Wall clock time and date at job start Tue Mar 31 2020 22:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46160 * 2 1 4 4 C 1.53040 * 109.44798 * 119.96517 * 2 1 3 5 5 C 1.53197 * 109.31032 * 181.38140 * 4 2 1 6 6 N 1.46926 * 108.77305 * 305.36232 * 5 4 2 7 7 C 1.36942 * 120.63063 * 233.88748 * 6 5 4 8 8 H 1.07996 * 119.99801 * 152.43716 * 7 6 5 9 9 C 1.38807 * 119.99880 * 332.42519 * 7 6 5 10 10 N 1.31624 * 120.00086 * 159.47314 * 9 7 6 11 11 Si 1.86803 * 120.00386 * 339.47592 * 9 7 6 12 12 H 1.48500 * 109.47214 * 93.00133 * 11 9 7 13 13 H 1.48499 * 109.47277 * 213.00605 * 11 9 7 14 14 H 1.48503 * 109.46657 * 333.00776 * 11 9 7 15 15 C 1.46925 * 118.73787 * 53.61355 * 6 5 4 16 16 C 1.53039 * 109.46127 * 240.02788 * 2 1 3 17 17 H 1.09001 * 109.49426 * 58.67199 * 16 2 1 18 18 N 1.46501 * 109.52238 * 298.59417 * 16 2 1 19 19 C 1.34777 * 119.99883 * 155.14174 * 18 16 2 20 20 O 1.21279 * 120.00164 * 0.02562 * 19 18 16 21 21 C 1.50704 * 119.99915 * 180.02562 * 19 18 16 22 22 C 1.50701 * 109.47038 * 180.02562 * 21 19 18 23 23 C 1.38251 * 119.96184 * 269.72357 * 22 21 19 24 24 C 1.38217 * 120.07069 * 179.76903 * 23 22 21 25 25 C 1.38414 * 119.99764 * 0.50829 * 24 23 22 26 26 F 1.35099 * 120.03710 * 179.72994 * 25 24 23 27 27 C 1.38651 * 119.92937 * 359.74264 * 25 24 23 28 28 F 1.35098 * 120.03718 * 180.02562 * 27 25 24 29 29 C 1.38214 * 119.96571 * 90.00008 * 22 21 19 30 30 H 1.09002 * 109.47513 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47437 * 299.97130 * 1 2 3 32 32 H 1.09004 * 109.47320 * 59.96994 * 1 2 3 33 33 H 1.09000 * 109.49650 * 301.32837 * 4 2 1 34 34 H 1.08999 * 109.50038 * 61.39515 * 4 2 1 35 35 H 1.08999 * 109.58801 * 185.58117 * 5 4 2 36 36 H 1.08994 * 109.59112 * 65.15072 * 5 4 2 37 37 H 0.96994 * 120.00377 * 180.02562 * 10 9 7 38 38 H 1.08993 * 109.58928 * 66.17838 * 15 6 5 39 39 H 1.08998 * 109.58618 * 186.46297 * 15 6 5 40 40 H 0.97004 * 120.00322 * 335.14951 * 18 16 2 41 41 H 1.08997 * 109.46796 * 300.00093 * 21 19 18 42 42 H 1.08995 * 109.47317 * 60.00068 * 21 19 18 43 43 H 1.08001 * 119.97181 * 0.02562 * 23 22 21 44 44 H 1.08004 * 120.00527 * 180.25670 * 24 23 22 45 45 H 1.07998 * 120.00053 * 359.95303 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0395 -0.7208 1.2502 5 6 3.5711 -0.6888 1.2645 6 7 4.0676 -1.2493 0.0004 7 6 4.9714 -2.2781 0.0005 8 1 5.0042 -2.9681 -0.8297 9 6 5.8454 -2.4339 1.0675 10 7 6.4187 -3.5988 1.2840 11 14 6.2080 -0.9904 2.1965 12 1 5.2807 -1.0236 3.3558 13 1 7.6090 -1.0803 2.6804 14 1 6.0224 0.2801 1.4504 15 6 3.5713 -0.6889 -1.2640 16 6 2.0398 -0.7209 -1.2500 17 1 1.6573 -0.2208 -2.1398 18 7 1.5799 -2.1117 -1.2349 19 6 1.4543 -2.7925 -2.3913 20 8 1.7226 -2.2540 -3.4443 21 6 0.9806 -4.2231 -2.3758 22 6 0.9284 -4.7502 -3.7867 23 6 -0.2309 -4.6225 -4.5290 24 6 -0.2798 -5.1009 -5.8248 25 6 0.8293 -5.7180 -6.3770 26 9 0.7807 -6.1907 -7.6416 27 6 1.9903 -5.8507 -5.6307 28 9 3.0743 -6.4521 -6.1677 29 6 2.0377 -5.3659 -4.3351 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5134 0.8903 32 1 -0.3634 0.5143 -0.8897 33 1 1.6569 -0.2206 2.1398 34 1 1.6968 -1.7554 1.2388 35 1 3.9412 -1.2848 2.0987 36 1 3.9142 0.3406 1.3676 37 1 7.0292 -3.7078 2.0298 38 1 3.9145 0.3404 -1.3671 39 1 3.9436 -1.2835 -2.0982 40 1 1.3655 -2.5426 -0.3927 41 1 1.6707 -4.8280 -1.7877 42 1 -0.0139 -4.2718 -1.9324 43 1 -1.0981 -4.1448 -4.0974 44 1 -1.1847 -4.9968 -6.4052 45 1 2.9415 -5.4683 -3.7529 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968107819.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:04 Heat of formation + Delta-G solvation = -82.095720 kcal Electronic energy + Delta-G solvation = -29828.164063 eV Core-core repulsion = 25482.032735 eV Total energy + Delta-G solvation = -4346.131328 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.50185 -48.57594 -40.15225 -39.06034 -37.66435 -34.42506 -32.96538 -32.57979 -31.45588 -30.91408 -29.83489 -27.90807 -27.10951 -23.96217 -23.39292 -22.96018 -22.18450 -21.35146 -20.45982 -18.92594 -18.02491 -17.27900 -17.20525 -17.01714 -16.61556 -16.29533 -15.56944 -15.32516 -15.06603 -14.99109 -14.58746 -14.40247 -14.16174 -14.04232 -13.80271 -13.69256 -13.60447 -13.43847 -13.03086 -12.61207 -12.38154 -12.15092 -12.00750 -11.97304 -11.89330 -11.60664 -11.50181 -11.35671 -11.27889 -10.72998 -10.65441 -10.27736 -9.95693 -9.76327 -9.63358 -9.46541 -9.14943 -8.88407 -8.70350 -8.48471 -6.98686 -5.98833 -3.34533 0.78895 0.91225 2.92381 3.14015 3.26861 3.45675 3.47791 3.63966 3.71543 4.24569 4.38511 4.45863 4.48827 4.84308 4.90651 4.92038 4.99117 5.07100 5.12178 5.13970 5.23937 5.38386 5.41440 5.61653 5.67931 5.69877 5.73404 5.78590 5.82310 5.86696 5.93678 6.01941 6.05564 6.17851 6.23768 6.27942 6.33998 6.48768 6.57035 6.63915 6.65091 6.74117 6.94813 7.84884 7.93056 8.28707 8.54618 8.90556 9.68496 10.05477 11.17131 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013902 B = 0.003271 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.588445 B = 8557.002767 C =10049.713422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 H 0.078 0.922 4 C -0.130 4.130 5 C 0.123 3.877 6 N -0.601 5.601 7 C -0.255 4.255 8 H 0.083 0.917 9 C 0.024 3.976 10 N -0.908 5.908 11 Si 0.883 3.117 12 H -0.290 1.290 13 H -0.305 1.305 14 H -0.271 1.271 15 C 0.137 3.863 16 C 0.135 3.865 17 H 0.081 0.919 18 N -0.700 5.700 19 C 0.517 3.483 20 O -0.544 6.544 21 C -0.107 4.107 22 C -0.037 4.037 23 C -0.088 4.088 24 C -0.126 4.126 25 C 0.060 3.940 26 F -0.133 7.133 27 C 0.071 3.929 28 F -0.129 7.129 29 C -0.108 4.108 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.025 0.975 37 H 0.262 0.738 38 H 0.030 0.970 39 H 0.068 0.932 40 H 0.400 0.600 41 H 0.112 0.888 42 H 0.105 0.895 43 H 0.138 0.862 44 H 0.144 0.856 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.426 -0.125 -6.296 18.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 H 0.097 0.903 4 C -0.169 4.169 5 C -0.003 4.003 6 N -0.325 5.325 7 C -0.383 4.383 8 H 0.101 0.899 9 C -0.175 4.175 10 N -0.551 5.551 11 Si 0.713 3.287 12 H -0.218 1.218 13 H -0.233 1.233 14 H -0.196 1.196 15 C 0.010 3.990 16 C 0.029 3.971 17 H 0.099 0.901 18 N -0.351 5.351 19 C 0.302 3.698 20 O -0.422 6.422 21 C -0.147 4.147 22 C -0.038 4.038 23 C -0.107 4.107 24 C -0.145 4.145 25 C 0.040 3.960 26 F -0.111 7.111 27 C 0.051 3.949 28 F -0.108 7.108 29 C -0.127 4.127 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.043 0.957 37 H 0.072 0.928 38 H 0.048 0.952 39 H 0.087 0.913 40 H 0.236 0.764 41 H 0.130 0.870 42 H 0.123 0.877 43 H 0.155 0.845 44 H 0.162 0.838 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -17.040 0.125 -7.036 18.436 hybrid contribution 0.566 0.367 0.867 1.099 sum -16.474 0.492 -6.168 17.598 Atomic orbital electron populations 1.21829 0.95513 1.01570 1.01158 1.21317 0.95066 0.99813 0.95172 0.90342 1.22086 0.98602 0.99997 0.96231 1.21370 0.91559 0.97046 0.90315 1.44305 1.49019 1.40096 0.99089 1.18863 1.09901 1.02326 1.07224 0.89913 1.25271 0.97372 0.96580 0.98273 1.69825 1.32716 1.21919 1.30689 0.86965 0.76288 0.84927 0.80486 1.21772 1.23288 1.19644 1.21329 0.90715 0.97124 0.89865 1.21496 0.96772 0.81244 0.97566 0.90057 1.45850 1.66904 1.13780 1.08592 1.20203 0.77924 0.87542 0.84104 1.90705 1.50590 1.69981 1.30874 1.20720 1.04686 0.94899 0.94385 1.19203 0.92806 0.96216 0.95557 1.20904 0.98241 0.98446 0.93062 1.20982 0.97506 0.99522 0.96442 1.17681 0.94926 1.02691 0.80702 1.91510 1.96869 1.86412 1.36356 1.17620 0.83444 1.00656 0.93224 1.91533 1.52266 1.80967 1.85997 1.21041 1.00258 0.98302 0.93124 0.92831 0.92926 0.93029 0.92420 0.92012 0.90880 0.95704 0.92803 0.95237 0.91319 0.76441 0.86972 0.87679 0.84454 0.83826 0.83354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.05 37.16 0.34 -1.17 16 2 C -0.09 -1.25 2.48 -90.58 -0.22 -1.47 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.13 -1.93 5.20 -26.61 -0.14 -2.07 16 5 C 0.12 2.43 4.20 -3.71 -0.02 2.42 16 6 N -0.60 -13.23 2.68 -172.33 -0.46 -13.69 16 7 C -0.25 -6.77 10.03 -15.06 -0.15 -6.92 16 8 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 9 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 10 N -0.91 -26.98 13.97 55.49 0.78 -26.21 16 11 Si 0.88 21.71 24.35 -169.99 -4.14 17.57 16 12 H -0.29 -6.81 6.63 56.52 0.37 -6.44 16 13 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 14 H -0.27 -6.60 6.63 56.52 0.37 -6.23 16 15 C 0.14 2.62 6.12 -3.71 -0.02 2.60 16 16 C 0.14 2.06 2.24 -67.81 -0.15 1.90 16 17 H 0.08 1.25 7.58 -51.93 -0.39 0.85 16 18 N -0.70 -9.85 4.26 -53.69 -0.23 -10.08 16 19 C 0.52 7.47 7.79 -10.98 -0.09 7.38 16 20 O -0.54 -9.81 15.70 5.56 0.09 -9.72 16 21 C -0.11 -1.14 5.83 -29.03 -0.17 -1.31 16 22 C -0.04 -0.43 4.37 -104.63 -0.46 -0.89 16 23 C -0.09 -0.87 9.70 -39.58 -0.38 -1.26 16 24 C -0.13 -1.27 10.02 -39.52 -0.40 -1.67 16 25 C 0.06 0.75 7.31 -39.36 -0.29 0.47 16 26 F -0.13 -1.74 17.18 2.25 0.04 -1.70 16 27 C 0.07 0.97 7.31 -39.36 -0.29 0.68 16 28 F -0.13 -1.92 17.18 2.25 0.04 -1.88 16 29 C -0.11 -1.41 9.68 -39.53 -0.38 -1.79 16 30 H 0.05 0.53 7.54 -51.93 -0.39 0.14 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.90 6.41 -51.93 -0.33 0.57 16 35 H 0.07 1.61 4.49 -51.93 -0.23 1.38 16 36 H 0.03 0.50 7.09 -51.93 -0.37 0.13 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.07 1.47 7.93 -51.93 -0.41 1.05 16 40 H 0.40 5.16 6.64 -40.82 -0.27 4.89 16 41 H 0.11 1.17 8.08 -51.93 -0.42 0.75 16 42 H 0.10 0.77 8.08 -51.93 -0.42 0.35 16 43 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 44 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 45 H 0.15 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 367.33 15.07 5.54 5.54 Total: -1.00 -32.04 367.33 -7.50 -39.54 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -6.24 Total: 3.15 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -2.91 Total: -2.52 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: 0.08 Total: -49.98 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.08 Total: -3.58 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.14 Total: 17.57 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.04 -7.50 -39.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968107819.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.551 kcal (2) G-P(sol) polarization free energy of solvation -32.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds