Wall clock time and date at job start Tue Mar 31 2020 22:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.45791 * 2 1 4 4 C 1.53038 * 109.45732 * 240.04179 * 2 1 3 5 5 C 1.53200 * 109.31022 * 178.61262 * 4 2 1 6 6 N 1.46919 * 108.77601 * 54.63385 * 5 4 2 7 7 C 1.36936 * 120.63150 * 126.43340 * 6 5 4 8 8 H 1.07998 * 120.00179 * 207.66772 * 7 6 5 9 9 C 1.38817 * 120.00026 * 27.66390 * 7 6 5 10 10 N 1.31625 * 119.99612 * 17.36624 * 9 7 6 11 11 Si 1.86790 * 120.00328 * 197.36422 * 9 7 6 12 12 H 1.48504 * 109.47238 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47377 * 119.99908 * 11 9 7 14 14 H 1.48499 * 109.47511 * 240.00369 * 11 9 7 15 15 C 1.46931 * 118.76843 * 306.41353 * 6 5 4 16 16 C 1.53042 * 109.46174 * 119.97180 * 2 1 3 17 17 H 1.09005 * 109.49666 * 61.40384 * 16 2 1 18 18 N 1.46498 * 109.49856 * 301.34038 * 16 2 1 19 19 C 1.34774 * 120.00104 * 155.06455 * 18 16 2 20 20 O 1.21285 * 119.99759 * 359.97438 * 19 18 16 21 21 C 1.50701 * 120.00032 * 179.97438 * 19 18 16 22 22 C 1.50702 * 109.46788 * 180.02562 * 21 19 18 23 23 C 1.38260 * 119.96427 * 90.00082 * 22 21 19 24 24 C 1.38212 * 120.06606 * 179.71564 * 23 22 21 25 25 C 1.38409 * 120.00751 * 0.02562 * 24 23 22 26 26 F 1.35094 * 120.04029 * 180.02562 * 25 24 23 27 27 C 1.38650 * 119.92466 * 359.97438 * 25 24 23 28 28 F 1.35102 * 120.03541 * 179.97438 * 27 25 24 29 29 C 1.38211 * 119.96464 * 269.72136 * 22 21 19 30 30 H 1.09003 * 109.47000 * 300.02170 * 1 2 3 31 31 H 1.08990 * 109.47602 * 60.02917 * 1 2 3 32 32 H 1.09009 * 109.46735 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.49985 * 298.56348 * 4 2 1 34 34 H 1.08996 * 109.50022 * 58.66414 * 4 2 1 35 35 H 1.08994 * 109.58313 * 174.42578 * 5 4 2 36 36 H 1.08999 * 109.58603 * 294.84665 * 5 4 2 37 37 H 0.96999 * 119.99774 * 180.02562 * 10 9 7 38 38 H 1.09000 * 109.56078 * 293.78750 * 15 6 5 39 39 H 1.09001 * 109.61935 * 173.35686 * 15 6 5 40 40 H 0.96998 * 120.00183 * 335.06134 * 18 16 2 41 41 H 1.08996 * 109.47110 * 59.99853 * 21 19 18 42 42 H 1.09001 * 109.46950 * 299.99980 * 21 19 18 43 43 H 1.07998 * 119.96420 * 359.74107 * 23 22 21 44 44 H 1.08005 * 119.99422 * 179.97438 * 24 23 22 45 45 H 1.08005 * 119.99631 * 0.26103 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7206 -1.2502 5 6 3.5714 -0.6884 -1.2644 6 7 4.0679 -1.2487 -0.0003 7 6 4.9768 -2.2729 -0.0004 8 1 5.0102 -2.9654 0.8277 9 6 5.8553 -2.4213 -1.0650 10 7 6.0607 -1.4191 -1.8931 11 14 6.7457 -4.0430 -1.3221 12 1 6.3436 -5.0021 -0.2621 13 1 6.3890 -4.5981 -2.6525 14 1 8.2122 -3.8184 -1.2566 15 6 3.5715 -0.6894 1.2645 16 6 2.0399 -0.7209 1.2500 17 1 1.6974 -1.7556 1.2384 18 7 1.5256 -0.0490 2.4459 19 6 1.3984 -0.7323 3.6006 20 8 1.7093 -1.9036 3.6495 21 6 0.8699 -0.0410 4.8310 22 6 0.8272 -1.0186 5.9771 23 6 1.9237 -1.1571 6.8078 24 6 1.8847 -2.0488 7.8631 25 6 0.7474 -2.8047 8.0890 26 9 0.7084 -3.6761 9.1206 27 6 -0.3521 -2.6658 7.2559 28 9 -1.4632 -3.4029 7.4740 29 6 -0.3101 -1.7716 6.2002 30 1 -0.3633 0.5142 0.8898 31 1 -0.3634 0.5133 -0.8901 32 1 -0.3633 -1.0278 0.0005 33 1 1.6978 -1.7554 -1.2386 34 1 1.6572 -0.2205 -2.1398 35 1 3.9416 -1.2841 -2.0986 36 1 3.9143 0.3412 -1.3674 37 1 6.6742 -1.5228 -2.6372 38 1 3.9148 0.3399 1.3680 39 1 3.9413 -1.2858 2.0986 40 1 1.2767 0.8877 2.4068 41 1 -0.1348 0.3330 4.6343 42 1 1.5237 0.7921 5.0887 43 1 2.8114 -0.5676 6.6322 44 1 2.7420 -2.1564 8.5111 45 1 -1.1661 -1.6623 5.5506 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968107815.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:58 Heat of formation + Delta-G solvation = -108.951684 kcal Electronic energy + Delta-G solvation = -29186.633749 eV Core-core repulsion = 24839.337859 eV Total energy + Delta-G solvation = -4347.295890 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.53315 -49.62015 -41.22191 -39.99508 -38.90803 -36.13497 -34.44076 -33.59406 -33.00983 -31.80991 -30.67419 -29.08653 -28.10254 -25.85643 -24.32623 -24.08604 -22.93224 -22.63472 -21.36857 -20.80148 -19.00030 -18.72846 -18.22975 -18.06359 -17.91503 -17.32813 -17.13756 -16.63628 -16.14734 -16.05037 -15.61863 -15.55478 -15.40276 -15.25943 -14.97412 -14.94233 -14.85796 -14.42359 -14.14351 -14.05221 -13.55417 -13.20556 -13.14482 -13.01582 -12.91115 -12.75718 -12.74535 -12.59167 -12.28112 -12.23732 -11.99325 -11.94782 -11.63400 -11.39191 -11.21335 -10.81476 -10.59602 -10.06149 -10.01179 -9.65338 -8.68684 -7.91147 -5.35859 -0.14788 0.01914 1.42063 1.44476 1.55418 1.77633 2.10746 2.46026 2.58878 2.78595 3.22932 3.27631 3.47949 3.63063 3.72381 3.80547 4.00342 4.04662 4.09382 4.12816 4.17977 4.43606 4.49795 4.59065 4.63397 4.70649 4.76365 4.77860 4.86745 4.91669 4.96386 5.00232 5.03497 5.06176 5.15024 5.23932 5.28809 5.35173 5.49001 5.49813 5.63223 5.64250 5.74085 5.78865 6.36600 6.72752 7.12831 7.44454 7.83594 8.32210 9.14334 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012951 B = 0.002769 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.480962 B =10111.274857 C =11467.445407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.082 4.082 3 H 0.082 0.918 4 C -0.125 4.125 5 C 0.172 3.828 6 N -0.608 5.608 7 C -0.265 4.265 8 H 0.052 0.948 9 C -0.043 4.043 10 N -0.928 5.928 11 Si 0.962 3.038 12 H -0.275 1.275 13 H -0.285 1.285 14 H -0.287 1.287 15 C 0.144 3.856 16 C 0.151 3.849 17 H 0.051 0.949 18 N -0.705 5.705 19 C 0.507 3.493 20 O -0.585 6.585 21 C -0.092 4.092 22 C -0.049 4.049 23 C -0.086 4.086 24 C -0.123 4.123 25 C 0.042 3.958 26 F -0.143 7.143 27 C 0.044 3.956 28 F -0.142 7.142 29 C -0.114 4.114 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.039 0.961 33 H 0.042 0.958 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.006 0.994 37 H 0.252 0.748 38 H 0.023 0.977 39 H 0.030 0.970 40 H 0.418 0.582 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.164 0.836 44 H 0.166 0.834 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.412 9.676 15.121 23.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.101 4.101 3 H 0.101 0.899 4 C -0.164 4.164 5 C 0.047 3.953 6 N -0.332 5.332 7 C -0.395 4.395 8 H 0.070 0.930 9 C -0.239 4.239 10 N -0.574 5.574 11 Si 0.790 3.210 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.214 1.214 15 C 0.018 3.982 16 C 0.044 3.956 17 H 0.069 0.931 18 N -0.358 5.358 19 C 0.294 3.706 20 O -0.465 6.465 21 C -0.131 4.131 22 C -0.050 4.050 23 C -0.104 4.104 24 C -0.142 4.142 25 C 0.022 3.978 26 F -0.121 7.121 27 C 0.024 3.976 28 F -0.121 7.121 29 C -0.133 4.133 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.024 0.976 37 H 0.061 0.939 38 H 0.041 0.959 39 H 0.048 0.952 40 H 0.255 0.745 41 H 0.162 0.838 42 H 0.163 0.837 43 H 0.181 0.819 44 H 0.184 0.816 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -15.137 8.790 15.079 23.103 hybrid contribution 0.661 -1.315 -0.124 1.477 sum -14.476 7.475 14.954 22.115 Atomic orbital electron populations 1.21772 0.92863 1.01524 1.03029 1.21223 0.96960 0.99367 0.92589 0.89920 1.22091 0.96658 0.99705 0.97969 1.20701 0.90700 0.95378 0.88532 1.44228 1.48138 1.39785 1.01040 1.19405 1.10368 1.03726 1.06047 0.93045 1.25671 0.98200 1.00320 0.99717 1.70167 1.38489 1.30427 1.18312 0.85302 0.77920 0.80203 0.77609 1.20033 1.21113 1.21383 1.21245 0.93137 0.95767 0.88090 1.21159 0.93454 0.96165 0.84817 0.93087 1.45853 1.65530 1.15211 1.09172 1.21224 0.77293 0.86769 0.85275 1.90780 1.51407 1.18947 1.85346 1.20794 1.07110 0.97522 0.87632 1.19495 0.92711 0.96857 0.95905 1.21356 0.98859 0.97410 0.92738 1.21336 0.96754 0.95886 1.00197 1.18015 0.96298 0.94814 0.88663 1.91482 1.96942 1.67479 1.56224 1.17910 0.83464 0.97015 0.99209 1.91485 1.50482 1.75582 1.94572 1.21150 1.01135 0.95075 0.95948 0.90544 0.91235 0.94174 0.93909 0.90116 0.92973 0.97628 0.93893 0.95871 0.95158 0.74451 0.83793 0.83650 0.81892 0.81610 0.82239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 9.02 71.98 0.65 -2.04 16 2 C -0.08 -2.26 2.27 -10.77 -0.02 -2.28 16 3 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 4 C -0.12 -4.37 5.36 30.67 0.16 -4.21 16 5 C 0.17 8.10 5.31 86.37 0.46 8.56 16 6 N -0.61 -31.13 3.00 -699.09 -2.09 -33.22 16 7 C -0.27 -15.30 9.58 84.03 0.81 -14.49 16 8 H 0.05 3.05 7.89 -2.91 -0.02 3.02 16 9 C -0.04 -2.47 4.91 84.86 0.42 -2.05 16 10 N -0.93 -54.82 11.19 21.65 0.24 -54.57 16 11 Si 0.96 46.22 29.59 68.60 2.03 48.25 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 13 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 14 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 15 C 0.14 6.09 6.09 86.36 0.53 6.62 16 16 C 0.15 4.87 2.06 45.07 0.09 4.97 16 17 H 0.05 2.04 7.58 -2.38 -0.02 2.03 16 18 N -0.71 -15.16 4.37 -442.15 -1.93 -17.09 16 19 C 0.51 11.72 7.79 87.66 0.68 12.41 16 20 O -0.59 -20.89 15.70 -3.04 -0.05 -20.94 16 21 C -0.09 -1.03 5.83 29.10 0.17 -0.86 16 22 C -0.05 -0.82 4.37 -19.86 -0.09 -0.90 16 23 C -0.09 -1.40 9.70 22.27 0.22 -1.18 16 24 C -0.12 -2.23 10.02 22.30 0.22 -2.01 16 25 C 0.04 0.97 7.31 22.41 0.16 1.13 16 26 F -0.14 -3.61 17.18 44.97 0.77 -2.84 16 27 C 0.04 1.03 7.31 22.41 0.16 1.19 16 28 F -0.14 -3.68 17.18 44.97 0.77 -2.91 16 29 C -0.11 -2.18 9.68 22.31 0.22 -1.96 16 30 H 0.08 1.11 7.36 -2.39 -0.02 1.10 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.08 2.40 8.14 -2.39 -0.02 2.39 16 35 H 0.05 2.82 6.04 -2.39 -0.01 2.81 16 36 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 37 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 38 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.03 1.41 7.93 -2.39 -0.02 1.39 16 40 H 0.42 5.30 8.31 -92.71 -0.77 4.53 16 41 H 0.14 0.62 8.08 -2.39 -0.02 0.60 16 42 H 0.15 0.69 8.08 -2.39 -0.02 0.67 16 43 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 44 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 45 H 0.16 2.38 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -77.87 376.88 4.82 -73.04 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: 0.24 Total: 7.39 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 4.84 Total: 2.89 kcal Atomic # 7 Polarization: -101.10 SS G_CDS: -3.78 Total: -104.89 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.05 Total: -20.94 kcal Atomic # 9 Polarization: -7.29 SS G_CDS: 1.55 Total: -5.75 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -77.87 4.82 -73.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968107815.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.910 kcal (2) G-P(sol) polarization free energy of solvation -77.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds