -9.95568 -9.89497 -9.76587 -8.66495 -7.88281 -5.32489 -0.05880 -0.03704 1.36341 1.42137 1.48395 1.69704 2.20447 2.46460 2.53234 2.89362 3.28241 3.33753 3.40621 3.62956 3.67075 3.83749 3.86704 3.98672 4.00095 4.12462 4.19885 4.33956 4.37590 4.51886 4.66544 4.70954 4.77423 4.83441 4.84620 4.91215 4.95108 5.00742 5.03582 5.09168 5.16137 5.16873 5.23940 5.26135 5.46222 5.51676 5.59285 5.70203 5.73303 5.76894 6.37337 6.66407 7.12830 7.36037 7.86531 8.36946 9.16652 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010254 B = 0.005367 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2729.861220 B = 5215.496410 C = 7338.714961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.087 4.087 3 H 0.074 0.926 4 C -0.115 4.115 5 C 0.135 3.865 6 N -0.600 5.600 7 C -0.247 4.247 8 H 0.071 0.929 9 C -0.049 4.049 10 N -0.934 5.934 11 Si 0.947 3.053 12 H -0.259 1.259 13 H -0.301 1.301 14 H -0.291 1.291 15 C 0.171 3.829 16 C 0.138 3.862 17 H 0.060 0.940 18 N -0.688 5.688 19 C 0.511 3.489 20 O -0.586 6.586 21 C -0.099 4.099 22 C -0.152 4.152 23 C 0.123 3.877 24 F -0.134 7.134 25 C -0.156 4.156 26 C -0.050 4.050 27 C -0.167 4.167 28 C 0.104 3.896 29 F -0.150 7.150 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.012 0.988 36 H 0.058 0.942 37 H 0.244 0.756 38 H 0.047 0.953 39 H -0.006 1.006 40 H 0.407 0.593 41 H 0.110 0.890 42 H 0.136 0.864 43 H 0.175 0.825 44 H 0.188 0.812 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.775 -7.817 -2.462 19.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.106 4.106 3 H 0.093 0.907 4 C -0.154 4.154 5 C 0.010 3.990 6 N -0.323 5.323 7 C -0.377 4.377 8 H 0.089 0.911 9 C -0.244 4.244 10 N -0.580 5.580 11 Si 0.776 3.224 12 H -0.183 1.183 13 H -0.229 1.229 14 H -0.218 1.218 15 C 0.044 3.956 16 C 0.031 3.969 17 H 0.078 0.922 18 N -0.338 5.338 19 C 0.298 3.702 20 O -0.467 6.467 21 C -0.138 4.138 22 C -0.154 4.154 23 C 0.103 3.897 24 F -0.113 7.113 25 C -0.175 4.175 26 C -0.068 4.068 27 C -0.185 4.185 28 C 0.085 3.915 29 F -0.128 7.128 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.110 0.890 34 H 0.082 0.918 35 H 0.030 0.970 36 H 0.076 0.924 37 H 0.053 0.947 38 H 0.065 0.935 39 H 0.012 0.988 40 H 0.244 0.756 41 H 0.128 0.872 42 H 0.154 0.846 43 H 0.192 0.808 44 H 0.205 0.795 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -17.478 -7.402 -3.209 19.250 hybrid contribution 1.437 -0.449 0.240 1.525 sum -16.041 -7.850 -2.969 18.104 Atomic orbital electron populations 1.21753 0.92960 1.02239 1.02183 1.21269 0.96937 0.99029 0.93359 0.90736 1.21956 0.95485 1.00538 0.97425 1.21155 0.93816 0.95864 0.88135 1.44177 1.48038 1.39466 1.00621 1.19454 1.09173 1.03502 1.05594 0.91132 1.25661 0.98795 0.99624 1.00332 1.70172 1.38732 1.30775 1.18345 0.85500 0.78022 0.81347 0.77549 1.18265 1.22882 1.21826 1.20863 0.90226 0.94818 0.89675 1.21445 0.95056 0.81831 0.98524 0.92232 1.45675 1.66205 1.13461 1.08507 1.20755 0.77013 0.88602 0.83862 1.90658 1.52281 1.71219 1.32512 1.20517 1.06103 0.92605 0.94617 1.19442 0.93775 1.04201 0.97996 1.17377 0.82463 0.96734 0.93104 1.91487 1.51841 1.81582 1.86364 1.21586 1.02474 1.00677 0.92734 1.21321 0.89525 0.94811 1.01120 1.21555 1.02123 1.03161 0.91707 1.17754 0.81619 1.00549 0.91608 1.91519 1.49447 1.94008 1.77863 0.92341 0.90469 0.93364 0.89000 0.91785 0.97003 0.92359 0.94726 0.93478 0.98791 0.75575 0.87164 0.84584 0.80797 0.79510 0.82447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 9.05 71.98 0.65 -2.39 16 2 C -0.09 -2.59 2.48 -10.76 -0.03 -2.61 16 3 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 4 C -0.12 -3.28 5.20 30.67 0.16 -3.12 16 5 C 0.14 5.25 6.51 86.36 0.56 5.82 16 6 N -0.60 -29.72 2.91 -699.09 -2.04 -31.75 16 7 C -0.25 -13.65 9.59 84.03 0.81 -12.85 16 8 H 0.07 3.75 7.89 -2.91 -0.02 3.73 16 9 C -0.05 -2.87 4.91 84.86 0.42 -2.45 16 10 N -0.93 -59.16 11.19 21.65 0.24 -58.91 16 11 Si 0.95 47.80 29.59 68.60 2.03 49.83 16 12 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 13 H -0.30 -15.86 7.11 99.48 0.71 -15.15 16 14 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 15 C 0.17 8.75 4.91 86.36 0.42 9.18 16 16 C 0.14 5.42 2.24 45.07 0.10 5.52 16 17 H 0.06 2.52 7.58 -2.39 -0.02 2.50 16 18 N -0.69 -24.73 4.25 -442.16 -1.88 -26.61 16 19 C 0.51 20.10 7.79 87.66 0.68 20.78 16 20 O -0.59 -28.40 15.70 -3.04 -0.05 -28.44 16 21 C -0.10 -3.05 5.48 29.10 0.16 -2.89 16 22 C -0.15 -4.75 4.38 -19.78 -0.09 -4.84 16 23 C 0.12 3.25 7.24 22.37 0.16 3.41 16 24 F -0.13 -3.55 16.47 44.97 0.74 -2.81 16 25 C -0.16 -3.00 10.02 22.32 0.22 -2.78 16 26 C -0.05 -0.86 10.04 22.25 0.22 -0.64 16 27 C -0.17 -4.00 10.02 22.32 0.22 -3.77 16 28 C 0.10 3.39 7.24 22.37 0.16 3.55 16 29 F -0.15 -5.93 16.48 44.97 0.74 -5.19 16 30 H 0.06 1.26 7.54 -2.39 -0.02 1.24 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 34 H 0.06 1.74 6.40 -2.39 -0.02 1.73 16 35 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.06 2.19 7.94 -2.39 -0.02 2.17 16 37 H 0.24 15.23 8.31 -92.71 -0.77 14.46 16 38 H 0.05 2.90 6.04 -2.39 -0.01 2.88 16 39 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 40 H 0.41 12.38 6.64 -92.71 -0.62 11.76 16 41 H 0.11 3.36 7.64 -2.39 -0.02 3.34 16 42 H 0.14 3.18 7.63 -2.39 -0.02 3.16 16 43 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 44 H 0.19 1.49 8.06 -2.91 -0.02 1.46 16 45 H 0.16 3.12 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -78.90 371.66 5.04 -73.86 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.40 Total: 20.12 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 4.84 Total: 9.92 kcal Atomic # 7 Polarization: -113.61 SS G_CDS: -3.67 Total: -117.28 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.05 Total: -28.44 kcal Atomic # 9 Polarization: -9.49 SS G_CDS: 1.48 Total: -8.00 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.83 kcal Total: -78.90 5.04 -73.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968033418.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.979 kcal (2) G-P(sol) polarization free energy of solvation -78.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds