Wall clock time and date at job start Tue Mar 31 2020 22:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.44877 * 2 1 4 4 C 1.53040 * 109.45534 * 240.03598 * 2 1 3 5 5 C 1.53192 * 109.31226 * 178.61306 * 4 2 1 6 6 N 1.46938 * 108.77290 * 54.63712 * 5 4 2 7 7 C 1.36931 * 120.62947 * 126.41307 * 6 5 4 8 8 H 1.08003 * 120.00305 * 331.82787 * 7 6 5 9 9 C 1.38815 * 120.00023 * 151.82204 * 7 6 5 10 10 N 1.31622 * 119.99788 * 343.07022 * 9 7 6 11 11 Si 1.86796 * 120.00153 * 163.06416 * 9 7 6 12 12 H 1.48503 * 109.46644 * 90.00307 * 11 9 7 13 13 H 1.48501 * 109.47015 * 210.00206 * 11 9 7 14 14 H 1.48494 * 109.47130 * 330.00742 * 11 9 7 15 15 C 1.46921 * 118.73512 * 306.39014 * 6 5 4 16 16 C 1.53036 * 109.46242 * 119.96992 * 2 1 3 17 17 H 1.09007 * 109.49734 * 301.36658 * 16 2 1 18 18 N 1.46503 * 109.49854 * 61.43033 * 16 2 1 19 19 C 1.34772 * 119.99919 * 205.00291 * 18 16 2 20 20 O 1.21285 * 120.00448 * 0.02562 * 19 18 16 21 21 C 1.50706 * 119.99934 * 179.97438 * 19 18 16 22 22 C 1.50703 * 109.47039 * 179.97438 * 21 19 18 23 23 C 1.38250 * 119.96650 * 269.72641 * 22 21 19 24 24 C 1.38218 * 120.07207 * 179.76608 * 23 22 21 25 25 C 1.38419 * 119.99454 * 0.51523 * 24 23 22 26 26 F 1.35100 * 120.03309 * 179.72295 * 25 24 23 27 27 C 1.38649 * 119.93073 * 359.74005 * 25 24 23 28 28 F 1.35092 * 120.03347 * 180.02562 * 27 25 24 29 29 C 1.38212 * 119.95893 * 90.00486 * 22 21 19 30 30 H 1.09006 * 109.46505 * 300.03620 * 1 2 3 31 31 H 1.08997 * 109.47185 * 60.03028 * 1 2 3 32 32 H 1.08992 * 109.47574 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.50036 * 298.56298 * 4 2 1 34 34 H 1.09003 * 109.49966 * 58.66740 * 4 2 1 35 35 H 1.08999 * 109.58843 * 174.41874 * 5 4 2 36 36 H 1.09003 * 109.58933 * 294.70945 * 5 4 2 37 37 H 0.97004 * 119.99890 * 179.97438 * 10 9 7 38 38 H 1.09006 * 109.58632 * 293.82072 * 15 6 5 39 39 H 1.08999 * 109.58470 * 173.39771 * 15 6 5 40 40 H 0.96997 * 119.99746 * 24.99965 * 18 16 2 41 41 H 1.08996 * 109.47025 * 300.00179 * 21 19 18 42 42 H 1.08998 * 109.46674 * 60.00379 * 21 19 18 43 43 H 1.08002 * 119.96850 * 0.02808 * 23 22 21 44 44 H 1.08000 * 120.00625 * 180.25224 * 24 23 22 45 45 H 1.07997 * 120.00533 * 359.95443 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0397 -0.7207 -1.2501 5 6 3.5713 -0.6886 -1.2644 6 7 4.0678 -1.2490 -0.0001 7 6 4.9763 -2.2735 -0.0002 8 1 5.0043 -2.9704 -0.8249 9 6 5.8614 -2.4164 1.0595 10 7 6.0660 -1.4127 1.8860 11 14 6.7620 -4.0332 1.3127 12 1 8.0464 -4.0063 0.5678 13 1 7.0330 -4.2275 2.7598 14 1 5.9227 -5.1511 0.8117 15 6 3.5714 -0.6887 1.2641 16 6 2.0399 -0.7208 1.2500 17 1 1.6568 -0.2211 2.1398 18 7 1.5801 -2.1117 1.2341 19 6 1.4516 -2.7921 2.3904 20 8 1.7161 -2.2529 3.4441 21 6 0.9781 -4.2228 2.3741 22 6 0.9221 -4.7494 3.7850 23 6 2.0284 -5.3700 4.3349 24 6 1.9811 -5.8495 5.6303 25 6 0.8216 -5.7181 6.3749 26 9 0.7727 -6.1915 7.6393 27 6 -0.2896 -5.1005 5.8216 28 9 -1.4221 -4.9707 6.5466 29 6 -0.2371 -4.6166 4.5258 30 1 -0.3632 0.5144 0.8897 31 1 -0.3633 0.5133 -0.8902 32 1 -0.3634 -1.0276 0.0005 33 1 1.6977 -1.7556 -1.2384 34 1 1.6571 -0.2206 -2.1399 35 1 3.9415 -1.2845 -2.0986 36 1 3.9142 0.3407 -1.3700 37 1 6.6843 -1.5126 2.6268 38 1 3.9144 0.3408 1.3672 39 1 3.9417 -1.2847 2.0982 40 1 1.3682 -2.5429 0.3915 41 1 -0.0152 -4.2717 1.9280 42 1 1.6699 -4.8278 1.7881 43 1 2.9321 -5.4765 3.7530 44 1 2.8473 -6.3305 6.0602 45 1 -1.1019 -4.1350 4.0939 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968107814.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:56 Heat of formation + Delta-G solvation = -87.298733 kcal Electronic energy + Delta-G solvation = -30134.100131 eV Core-core repulsion = 25787.743183 eV Total energy + Delta-G solvation = -4346.356947 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.48452 -48.56282 -39.95817 -38.89394 -37.40893 -34.16241 -32.87623 -32.51146 -31.05971 -30.84035 -29.37861 -27.63996 -26.92027 -24.10326 -23.33050 -22.62039 -21.89216 -21.12393 -20.29769 -18.70286 -17.97260 -17.21758 -17.04579 -16.98421 -16.58795 -16.26788 -15.37003 -15.03198 -14.97999 -14.54400 -14.50028 -14.32125 -14.03266 -13.98015 -13.81027 -13.49762 -13.36816 -13.12485 -12.87139 -12.66020 -12.15819 -11.93514 -11.88435 -11.78940 -11.59045 -11.40919 -11.31036 -11.08515 -10.96041 -10.76210 -10.55021 -10.27332 -9.96118 -9.73515 -9.53761 -9.40471 -9.09218 -8.63276 -8.49336 -8.37517 -6.67474 -5.80292 -3.23601 0.86076 0.96937 3.12584 3.23933 3.32617 3.38966 3.41670 3.73668 3.84618 4.26675 4.43838 4.45735 4.58470 4.94245 5.04093 5.13735 5.20643 5.21882 5.31774 5.32247 5.39784 5.50078 5.52294 5.67635 5.77726 5.84234 5.85248 5.90003 5.97633 5.99922 6.11421 6.26251 6.32200 6.33507 6.41458 6.51873 6.63532 6.70029 6.72199 6.85633 6.97741 7.35699 7.64601 7.77073 8.07772 8.43430 8.77390 9.18248 9.82473 10.38883 11.27525 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010979 B = 0.004032 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.805899 B = 6942.592938 C = 8878.768158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 H 0.076 0.924 4 C -0.128 4.128 5 C 0.142 3.858 6 N -0.587 5.587 7 C -0.255 4.255 8 H 0.063 0.937 9 C 0.007 3.993 10 N -0.897 5.897 11 Si 0.895 3.105 12 H -0.287 1.287 13 H -0.289 1.289 14 H -0.280 1.280 15 C 0.161 3.839 16 C 0.127 3.873 17 H 0.075 0.925 18 N -0.698 5.698 19 C 0.514 3.486 20 O -0.539 6.539 21 C -0.107 4.107 22 C -0.036 4.036 23 C -0.082 4.082 24 C -0.122 4.122 25 C 0.061 3.939 26 F -0.133 7.133 27 C 0.066 3.934 28 F -0.133 7.133 29 C -0.113 4.113 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.017 0.983 37 H 0.254 0.746 38 H 0.023 0.977 39 H 0.097 0.903 40 H 0.395 0.605 41 H 0.102 0.898 42 H 0.110 0.890 43 H 0.142 0.858 44 H 0.145 0.855 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.535 -5.685 -0.514 14.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.095 0.905 4 C -0.167 4.167 5 C 0.015 3.985 6 N -0.310 5.310 7 C -0.385 4.385 8 H 0.081 0.919 9 C -0.192 4.192 10 N -0.540 5.540 11 Si 0.725 3.275 12 H -0.214 1.214 13 H -0.215 1.215 14 H -0.205 1.205 15 C 0.034 3.966 16 C 0.021 3.979 17 H 0.093 0.907 18 N -0.348 5.348 19 C 0.299 3.701 20 O -0.416 6.416 21 C -0.146 4.146 22 C -0.037 4.037 23 C -0.100 4.100 24 C -0.141 4.141 25 C 0.041 3.959 26 F -0.112 7.112 27 C 0.046 3.954 28 F -0.111 7.111 29 C -0.132 4.132 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.035 0.965 37 H 0.064 0.936 38 H 0.041 0.959 39 H 0.115 0.885 40 H 0.230 0.770 41 H 0.120 0.880 42 H 0.128 0.872 43 H 0.160 0.840 44 H 0.163 0.837 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -13.255 -5.285 0.461 14.277 hybrid contribution 0.335 -0.980 0.152 1.046 sum -12.920 -6.264 0.613 14.372 Atomic orbital electron populations 1.21843 0.96024 1.01299 1.00932 1.21312 0.94559 0.99892 0.95560 0.90542 1.22073 0.99202 0.99390 0.96075 1.20933 0.90724 0.96523 0.90301 1.43976 1.48273 1.39590 0.99128 1.19059 1.09835 1.03011 1.06545 0.91920 1.25017 0.97107 0.97149 0.99925 1.70001 1.37111 1.28965 1.17944 0.86427 0.79882 0.84001 0.77231 1.21423 1.21517 1.20530 1.21186 0.86759 0.97716 0.90915 1.21772 0.98840 0.80535 0.96780 0.90726 1.45795 1.66911 1.14038 1.08081 1.20114 0.78247 0.87391 0.84360 1.90722 1.50296 1.69832 1.30792 1.20725 1.04377 0.95342 0.94204 1.19220 0.92671 0.96273 0.95512 1.21055 0.98486 0.96072 0.94402 1.21053 0.96595 1.01773 0.94677 1.17669 0.95058 1.02135 0.81081 1.91506 1.96900 1.86298 1.36467 1.17561 0.82623 1.03887 0.91377 1.91505 1.48243 1.94219 1.77141 1.20862 0.99928 1.00519 0.91880 0.93155 0.93202 0.93053 0.92689 0.92849 0.92865 0.96518 0.93569 0.95862 0.88511 0.77048 0.87997 0.87185 0.84024 0.83672 0.83943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.05 37.16 0.34 -1.37 16 2 C -0.09 -1.38 2.48 -90.58 -0.22 -1.60 16 3 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 4 C -0.13 -1.88 5.20 -26.61 -0.14 -2.01 16 5 C 0.14 2.68 6.52 -3.70 -0.02 2.66 16 6 N -0.59 -13.51 2.91 -172.31 -0.50 -14.01 16 7 C -0.25 -6.56 9.58 -15.06 -0.14 -6.70 16 8 H 0.06 1.58 7.89 -52.48 -0.41 1.17 16 9 C 0.01 0.20 4.92 -17.43 -0.09 0.11 16 10 N -0.90 -25.72 11.20 55.49 0.62 -25.10 16 11 Si 0.89 20.95 29.59 -169.99 -5.03 15.92 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 15 C 0.16 3.69 4.90 -3.72 -0.02 3.67 16 16 C 0.13 2.25 2.24 -67.81 -0.15 2.10 16 17 H 0.07 1.41 7.58 -51.92 -0.39 1.01 16 18 N -0.70 -11.05 4.25 -53.69 -0.23 -11.28 16 19 C 0.51 8.48 7.79 -10.98 -0.09 8.40 16 20 O -0.54 -11.23 15.70 5.55 0.09 -11.14 16 21 C -0.11 -1.27 5.83 -29.03 -0.17 -1.44 16 22 C -0.04 -0.47 4.37 -104.63 -0.46 -0.92 16 23 C -0.08 -1.07 9.69 -39.58 -0.38 -1.46 16 24 C -0.12 -1.53 10.03 -39.52 -0.40 -1.93 16 25 C 0.06 0.83 7.31 -39.36 -0.29 0.54 16 26 F -0.13 -1.88 17.18 2.25 0.04 -1.84 16 27 C 0.07 0.89 7.31 -39.36 -0.29 0.61 16 28 F -0.13 -1.86 17.18 2.25 0.04 -1.82 16 29 C -0.11 -1.41 9.68 -39.53 -0.38 -1.80 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.57 7.54 -51.93 -0.39 0.18 16 33 H 0.05 0.77 6.40 -51.93 -0.33 0.44 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.99 7.93 -51.93 -0.41 0.58 16 36 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.25 7.16 8.31 -40.82 -0.34 6.83 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.10 2.63 6.06 -51.93 -0.31 2.31 16 40 H 0.39 5.44 6.64 -40.82 -0.27 5.17 16 41 H 0.10 0.87 8.08 -51.93 -0.42 0.45 16 42 H 0.11 1.19 8.08 -51.93 -0.42 0.77 16 43 H 0.14 1.78 8.06 -52.49 -0.42 1.35 16 44 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 45 H 0.14 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 373.76 15.07 5.63 5.63 Total: -1.00 -31.24 373.76 -8.55 -39.79 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -6.31 Total: 4.98 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -2.90 Total: -1.14 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: -0.11 Total: -50.39 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.14 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.08 Total: -3.66 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.24 -8.55 -39.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968107814.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.511 kcal (2) G-P(sol) polarization free energy of solvation -31.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds