Wall clock time and date at job start Tue Mar 31 2020 22:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46160 * 2 1 4 4 C 1.53040 * 109.44798 * 119.96517 * 2 1 3 5 5 C 1.53197 * 109.31032 * 181.38140 * 4 2 1 6 6 N 1.46926 * 108.77305 * 305.36232 * 5 4 2 7 7 C 1.36942 * 120.63063 * 233.88748 * 6 5 4 8 8 H 1.07996 * 119.99801 * 152.43716 * 7 6 5 9 9 C 1.38807 * 119.99880 * 332.42519 * 7 6 5 10 10 N 1.31624 * 120.00086 * 159.47314 * 9 7 6 11 11 Si 1.86803 * 120.00386 * 339.47592 * 9 7 6 12 12 H 1.48500 * 109.47214 * 93.00133 * 11 9 7 13 13 H 1.48499 * 109.47277 * 213.00605 * 11 9 7 14 14 H 1.48503 * 109.46657 * 333.00776 * 11 9 7 15 15 C 1.46925 * 118.73787 * 53.61355 * 6 5 4 16 16 C 1.53039 * 109.46127 * 240.02788 * 2 1 3 17 17 H 1.09001 * 109.49426 * 58.67199 * 16 2 1 18 18 N 1.46501 * 109.52238 * 298.59417 * 16 2 1 19 19 C 1.34777 * 119.99883 * 155.14174 * 18 16 2 20 20 O 1.21279 * 120.00164 * 0.02562 * 19 18 16 21 21 C 1.50704 * 119.99915 * 180.02562 * 19 18 16 22 22 C 1.50701 * 109.47038 * 180.02562 * 21 19 18 23 23 C 1.38251 * 119.96184 * 269.72357 * 22 21 19 24 24 C 1.38217 * 120.07069 * 179.76903 * 23 22 21 25 25 C 1.38414 * 119.99764 * 0.50829 * 24 23 22 26 26 F 1.35099 * 120.03710 * 179.72994 * 25 24 23 27 27 C 1.38651 * 119.92937 * 359.74264 * 25 24 23 28 28 F 1.35098 * 120.03718 * 180.02562 * 27 25 24 29 29 C 1.38214 * 119.96571 * 90.00008 * 22 21 19 30 30 H 1.09002 * 109.47513 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47437 * 299.97130 * 1 2 3 32 32 H 1.09004 * 109.47320 * 59.96994 * 1 2 3 33 33 H 1.09000 * 109.49650 * 301.32837 * 4 2 1 34 34 H 1.08999 * 109.50038 * 61.39515 * 4 2 1 35 35 H 1.08999 * 109.58801 * 185.58117 * 5 4 2 36 36 H 1.08994 * 109.59112 * 65.15072 * 5 4 2 37 37 H 0.96994 * 120.00377 * 180.02562 * 10 9 7 38 38 H 1.08993 * 109.58928 * 66.17838 * 15 6 5 39 39 H 1.08998 * 109.58618 * 186.46297 * 15 6 5 40 40 H 0.97004 * 120.00322 * 335.14951 * 18 16 2 41 41 H 1.08997 * 109.46796 * 300.00093 * 21 19 18 42 42 H 1.08995 * 109.47317 * 60.00068 * 21 19 18 43 43 H 1.08001 * 119.97181 * 0.02562 * 23 22 21 44 44 H 1.08004 * 120.00527 * 180.25670 * 24 23 22 45 45 H 1.07998 * 120.00053 * 359.95303 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0395 -0.7208 1.2502 5 6 3.5711 -0.6888 1.2645 6 7 4.0676 -1.2493 0.0004 7 6 4.9714 -2.2781 0.0005 8 1 5.0042 -2.9681 -0.8297 9 6 5.8454 -2.4339 1.0675 10 7 6.4187 -3.5988 1.2840 11 14 6.2080 -0.9904 2.1965 12 1 5.2807 -1.0236 3.3558 13 1 7.6090 -1.0803 2.6804 14 1 6.0224 0.2801 1.4504 15 6 3.5713 -0.6889 -1.2640 16 6 2.0398 -0.7209 -1.2500 17 1 1.6573 -0.2208 -2.1398 18 7 1.5799 -2.1117 -1.2349 19 6 1.4543 -2.7925 -2.3913 20 8 1.7226 -2.2540 -3.4443 21 6 0.9806 -4.2231 -2.3758 22 6 0.9284 -4.7502 -3.7867 23 6 -0.2309 -4.6225 -4.5290 24 6 -0.2798 -5.1009 -5.8248 25 6 0.8293 -5.7180 -6.3770 26 9 0.7807 -6.1907 -7.6416 27 6 1.9903 -5.8507 -5.6307 28 9 3.0743 -6.4521 -6.1677 29 6 2.0377 -5.3659 -4.3351 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5134 0.8903 32 1 -0.3634 0.5143 -0.8897 33 1 1.6569 -0.2206 2.1398 34 1 1.6968 -1.7554 1.2388 35 1 3.9412 -1.2848 2.0987 36 1 3.9142 0.3406 1.3676 37 1 7.0292 -3.7078 2.0298 38 1 3.9145 0.3404 -1.3671 39 1 3.9436 -1.2835 -2.0982 40 1 1.3655 -2.5426 -0.3927 41 1 1.6707 -4.8280 -1.7877 42 1 -0.0139 -4.2718 -1.9324 43 1 -1.0981 -4.1448 -4.0974 44 1 -1.1847 -4.9968 -6.4052 45 1 2.9415 -5.4683 -3.7529 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968107819.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:04 Heat of formation + Delta-G solvation = -101.846832 kcal Electronic energy + Delta-G solvation = -29829.020535 eV Core-core repulsion = 25482.032735 eV Total energy + Delta-G solvation = -4346.987800 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.54014 -49.62570 -41.30276 -40.11797 -38.92359 -36.03225 -34.20250 -33.57142 -33.34805 -31.82997 -31.16689 -29.18651 -28.25545 -25.56362 -24.39281 -24.22712 -23.29531 -22.82465 -21.52627 -20.31402 -19.00942 -18.71380 -18.24211 -18.14244 -17.93963 -17.34713 -17.17800 -16.81155 -16.22823 -16.05894 -15.67308 -15.55043 -15.29519 -15.25787 -15.14916 -15.01041 -14.88316 -14.64234 -14.20056 -14.07669 -13.79819 -13.57666 -13.12022 -13.01274 -12.94330 -12.89656 -12.67391 -12.60376 -12.32248 -12.25566 -12.18191 -11.80801 -11.54400 -11.33058 -11.12722 -10.82433 -10.69760 -10.07581 -9.93888 -9.65571 -8.83551 -8.14301 -5.45234 -0.14630 0.00792 1.29424 1.43485 1.51251 1.78778 2.18310 2.42363 2.61918 2.77442 3.10415 3.27558 3.33992 3.47599 3.62119 3.80977 3.95151 3.99756 4.07155 4.09577 4.12361 4.37182 4.42512 4.56154 4.59160 4.60975 4.74397 4.76792 4.78783 4.85671 4.89862 4.93286 5.00874 5.02177 5.04007 5.07003 5.19705 5.25937 5.35576 5.44054 5.53344 5.72608 5.73949 5.89150 6.13528 6.73296 6.94776 7.42058 7.65207 8.04481 9.05693 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013902 B = 0.003271 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.588445 B = 8557.002767 C =10049.713422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 H 0.084 0.916 4 C -0.121 4.121 5 C 0.115 3.885 6 N -0.610 5.610 7 C -0.236 4.236 8 H 0.042 0.958 9 C -0.033 4.033 10 N -0.957 5.957 11 Si 0.947 3.053 12 H -0.268 1.268 13 H -0.319 1.319 14 H -0.266 1.266 15 C 0.135 3.865 16 C 0.144 3.856 17 H 0.084 0.916 18 N -0.696 5.696 19 C 0.513 3.487 20 O -0.584 6.584 21 C -0.100 4.100 22 C -0.044 4.044 23 C -0.077 4.077 24 C -0.114 4.114 25 C 0.046 3.954 26 F -0.140 7.140 27 C 0.042 3.958 28 F -0.146 7.146 29 C -0.127 4.127 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.050 0.950 36 H 0.029 0.971 37 H 0.260 0.740 38 H 0.035 0.965 39 H 0.034 0.966 40 H 0.408 0.592 41 H 0.111 0.889 42 H 0.152 0.848 43 H 0.176 0.824 44 H 0.178 0.822 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.464 1.881 -4.972 22.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.106 4.106 3 H 0.102 0.898 4 C -0.160 4.160 5 C -0.010 4.010 6 N -0.335 5.335 7 C -0.366 4.366 8 H 0.060 0.940 9 C -0.227 4.227 10 N -0.604 5.604 11 Si 0.776 3.224 12 H -0.195 1.195 13 H -0.248 1.248 14 H -0.191 1.191 15 C 0.008 3.992 16 C 0.038 3.962 17 H 0.102 0.898 18 N -0.347 5.347 19 C 0.300 3.700 20 O -0.464 6.464 21 C -0.139 4.139 22 C -0.045 4.045 23 C -0.094 4.094 24 C -0.132 4.132 25 C 0.026 3.974 26 F -0.119 7.119 27 C 0.023 3.977 28 F -0.125 7.125 29 C -0.145 4.145 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.047 0.953 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.245 0.755 41 H 0.129 0.871 42 H 0.169 0.831 43 H 0.194 0.806 44 H 0.196 0.804 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -21.131 2.158 -5.696 21.991 hybrid contribution 1.823 -0.254 0.360 1.875 sum -19.308 1.904 -5.337 20.122 Atomic orbital electron populations 1.21747 0.92590 1.02510 1.02351 1.21277 0.97306 0.99288 0.92682 0.89809 1.21990 0.94404 1.01107 0.98449 1.21474 0.95228 0.96242 0.88016 1.44339 1.48614 1.39424 1.01105 1.18693 1.10344 1.02220 1.05362 0.94042 1.25845 0.97792 0.98607 1.00484 1.69959 1.34377 1.23970 1.32072 0.85924 0.75431 0.81647 0.79356 1.19466 1.24823 1.19070 1.21411 0.93931 0.96327 0.87499 1.21307 0.93330 0.82380 0.99215 0.89777 1.45840 1.66388 1.13502 1.09008 1.20849 0.76970 0.88746 0.83437 1.90690 1.52281 1.71183 1.32256 1.20759 1.07051 0.91857 0.94204 1.19421 0.92930 0.95903 0.96248 1.21347 0.98534 0.96977 0.92574 1.21398 0.97553 0.97583 0.96715 1.17961 0.95389 1.03481 0.80522 1.91486 1.96916 1.86654 1.36804 1.17921 0.83793 1.02055 0.93976 1.91476 1.53227 1.81489 1.86280 1.21090 1.00782 0.99564 0.93109 0.92049 0.91199 0.92422 0.89426 0.91614 0.93135 0.95289 0.93124 0.94670 0.94771 0.75531 0.87109 0.83068 0.80625 0.80440 0.84736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 9.05 71.98 0.65 -1.49 16 2 C -0.09 -1.95 2.48 -10.77 -0.03 -1.97 16 3 H 0.08 1.85 8.14 -2.39 -0.02 1.84 16 4 C -0.12 -3.13 5.20 30.67 0.16 -2.97 16 5 C 0.11 4.31 4.20 86.36 0.36 4.67 16 6 N -0.61 -26.77 2.68 -699.12 -1.88 -28.64 16 7 C -0.24 -12.96 10.03 84.03 0.84 -12.12 16 8 H 0.04 2.58 8.06 -2.91 -0.02 2.55 16 9 C -0.03 -1.86 5.23 84.86 0.44 -1.41 16 10 N -0.96 -58.99 13.97 21.65 0.30 -58.69 16 11 Si 0.95 45.38 24.35 68.60 1.67 47.05 16 12 H -0.27 -11.81 6.63 99.48 0.66 -11.15 16 13 H -0.32 -15.92 7.11 99.48 0.71 -15.21 16 14 H -0.27 -12.33 6.63 99.48 0.66 -11.67 16 15 C 0.13 5.17 6.12 86.36 0.53 5.70 16 16 C 0.14 4.11 2.24 45.07 0.10 4.21 16 17 H 0.08 2.41 7.58 -2.39 -0.02 2.40 16 18 N -0.70 -18.29 4.26 -442.16 -1.88 -20.17 16 19 C 0.51 14.15 7.79 87.66 0.68 14.84 16 20 O -0.58 -20.86 15.70 -3.03 -0.05 -20.91 16 21 C -0.10 -1.92 5.83 29.10 0.17 -1.75 16 22 C -0.04 -0.97 4.37 -19.87 -0.09 -1.05 16 23 C -0.08 -1.27 9.70 22.27 0.22 -1.05 16 24 C -0.11 -2.01 10.02 22.31 0.22 -1.79 16 25 C 0.05 1.15 7.31 22.41 0.16 1.32 16 26 F -0.14 -3.68 17.18 44.97 0.77 -2.90 16 27 C 0.04 1.22 7.31 22.41 0.16 1.38 16 28 F -0.15 -4.70 17.18 44.97 0.77 -3.93 16 29 C -0.13 -3.45 9.68 22.31 0.22 -3.23 16 30 H 0.06 0.90 7.54 -2.39 -0.02 0.88 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 32 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.07 1.67 6.41 -2.39 -0.02 1.66 16 35 H 0.05 2.13 4.49 -2.39 -0.01 2.12 16 36 H 0.03 1.08 7.09 -2.39 -0.02 1.06 16 37 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 38 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.03 1.52 7.93 -2.39 -0.02 1.50 16 40 H 0.41 9.45 6.64 -92.71 -0.62 8.83 16 41 H 0.11 2.22 8.08 -2.39 -0.02 2.20 16 42 H 0.15 1.51 8.08 -2.39 -0.02 1.49 16 43 H 0.18 1.58 8.06 -2.91 -0.02 1.55 16 44 H 0.18 1.89 8.06 -2.91 -0.02 1.86 16 45 H 0.13 3.87 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -74.58 367.33 4.84 -69.74 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.31 Total: 15.17 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 4.81 Total: 3.29 kcal Atomic # 7 Polarization: -104.05 SS G_CDS: -3.46 Total: -107.51 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.05 Total: -20.91 kcal Atomic # 9 Polarization: -8.38 SS G_CDS: 1.55 Total: -6.83 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.67 Total: 47.05 kcal Total: -74.58 4.84 -69.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968107819.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.105 kcal (2) G-P(sol) polarization free energy of solvation -74.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds