Wall clock time and date at job start Tue Mar 31 2020 22:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.45720 * 2 1 4 4 C 1.53045 * 109.45977 * 240.03227 * 2 1 3 5 5 C 1.53186 * 109.31313 * 178.61287 * 4 2 1 6 6 N 1.46927 * 108.77731 * 54.63323 * 5 4 2 7 7 C 1.36932 * 120.63177 * 126.41349 * 6 5 4 8 8 H 1.08004 * 120.00038 * 207.66728 * 7 6 5 9 9 C 1.38814 * 119.99982 * 27.66313 * 7 6 5 10 10 N 1.31612 * 120.00200 * 17.37133 * 9 7 6 11 11 Si 1.86798 * 119.99944 * 197.36766 * 9 7 6 12 12 H 1.48495 * 109.47316 * 89.99828 * 11 9 7 13 13 H 1.48500 * 109.47279 * 210.00580 * 11 9 7 14 14 H 1.48509 * 109.47014 * 329.99891 * 11 9 7 15 15 C 1.46931 * 118.73618 * 306.39136 * 6 5 4 16 16 C 1.53033 * 109.45952 * 119.96228 * 2 1 3 17 17 H 1.08995 * 109.49878 * 61.43633 * 16 2 1 18 18 N 1.46495 * 109.49655 * 301.36728 * 16 2 1 19 19 C 1.34780 * 120.00106 * 155.00519 * 18 16 2 20 20 O 1.21293 * 119.99477 * 359.97438 * 19 18 16 21 21 C 1.50690 * 120.00500 * 180.02562 * 19 18 16 22 22 C 1.50695 * 109.47514 * 179.97438 * 21 19 18 23 23 C 1.38205 * 120.00216 * 264.72192 * 22 21 19 24 24 C 1.38431 * 120.00016 * 179.76615 * 23 22 21 25 25 F 1.35101 * 120.00231 * 180.23188 * 24 23 22 26 26 C 1.38470 * 119.99733 * 0.53259 * 24 23 22 27 27 C 1.38163 * 120.00356 * 359.72381 * 26 24 23 28 28 C 1.38438 * 119.99946 * 84.99569 * 22 21 19 29 29 F 1.35101 * 119.99853 * 359.97438 * 28 22 21 30 30 H 1.09002 * 109.46838 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47215 * 299.96914 * 1 2 3 32 32 H 1.09004 * 109.47225 * 59.97496 * 1 2 3 33 33 H 1.09002 * 109.49510 * 298.56589 * 4 2 1 34 34 H 1.09002 * 109.49762 * 58.65560 * 4 2 1 35 35 H 1.08996 * 109.58858 * 174.41929 * 5 4 2 36 36 H 1.09000 * 109.58501 * 294.84718 * 5 4 2 37 37 H 0.96996 * 120.00390 * 179.97438 * 10 9 7 38 38 H 1.08998 * 109.59021 * 293.82309 * 15 6 5 39 39 H 1.08998 * 109.69942 * 173.46367 * 15 6 5 40 40 H 0.97000 * 120.00070 * 334.99967 * 18 16 2 41 41 H 1.09010 * 109.47150 * 299.99657 * 21 19 18 42 42 H 1.09005 * 109.47168 * 59.99171 * 21 19 18 43 43 H 1.08002 * 120.00092 * 0.02562 * 23 22 21 44 44 H 1.08006 * 119.99983 * 179.70265 * 26 24 23 45 45 H 1.08004 * 119.99757 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7208 -1.2501 5 6 3.5713 -0.6886 -1.2643 6 7 4.0679 -1.2488 0.0000 7 6 4.9765 -2.2732 0.0000 8 1 5.0098 -2.9655 0.8284 9 6 5.8547 -2.4222 -1.0646 10 7 6.0604 -1.4204 -1.8931 11 14 6.7446 -4.0444 -1.3215 12 1 5.9275 -4.9243 -2.1950 13 1 8.0592 -3.7915 -1.9642 14 1 6.9546 -4.7069 -0.0091 15 6 3.5714 -0.6884 1.2642 16 6 2.0398 -0.7206 1.2501 17 1 1.6979 -1.7555 1.2384 18 7 1.5250 -0.0489 2.4458 19 6 1.3966 -0.7326 3.6002 20 8 1.7069 -1.9042 3.6489 21 6 0.8664 -0.0419 4.8301 22 6 0.8214 -1.0200 5.9756 23 6 -0.3493 -1.6970 6.2607 24 6 -0.3892 -2.5991 7.3099 25 9 -1.5323 -3.2644 7.5856 26 6 0.7407 -2.8150 8.0807 27 6 1.9095 -2.1343 7.7991 28 6 1.9511 -1.2363 6.7460 29 9 3.0941 -0.5707 6.4704 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5133 0.8903 32 1 -0.3634 0.5142 -0.8898 33 1 1.6978 -1.7557 -1.2383 34 1 1.6571 -0.2209 -2.1399 35 1 3.9417 -1.2846 -2.0984 36 1 3.9142 0.3409 -1.3675 37 1 6.6744 -1.5243 -2.6368 38 1 3.9142 0.3412 1.3672 39 1 3.9417 -1.2822 2.0999 40 1 1.2765 0.8879 2.4068 41 1 1.5198 0.7914 5.0890 42 1 -0.1382 0.3320 4.6323 43 1 -1.2318 -1.5254 5.6622 44 1 0.7082 -3.5153 8.9024 45 1 2.7909 -2.3030 8.4001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968110595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:11 Heat of formation + Delta-G solvation = -88.642902 kcal Electronic energy + Delta-G solvation = -29548.011945 eV Core-core repulsion = 25201.596710 eV Total energy + Delta-G solvation = -4346.415235 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.14817 -49.05408 -40.04848 -38.91588 -37.57048 -34.47383 -33.29012 -32.93368 -31.09226 -30.44184 -29.30217 -27.90911 -27.00170 -24.09542 -23.37001 -22.80029 -21.85072 -21.03835 -20.18606 -19.35597 -17.87801 -17.46323 -17.42095 -17.00567 -16.77986 -15.92728 -15.68559 -15.45830 -15.05834 -14.72706 -14.57923 -14.48323 -13.91165 -13.83331 -13.68490 -13.55731 -13.42088 -13.15826 -13.12498 -12.84078 -12.46469 -12.15738 -12.03833 -11.94563 -11.64711 -11.49815 -11.30369 -11.02142 -10.79956 -10.65375 -10.26033 -10.14363 -9.96902 -9.85418 -9.64034 -9.59251 -9.29247 -8.80306 -8.72526 -8.38328 -6.66087 -5.76611 -3.18557 0.70051 0.76526 2.79473 3.00172 3.41700 3.45626 3.48323 3.51776 3.87954 3.97957 4.18524 4.36740 4.53795 4.66447 4.84910 4.89689 5.03064 5.13011 5.18210 5.28028 5.38648 5.43738 5.48379 5.61657 5.66296 5.71967 5.79654 5.85823 5.89000 5.95608 6.06606 6.17179 6.22786 6.27965 6.52640 6.56037 6.63265 6.68642 6.73801 6.84248 7.01608 7.36477 7.65679 7.72143 7.85342 8.41251 8.48948 9.24179 9.86387 10.41873 11.32124 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012948 B = 0.003006 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.038347 B = 9311.150951 C =10404.226464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 H 0.067 0.933 4 C -0.134 4.134 5 C 0.167 3.833 6 N -0.587 5.587 7 C -0.250 4.250 8 H 0.067 0.933 9 C 0.002 3.998 10 N -0.904 5.904 11 Si 0.902 3.098 12 H -0.287 1.287 13 H -0.291 1.291 14 H -0.278 1.278 15 C 0.142 3.858 16 C 0.133 3.867 17 H 0.086 0.914 18 N -0.719 5.719 19 C 0.512 3.488 20 O -0.528 6.528 21 C -0.106 4.106 22 C -0.067 4.067 23 C -0.114 4.114 24 C 0.088 3.912 25 F -0.137 7.137 26 C -0.126 4.126 27 C -0.124 4.124 28 C 0.108 3.892 29 F -0.129 7.129 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.089 0.911 36 H 0.018 0.982 37 H 0.253 0.747 38 H 0.017 0.983 39 H 0.057 0.943 40 H 0.395 0.605 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.144 0.856 44 H 0.144 0.856 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.204 5.619 16.111 22.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.085 0.915 4 C -0.173 4.173 5 C 0.042 3.958 6 N -0.310 5.310 7 C -0.379 4.379 8 H 0.084 0.916 9 C -0.196 4.196 10 N -0.549 5.549 11 Si 0.732 3.268 12 H -0.214 1.214 13 H -0.218 1.218 14 H -0.204 1.204 15 C 0.014 3.986 16 C 0.028 3.972 17 H 0.104 0.896 18 N -0.370 5.370 19 C 0.296 3.704 20 O -0.403 6.403 21 C -0.146 4.146 22 C -0.069 4.069 23 C -0.132 4.132 24 C 0.069 3.931 25 F -0.115 7.115 26 C -0.145 4.145 27 C -0.143 4.143 28 C 0.088 3.912 29 F -0.107 7.107 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.037 0.963 37 H 0.063 0.937 38 H 0.034 0.966 39 H 0.076 0.924 40 H 0.228 0.772 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.162 0.838 44 H 0.162 0.838 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.830 4.751 15.994 22.323 hybrid contribution 0.390 -0.307 -0.242 0.552 sum -14.440 4.444 15.752 21.826 Atomic orbital electron populations 1.21851 0.96039 1.01524 1.00678 1.21305 0.94517 0.99665 0.95515 0.91483 1.22250 1.00694 0.99540 0.94853 1.20846 0.87308 0.97302 0.90392 1.43997 1.48084 1.39804 0.99129 1.19240 1.09684 1.02831 1.06181 0.91567 1.25008 0.97209 0.97507 0.99863 1.70034 1.37875 1.28978 1.18000 0.86276 0.78712 0.83709 0.78060 1.21407 1.21776 1.20365 1.21180 0.90115 0.96606 0.90659 1.21764 0.96697 0.96915 0.81848 0.89625 1.46085 1.66194 1.14177 1.10550 1.20227 0.78621 0.87369 0.84142 1.90771 1.49066 1.16102 1.84397 1.20654 1.04599 0.97950 0.91369 1.19141 0.92275 0.99125 0.96336 1.20833 0.98854 0.96340 0.97218 1.17570 0.82885 0.95274 0.97401 1.91514 1.47951 1.78878 1.93205 1.20966 0.91349 1.01322 1.00860 1.20968 0.99276 0.96410 0.97615 1.17493 0.82261 0.94946 0.96486 1.91537 1.47596 1.78443 1.93170 0.92972 0.93425 0.92986 0.92449 0.92731 0.89237 0.96345 0.93676 0.96554 0.92422 0.77191 0.87265 0.87301 0.83847 0.83779 0.83583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.02 37.16 0.34 -1.46 16 2 C -0.09 -1.42 2.27 -90.58 -0.21 -1.62 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 4 C -0.13 -2.47 5.36 -26.61 -0.14 -2.61 16 5 C 0.17 3.94 5.31 -3.71 -0.02 3.92 16 6 N -0.59 -15.01 2.99 -172.32 -0.52 -15.53 16 7 C -0.25 -7.10 9.59 -15.06 -0.14 -7.24 16 8 H 0.07 1.91 7.89 -52.48 -0.41 1.50 16 9 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 10 N -0.90 -26.42 11.19 55.49 0.62 -25.80 16 11 Si 0.90 22.29 29.59 -169.99 -5.03 17.26 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 15 C 0.14 3.11 6.09 -3.70 -0.02 3.09 16 16 C 0.13 2.34 2.06 -67.81 -0.14 2.20 16 17 H 0.09 1.76 7.58 -51.93 -0.39 1.37 16 18 N -0.72 -9.71 4.37 -53.69 -0.23 -9.95 16 19 C 0.51 7.37 7.79 -10.99 -0.09 7.28 16 20 O -0.53 -10.21 15.70 5.55 0.09 -10.13 16 21 C -0.11 -1.03 5.60 -29.04 -0.16 -1.20 16 22 C -0.07 -0.75 4.38 -104.56 -0.46 -1.21 16 23 C -0.11 -1.16 9.66 -39.52 -0.38 -1.54 16 24 C 0.09 0.91 7.30 -39.42 -0.29 0.62 16 25 F -0.14 -1.46 17.27 2.25 0.04 -1.43 16 26 C -0.13 -1.15 10.02 -39.52 -0.40 -1.55 16 27 C -0.12 -1.21 10.02 -39.52 -0.40 -1.61 16 28 C 0.11 1.28 7.24 -39.42 -0.29 1.00 16 29 F -0.13 -1.72 16.57 2.25 0.04 -1.69 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.50 7.35 -51.93 -0.38 0.12 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.09 2.38 6.04 -51.93 -0.31 2.06 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 1.37 7.94 -51.93 -0.41 0.96 16 40 H 0.39 3.95 8.31 -40.82 -0.34 3.61 16 41 H 0.11 0.91 7.79 -51.92 -0.40 0.50 16 42 H 0.11 0.70 8.05 -51.93 -0.42 0.28 16 43 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 44 H 0.14 0.95 8.06 -52.48 -0.42 0.52 16 45 H 0.15 1.10 8.06 -52.48 -0.42 0.68 16 LS Contribution 376.04 15.07 5.67 5.67 Total: -1.00 -33.41 376.04 -8.65 -42.06 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -6.44 Total: 1.47 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -2.88 Total: -1.95 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: -0.13 Total: -51.28 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.08 Total: -3.11 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.26 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.41 -8.65 -42.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968110595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.581 kcal (2) G-P(sol) polarization free energy of solvation -33.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds