Wall clock time and date at job start Tue Mar 31 2020 22:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.45720 * 2 1 4 4 C 1.53045 * 109.45977 * 240.03227 * 2 1 3 5 5 C 1.53186 * 109.31313 * 178.61287 * 4 2 1 6 6 N 1.46927 * 108.77731 * 54.63323 * 5 4 2 7 7 C 1.36932 * 120.63177 * 126.41349 * 6 5 4 8 8 H 1.08004 * 120.00038 * 207.66728 * 7 6 5 9 9 C 1.38814 * 119.99982 * 27.66313 * 7 6 5 10 10 N 1.31612 * 120.00200 * 17.37133 * 9 7 6 11 11 Si 1.86798 * 119.99944 * 197.36766 * 9 7 6 12 12 H 1.48495 * 109.47316 * 89.99828 * 11 9 7 13 13 H 1.48500 * 109.47279 * 210.00580 * 11 9 7 14 14 H 1.48509 * 109.47014 * 329.99891 * 11 9 7 15 15 C 1.46931 * 118.73618 * 306.39136 * 6 5 4 16 16 C 1.53033 * 109.45952 * 119.96228 * 2 1 3 17 17 H 1.08995 * 109.49878 * 61.43633 * 16 2 1 18 18 N 1.46495 * 109.49655 * 301.36728 * 16 2 1 19 19 C 1.34780 * 120.00106 * 155.00519 * 18 16 2 20 20 O 1.21293 * 119.99477 * 359.97438 * 19 18 16 21 21 C 1.50690 * 120.00500 * 180.02562 * 19 18 16 22 22 C 1.50695 * 109.47514 * 179.97438 * 21 19 18 23 23 C 1.38205 * 120.00216 * 264.72192 * 22 21 19 24 24 C 1.38431 * 120.00016 * 179.76615 * 23 22 21 25 25 F 1.35101 * 120.00231 * 180.23188 * 24 23 22 26 26 C 1.38470 * 119.99733 * 0.53259 * 24 23 22 27 27 C 1.38163 * 120.00356 * 359.72381 * 26 24 23 28 28 C 1.38438 * 119.99946 * 84.99569 * 22 21 19 29 29 F 1.35101 * 119.99853 * 359.97438 * 28 22 21 30 30 H 1.09002 * 109.46838 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47215 * 299.96914 * 1 2 3 32 32 H 1.09004 * 109.47225 * 59.97496 * 1 2 3 33 33 H 1.09002 * 109.49510 * 298.56589 * 4 2 1 34 34 H 1.09002 * 109.49762 * 58.65560 * 4 2 1 35 35 H 1.08996 * 109.58858 * 174.41929 * 5 4 2 36 36 H 1.09000 * 109.58501 * 294.84718 * 5 4 2 37 37 H 0.96996 * 120.00390 * 179.97438 * 10 9 7 38 38 H 1.08998 * 109.59021 * 293.82309 * 15 6 5 39 39 H 1.08998 * 109.69942 * 173.46367 * 15 6 5 40 40 H 0.97000 * 120.00070 * 334.99967 * 18 16 2 41 41 H 1.09010 * 109.47150 * 299.99657 * 21 19 18 42 42 H 1.09005 * 109.47168 * 59.99171 * 21 19 18 43 43 H 1.08002 * 120.00092 * 0.02562 * 23 22 21 44 44 H 1.08006 * 119.99983 * 179.70265 * 26 24 23 45 45 H 1.08004 * 119.99757 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7208 -1.2501 5 6 3.5713 -0.6886 -1.2643 6 7 4.0679 -1.2488 0.0000 7 6 4.9765 -2.2732 0.0000 8 1 5.0098 -2.9655 0.8284 9 6 5.8547 -2.4222 -1.0646 10 7 6.0604 -1.4204 -1.8931 11 14 6.7446 -4.0444 -1.3215 12 1 5.9275 -4.9243 -2.1950 13 1 8.0592 -3.7915 -1.9642 14 1 6.9546 -4.7069 -0.0091 15 6 3.5714 -0.6884 1.2642 16 6 2.0398 -0.7206 1.2501 17 1 1.6979 -1.7555 1.2384 18 7 1.5250 -0.0489 2.4458 19 6 1.3966 -0.7326 3.6002 20 8 1.7069 -1.9042 3.6489 21 6 0.8664 -0.0419 4.8301 22 6 0.8214 -1.0200 5.9756 23 6 -0.3493 -1.6970 6.2607 24 6 -0.3892 -2.5991 7.3099 25 9 -1.5323 -3.2644 7.5856 26 6 0.7407 -2.8150 8.0807 27 6 1.9095 -2.1343 7.7991 28 6 1.9511 -1.2363 6.7460 29 9 3.0941 -0.5707 6.4704 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5133 0.8903 32 1 -0.3634 0.5142 -0.8898 33 1 1.6978 -1.7557 -1.2383 34 1 1.6571 -0.2209 -2.1399 35 1 3.9417 -1.2846 -2.0984 36 1 3.9142 0.3409 -1.3675 37 1 6.6744 -1.5243 -2.6368 38 1 3.9142 0.3412 1.3672 39 1 3.9417 -1.2822 2.0999 40 1 1.2765 0.8879 2.4068 41 1 1.5198 0.7914 5.0890 42 1 -0.1382 0.3320 4.6323 43 1 -1.2318 -1.5254 5.6622 44 1 0.7082 -3.5153 8.9024 45 1 2.7909 -2.3030 8.4001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968110595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:10 Heat of formation + Delta-G solvation = -108.776698 kcal Electronic energy + Delta-G solvation = -29548.885012 eV Core-core repulsion = 25201.596710 eV Total energy + Delta-G solvation = -4347.288302 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.98458 -49.94585 -41.21668 -39.90942 -38.97583 -36.18082 -34.50916 -34.00469 -33.04264 -31.27109 -30.70655 -29.18050 -28.36341 -25.89350 -24.34530 -23.93067 -22.98601 -22.66686 -21.44879 -20.84816 -18.75796 -18.71963 -18.28122 -18.27377 -18.05028 -17.17191 -16.80406 -16.64938 -16.35307 -16.19268 -15.60456 -15.43529 -15.32634 -15.29367 -15.11778 -14.89540 -14.57409 -14.31576 -14.20381 -13.98594 -13.71579 -13.56246 -13.20680 -13.15035 -12.89049 -12.84657 -12.77126 -12.62392 -12.29980 -12.05771 -12.03092 -11.96842 -11.66294 -11.43162 -11.25494 -10.92449 -10.61466 -10.13604 -10.07618 -9.55401 -8.71707 -7.92930 -5.38356 -0.10449 0.00799 1.42161 1.43332 1.52836 1.67400 2.08292 2.42796 2.52872 3.10477 3.19680 3.20722 3.41967 3.62512 3.68388 3.76194 3.95667 4.00595 4.03821 4.11062 4.13962 4.35976 4.45084 4.48529 4.53691 4.66903 4.74255 4.76083 4.92402 4.93186 4.96505 4.97867 5.01359 5.03880 5.09852 5.11013 5.20444 5.24929 5.46024 5.46875 5.58564 5.60907 5.75977 5.76369 6.34291 6.63344 7.10560 7.34483 7.80373 8.29909 9.12573 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012948 B = 0.003006 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.038347 B = 9311.150951 C =10404.226464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.082 4.082 3 H 0.081 0.919 4 C -0.124 4.124 5 C 0.172 3.828 6 N -0.607 5.607 7 C -0.269 4.269 8 H 0.050 0.950 9 C -0.042 4.042 10 N -0.928 5.928 11 Si 0.964 3.036 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.276 1.276 15 C 0.144 3.856 16 C 0.152 3.848 17 H 0.053 0.947 18 N -0.705 5.705 19 C 0.508 3.492 20 O -0.583 6.583 21 C -0.095 4.095 22 C -0.081 4.081 23 C -0.116 4.116 24 C 0.076 3.924 25 F -0.140 7.140 26 C -0.122 4.122 27 C -0.127 4.127 28 C 0.079 3.921 29 F -0.144 7.144 30 H 0.041 0.959 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.044 0.956 34 H 0.083 0.917 35 H 0.054 0.946 36 H 0.005 0.995 37 H 0.253 0.747 38 H 0.020 0.980 39 H 0.025 0.975 40 H 0.417 0.583 41 H 0.127 0.873 42 H 0.153 0.847 43 H 0.163 0.837 44 H 0.170 0.830 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.479 6.716 16.876 25.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.102 4.102 3 H 0.100 0.900 4 C -0.163 4.163 5 C 0.047 3.953 6 N -0.331 5.331 7 C -0.399 4.399 8 H 0.068 0.932 9 C -0.238 4.238 10 N -0.574 5.574 11 Si 0.792 3.208 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.202 1.202 15 C 0.017 3.983 16 C 0.045 3.955 17 H 0.072 0.928 18 N -0.357 5.357 19 C 0.296 3.704 20 O -0.463 6.463 21 C -0.135 4.135 22 C -0.083 4.083 23 C -0.134 4.134 24 C 0.057 3.943 25 F -0.119 7.119 26 C -0.140 4.140 27 C -0.146 4.146 28 C 0.060 3.940 29 F -0.123 7.123 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.023 0.977 37 H 0.062 0.938 38 H 0.038 0.962 39 H 0.044 0.956 40 H 0.255 0.745 41 H 0.145 0.855 42 H 0.171 0.829 43 H 0.181 0.819 44 H 0.188 0.812 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -17.145 5.904 16.777 24.704 hybrid contribution 1.134 -0.663 -0.408 1.375 sum -16.012 5.241 16.368 23.490 Atomic orbital electron populations 1.21770 0.92667 1.01649 1.03048 1.21232 0.97131 0.99303 0.92492 0.90049 1.22086 0.96579 0.99776 0.97871 1.20716 0.90785 0.95365 0.88437 1.44222 1.48238 1.39736 1.00919 1.19379 1.10671 1.03742 1.06144 0.93199 1.25697 0.98060 1.00475 0.99586 1.70158 1.38432 1.30488 1.18276 0.85321 0.77620 0.79971 0.77877 1.20778 1.21308 1.20155 1.21221 0.93305 0.95564 0.88176 1.21183 0.93314 0.96287 0.84730 0.92841 1.45840 1.65472 1.15139 1.09239 1.21090 0.77317 0.86804 0.85207 1.90755 1.51370 1.18841 1.85284 1.20706 1.07121 0.97431 0.88194 1.19337 0.92306 0.99851 0.96756 1.21073 0.99271 0.95845 0.97258 1.17800 0.83129 0.95525 0.97874 1.91506 1.48146 1.78968 1.93256 1.21261 0.90580 1.01084 1.01105 1.21235 1.00282 0.95762 0.97274 1.17920 0.82236 0.96016 0.97872 1.91492 1.48467 1.78911 1.93438 0.93982 0.90709 0.91014 0.93747 0.89878 0.92767 0.97705 0.93796 0.96219 0.95628 0.74527 0.85478 0.82932 0.81905 0.81249 0.81788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 9.02 71.98 0.65 -2.19 16 2 C -0.08 -2.40 2.27 -10.77 -0.02 -2.43 16 3 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 4 C -0.12 -4.47 5.36 30.67 0.16 -4.30 16 5 C 0.17 8.32 5.31 86.36 0.46 8.78 16 6 N -0.61 -32.27 2.99 -699.09 -2.09 -34.36 16 7 C -0.27 -15.98 9.59 84.03 0.81 -15.17 16 8 H 0.05 3.05 7.89 -2.91 -0.02 3.03 16 9 C -0.04 -2.46 4.91 84.86 0.42 -2.04 16 10 N -0.93 -55.76 11.19 21.65 0.24 -55.52 16 11 Si 0.96 46.98 29.59 68.60 2.03 49.01 16 12 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 13 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 14 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 15 C 0.14 6.53 6.09 86.36 0.53 7.05 16 16 C 0.15 5.28 2.06 45.07 0.09 5.37 16 17 H 0.05 2.25 7.58 -2.39 -0.02 2.23 16 18 N -0.70 -17.73 4.37 -442.17 -1.93 -19.66 16 19 C 0.51 14.04 7.79 87.65 0.68 14.73 16 20 O -0.58 -22.97 15.70 -3.07 -0.05 -23.02 16 21 C -0.10 -1.61 5.60 29.10 0.16 -1.45 16 22 C -0.08 -1.69 4.38 -19.83 -0.09 -1.78 16 23 C -0.12 -2.16 9.66 22.31 0.22 -1.94 16 24 C 0.08 1.46 7.30 22.37 0.16 1.62 16 25 F -0.14 -2.78 17.27 44.97 0.78 -2.01 16 26 C -0.12 -2.03 10.02 22.31 0.22 -1.81 16 27 C -0.13 -2.37 10.02 22.31 0.22 -2.15 16 28 C 0.08 1.84 7.24 22.37 0.16 2.00 16 29 F -0.14 -3.89 16.57 44.97 0.74 -3.14 16 30 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 1.20 7.35 -2.39 -0.02 1.18 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.05 2.98 6.04 -2.39 -0.01 2.97 16 36 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 38 H 0.02 0.87 8.14 -2.39 -0.02 0.86 16 39 H 0.03 1.28 7.94 -2.39 -0.02 1.26 16 40 H 0.42 6.84 8.31 -92.71 -0.77 6.07 16 41 H 0.13 1.74 7.79 -2.38 -0.02 1.72 16 42 H 0.15 1.23 8.05 -2.38 -0.02 1.21 16 43 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 44 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 45 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -77.85 376.04 4.80 -73.05 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.24 Total: 11.35 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 4.84 Total: 4.30 kcal Atomic # 7 Polarization: -105.75 SS G_CDS: -3.78 Total: -109.54 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.05 Total: -23.02 kcal Atomic # 9 Polarization: -6.67 SS G_CDS: 1.52 Total: -5.15 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -77.85 4.80 -73.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968110595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.728 kcal (2) G-P(sol) polarization free energy of solvation -77.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds