Wall clock time and date at job start Tue Mar 31 2020 22:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.44877 * 2 1 4 4 C 1.53040 * 109.45534 * 240.03598 * 2 1 3 5 5 C 1.53192 * 109.31226 * 178.61306 * 4 2 1 6 6 N 1.46938 * 108.77290 * 54.63712 * 5 4 2 7 7 C 1.36931 * 120.62947 * 126.41307 * 6 5 4 8 8 H 1.08003 * 120.00305 * 331.82787 * 7 6 5 9 9 C 1.38815 * 120.00023 * 151.82204 * 7 6 5 10 10 N 1.31622 * 119.99788 * 343.07022 * 9 7 6 11 11 Si 1.86796 * 120.00153 * 163.06416 * 9 7 6 12 12 H 1.48503 * 109.46644 * 90.00307 * 11 9 7 13 13 H 1.48501 * 109.47015 * 210.00206 * 11 9 7 14 14 H 1.48494 * 109.47130 * 330.00742 * 11 9 7 15 15 C 1.46921 * 118.73512 * 306.39014 * 6 5 4 16 16 C 1.53036 * 109.46242 * 119.96992 * 2 1 3 17 17 H 1.09007 * 109.49734 * 301.36658 * 16 2 1 18 18 N 1.46503 * 109.49854 * 61.43033 * 16 2 1 19 19 C 1.34772 * 119.99919 * 205.00291 * 18 16 2 20 20 O 1.21285 * 120.00448 * 0.02562 * 19 18 16 21 21 C 1.50706 * 119.99934 * 179.97438 * 19 18 16 22 22 C 1.50703 * 109.47039 * 179.97438 * 21 19 18 23 23 C 1.38250 * 119.96650 * 269.72641 * 22 21 19 24 24 C 1.38218 * 120.07207 * 179.76608 * 23 22 21 25 25 C 1.38419 * 119.99454 * 0.51523 * 24 23 22 26 26 F 1.35100 * 120.03309 * 179.72295 * 25 24 23 27 27 C 1.38649 * 119.93073 * 359.74005 * 25 24 23 28 28 F 1.35092 * 120.03347 * 180.02562 * 27 25 24 29 29 C 1.38212 * 119.95893 * 90.00486 * 22 21 19 30 30 H 1.09006 * 109.46505 * 300.03620 * 1 2 3 31 31 H 1.08997 * 109.47185 * 60.03028 * 1 2 3 32 32 H 1.08992 * 109.47574 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.50036 * 298.56298 * 4 2 1 34 34 H 1.09003 * 109.49966 * 58.66740 * 4 2 1 35 35 H 1.08999 * 109.58843 * 174.41874 * 5 4 2 36 36 H 1.09003 * 109.58933 * 294.70945 * 5 4 2 37 37 H 0.97004 * 119.99890 * 179.97438 * 10 9 7 38 38 H 1.09006 * 109.58632 * 293.82072 * 15 6 5 39 39 H 1.08999 * 109.58470 * 173.39771 * 15 6 5 40 40 H 0.96997 * 119.99746 * 24.99965 * 18 16 2 41 41 H 1.08996 * 109.47025 * 300.00179 * 21 19 18 42 42 H 1.08998 * 109.46674 * 60.00379 * 21 19 18 43 43 H 1.08002 * 119.96850 * 0.02808 * 23 22 21 44 44 H 1.08000 * 120.00625 * 180.25224 * 24 23 22 45 45 H 1.07997 * 120.00533 * 359.95443 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0397 -0.7207 -1.2501 5 6 3.5713 -0.6886 -1.2644 6 7 4.0678 -1.2490 -0.0001 7 6 4.9763 -2.2735 -0.0002 8 1 5.0043 -2.9704 -0.8249 9 6 5.8614 -2.4164 1.0595 10 7 6.0660 -1.4127 1.8860 11 14 6.7620 -4.0332 1.3127 12 1 8.0464 -4.0063 0.5678 13 1 7.0330 -4.2275 2.7598 14 1 5.9227 -5.1511 0.8117 15 6 3.5714 -0.6887 1.2641 16 6 2.0399 -0.7208 1.2500 17 1 1.6568 -0.2211 2.1398 18 7 1.5801 -2.1117 1.2341 19 6 1.4516 -2.7921 2.3904 20 8 1.7161 -2.2529 3.4441 21 6 0.9781 -4.2228 2.3741 22 6 0.9221 -4.7494 3.7850 23 6 2.0284 -5.3700 4.3349 24 6 1.9811 -5.8495 5.6303 25 6 0.8216 -5.7181 6.3749 26 9 0.7727 -6.1915 7.6393 27 6 -0.2896 -5.1005 5.8216 28 9 -1.4221 -4.9707 6.5466 29 6 -0.2371 -4.6166 4.5258 30 1 -0.3632 0.5144 0.8897 31 1 -0.3633 0.5133 -0.8902 32 1 -0.3634 -1.0276 0.0005 33 1 1.6977 -1.7556 -1.2384 34 1 1.6571 -0.2206 -2.1399 35 1 3.9415 -1.2845 -2.0986 36 1 3.9142 0.3407 -1.3700 37 1 6.6843 -1.5126 2.6268 38 1 3.9144 0.3408 1.3672 39 1 3.9417 -1.2847 2.0982 40 1 1.3682 -2.5429 0.3915 41 1 -0.0152 -4.2717 1.9280 42 1 1.6699 -4.8278 1.7881 43 1 2.9321 -5.4765 3.7530 44 1 2.8473 -6.3305 6.0602 45 1 -1.1019 -4.1350 4.0939 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968107814.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:55 Heat of formation + Delta-G solvation = -104.907090 kcal Electronic energy + Delta-G solvation = -30134.863686 eV Core-core repulsion = 25787.743183 eV Total energy + Delta-G solvation = -4347.120503 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.54945 -49.63298 -41.22223 -40.05530 -38.79266 -35.86137 -34.26661 -33.60152 -32.76879 -31.83707 -30.85589 -28.99236 -28.19416 -25.76864 -24.33359 -23.98196 -23.10893 -22.68197 -21.49606 -20.21301 -19.02603 -18.60521 -18.25077 -18.16730 -17.91857 -17.35011 -16.86551 -16.61269 -16.06011 -15.91138 -15.65383 -15.59337 -15.42544 -15.18125 -14.99377 -14.83064 -14.74274 -14.52128 -14.06492 -14.03820 -13.56496 -13.13580 -13.02737 -12.94726 -12.92400 -12.75732 -12.67088 -12.53121 -12.42123 -12.26307 -12.18849 -11.89186 -11.51208 -11.24808 -11.01734 -10.78967 -10.49578 -10.08871 -9.83430 -9.67408 -8.59734 -7.81552 -5.27114 -0.17272 -0.01307 1.45805 1.47083 1.56275 1.86063 2.17457 2.53395 2.66104 2.74477 3.24320 3.34465 3.45753 3.60559 3.73274 3.92074 3.98167 4.04482 4.09443 4.11757 4.18991 4.41853 4.58027 4.60613 4.70967 4.71946 4.76736 4.82707 4.85235 4.90700 4.98917 4.99762 4.99934 5.15236 5.21417 5.30127 5.31944 5.34541 5.51675 5.57566 5.65856 5.70532 5.76883 5.83211 6.43440 6.81876 7.18944 7.52361 7.92287 8.43929 9.23394 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010979 B = 0.004032 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.805899 B = 6942.592938 C = 8878.768158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.088 4.088 3 H 0.068 0.932 4 C -0.114 4.114 5 C 0.134 3.866 6 N -0.599 5.599 7 C -0.248 4.248 8 H 0.073 0.927 9 C -0.051 4.051 10 N -0.937 5.937 11 Si 0.953 3.047 12 H -0.290 1.290 13 H -0.303 1.303 14 H -0.256 1.256 15 C 0.172 3.828 16 C 0.140 3.860 17 H 0.059 0.941 18 N -0.689 5.689 19 C 0.507 3.493 20 O -0.590 6.590 21 C -0.096 4.096 22 C -0.044 4.044 23 C -0.093 4.093 24 C -0.123 4.123 25 C 0.046 3.954 26 F -0.140 7.140 27 C 0.052 3.948 28 F -0.138 7.138 29 C -0.109 4.109 30 H 0.046 0.954 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.058 0.942 36 H 0.006 0.994 37 H 0.243 0.757 38 H -0.013 1.013 39 H 0.050 0.950 40 H 0.409 0.591 41 H 0.146 0.854 42 H 0.126 0.874 43 H 0.145 0.855 44 H 0.163 0.837 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.867 -7.058 -3.058 17.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.107 4.107 3 H 0.086 0.914 4 C -0.153 4.153 5 C 0.009 3.991 6 N -0.322 5.322 7 C -0.379 4.379 8 H 0.091 0.909 9 C -0.246 4.246 10 N -0.584 5.584 11 Si 0.782 3.218 12 H -0.217 1.217 13 H -0.230 1.230 14 H -0.180 1.180 15 C 0.045 3.955 16 C 0.033 3.967 17 H 0.077 0.923 18 N -0.340 5.340 19 C 0.294 3.706 20 O -0.470 6.470 21 C -0.135 4.135 22 C -0.045 4.045 23 C -0.111 4.111 24 C -0.141 4.141 25 C 0.026 3.974 26 F -0.118 7.118 27 C 0.032 3.968 28 F -0.116 7.116 29 C -0.128 4.128 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.076 0.924 36 H 0.024 0.976 37 H 0.052 0.948 38 H 0.005 0.995 39 H 0.069 0.931 40 H 0.246 0.754 41 H 0.164 0.836 42 H 0.144 0.856 43 H 0.163 0.837 44 H 0.180 0.820 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -15.630 -6.683 -2.155 17.135 hybrid contribution 1.113 -0.475 0.901 1.509 sum -14.516 -7.158 -1.254 16.234 Atomic orbital electron populations 1.21751 0.92912 1.02499 1.01959 1.21260 0.96964 0.98846 0.93659 0.91405 1.21942 0.95305 1.00770 0.97258 1.21156 0.93979 0.95614 0.88346 1.44185 1.48124 1.39441 1.00491 1.19448 1.09057 1.03338 1.06022 0.90948 1.25745 0.98672 0.99847 1.00337 1.70197 1.38439 1.31065 1.18662 0.85489 0.78889 0.81334 0.76126 1.21680 1.22976 1.18018 1.20860 0.90402 0.94567 0.89675 1.21360 0.94839 0.82346 0.98179 0.92320 1.45682 1.66242 1.13211 1.08850 1.20973 0.77081 0.88991 0.83520 1.90710 1.52375 1.71340 1.32594 1.20765 1.07049 0.91648 0.94073 1.19420 0.92652 0.96139 0.96244 1.21256 0.98858 0.96336 0.94695 1.21251 0.96838 1.01482 0.94544 1.17886 0.95683 1.02764 0.81073 1.91484 1.96970 1.86466 1.36905 1.17779 0.82524 1.04486 0.92007 1.91487 1.48468 1.94324 1.77366 1.21099 1.00633 0.99759 0.91262 0.93478 0.90910 0.91738 0.91206 0.89447 0.92390 0.97593 0.94776 0.99493 0.93122 0.75374 0.83594 0.85587 0.83724 0.81958 0.81665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 9.05 71.98 0.65 -1.98 16 2 C -0.09 -2.37 2.48 -10.77 -0.03 -2.40 16 3 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 4 C -0.11 -2.91 5.20 30.67 0.16 -2.75 16 5 C 0.13 4.87 6.52 86.36 0.56 5.43 16 6 N -0.60 -27.60 2.91 -699.08 -2.03 -29.64 16 7 C -0.25 -12.71 9.58 84.04 0.81 -11.91 16 8 H 0.07 3.53 7.89 -2.91 -0.02 3.50 16 9 C -0.05 -2.78 4.92 84.86 0.42 -2.36 16 10 N -0.94 -56.30 11.20 21.65 0.24 -56.06 16 11 Si 0.95 43.49 29.59 68.60 2.03 45.52 16 12 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 13 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 14 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 15 C 0.17 8.18 4.90 86.36 0.42 8.61 16 16 C 0.14 4.92 2.24 45.07 0.10 5.02 16 17 H 0.06 2.27 7.58 -2.38 -0.02 2.25 16 18 N -0.69 -20.45 4.25 -442.16 -1.88 -22.33 16 19 C 0.51 16.00 7.79 87.66 0.68 16.68 16 20 O -0.59 -24.80 15.70 -3.04 -0.05 -24.85 16 21 C -0.10 -1.98 5.83 29.10 0.17 -1.81 16 22 C -0.04 -1.05 4.37 -19.87 -0.09 -1.13 16 23 C -0.09 -2.34 9.69 22.27 0.22 -2.13 16 24 C -0.12 -3.00 10.03 22.31 0.22 -2.78 16 25 C 0.05 1.24 7.31 22.41 0.16 1.41 16 26 F -0.14 -3.94 17.18 44.97 0.77 -3.17 16 27 C 0.05 1.38 7.31 22.41 0.16 1.54 16 28 F -0.14 -3.79 17.18 44.97 0.77 -3.01 16 29 C -0.11 -2.53 9.68 22.31 0.22 -2.31 16 30 H 0.05 0.97 8.14 -2.38 -0.02 0.96 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.06 1.12 7.54 -2.39 -0.02 1.10 16 33 H 0.07 1.62 6.40 -2.39 -0.02 1.61 16 34 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.06 2.03 7.93 -2.39 -0.02 2.01 16 36 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 37 H 0.24 14.50 8.31 -92.71 -0.77 13.73 16 38 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 39 H 0.05 2.89 6.06 -2.39 -0.01 2.88 16 40 H 0.41 9.73 6.64 -92.71 -0.62 9.12 16 41 H 0.15 1.73 8.08 -2.39 -0.02 1.71 16 42 H 0.13 2.26 8.08 -2.39 -0.02 2.24 16 43 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 44 H 0.16 3.26 8.06 -2.91 -0.02 3.23 16 45 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -72.48 373.76 5.10 -67.38 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.40 Total: 19.03 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 4.84 Total: 7.12 kcal Atomic # 7 Polarization: -104.36 SS G_CDS: -3.67 Total: -108.03 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.05 Total: -24.85 kcal Atomic # 9 Polarization: -7.73 SS G_CDS: 1.55 Total: -6.18 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -72.48 5.10 -67.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968107814.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.522 kcal (2) G-P(sol) polarization free energy of solvation -72.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds