Wall clock time and date at job start Tue Mar 31 2020 22:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.44974 * 2 1 4 4 C 1.53036 * 109.45788 * 119.96916 * 2 1 3 5 5 C 1.53195 * 109.31197 * 181.38434 * 4 2 1 6 6 N 1.46928 * 108.77468 * 305.36327 * 5 4 2 7 7 C 1.36929 * 120.62965 * 233.62595 * 6 5 4 8 8 H 1.08005 * 120.00013 * 152.60083 * 7 6 5 9 9 C 1.38808 * 120.00529 * 332.60714 * 7 6 5 10 10 N 1.31622 * 120.00395 * 159.36335 * 9 7 6 11 11 Si 1.86804 * 119.99709 * 339.35776 * 9 7 6 12 12 H 1.48500 * 109.47123 * 92.90409 * 11 9 7 13 13 H 1.48499 * 109.47235 * 212.89989 * 11 9 7 14 14 H 1.48498 * 109.46969 * 332.90224 * 11 9 7 15 15 C 1.46926 * 118.73648 * 53.60936 * 6 5 4 16 16 C 1.53044 * 109.45558 * 240.03527 * 2 1 3 17 17 H 1.08996 * 109.52695 * 298.57536 * 16 2 1 18 18 N 1.46496 * 109.50011 * 58.66533 * 16 2 1 19 19 C 1.34773 * 119.99753 * 204.83314 * 18 16 2 20 20 O 1.21277 * 120.00264 * 0.02562 * 19 18 16 21 21 C 1.50705 * 119.99686 * 180.02562 * 19 18 16 22 22 C 1.50706 * 109.47063 * 180.02562 * 21 19 18 23 23 C 1.38199 * 120.00221 * 99.99843 * 22 21 19 24 24 C 1.38435 * 119.99881 * 179.97438 * 23 22 21 25 25 F 1.35098 * 119.99881 * 180.02562 * 24 23 22 26 26 C 1.38468 * 119.99736 * 359.97438 * 24 23 22 27 27 C 1.38159 * 120.00184 * 359.97438 * 26 24 23 28 28 C 1.38428 * 119.99331 * 279.72250 * 22 21 19 29 29 F 1.35102 * 120.00256 * 0.02562 * 28 22 21 30 30 H 1.09001 * 109.47173 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46909 * 299.96630 * 1 2 3 32 32 H 1.08998 * 109.46815 * 59.96598 * 1 2 3 33 33 H 1.08995 * 109.50155 * 61.43557 * 4 2 1 34 34 H 1.08998 * 109.52367 * 301.35107 * 4 2 1 35 35 H 1.08999 * 109.58891 * 185.57413 * 5 4 2 36 36 H 1.09004 * 109.70213 * 65.22041 * 5 4 2 37 37 H 0.97003 * 119.99757 * 180.02562 * 10 9 7 38 38 H 1.09001 * 109.58521 * 186.60488 * 15 6 5 39 39 H 1.08993 * 109.58866 * 66.18082 * 15 6 5 40 40 H 0.97000 * 119.99798 * 24.83899 * 18 16 2 41 41 H 1.09005 * 109.46910 * 300.00149 * 21 19 18 42 42 H 1.08991 * 109.47625 * 59.99713 * 21 19 18 43 43 H 1.08000 * 120.00212 * 359.95416 * 23 22 21 44 44 H 1.07997 * 119.99541 * 180.02562 * 26 24 23 45 45 H 1.08008 * 120.00068 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7208 1.2500 5 6 3.5714 -0.6887 1.2642 6 7 4.0679 -1.2489 -0.0001 7 6 4.9757 -2.2740 -0.0001 8 1 5.0116 -2.9636 -0.8306 9 6 5.8498 -2.4271 1.0673 10 7 6.4261 -3.5904 1.2845 11 14 6.2085 -0.9820 2.1954 12 1 5.2793 -1.0154 3.3533 13 1 7.6088 -1.0694 2.6819 14 1 6.0225 0.2876 1.4478 15 6 3.5714 -0.6886 -1.2643 16 6 2.0398 -0.7208 -1.2502 17 1 1.6978 -1.7556 -1.2390 18 7 1.5256 -0.0487 -2.4460 19 6 1.4002 -0.7314 -3.6012 20 8 1.7127 -1.9021 -3.6507 21 6 0.8717 -0.0398 -4.8315 22 6 0.8300 -1.0169 -5.9782 23 6 -0.3625 -1.6214 -6.3279 24 6 -0.4009 -2.5186 -7.3815 25 9 -1.5667 -3.1092 -7.7237 26 6 0.7555 -2.8097 -8.0853 27 6 1.9475 -2.2045 -7.7363 28 6 1.9851 -1.3044 -6.6847 29 9 3.1499 -0.7095 -6.3460 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5133 0.8903 32 1 -0.3633 0.5144 -0.8897 33 1 1.6978 -1.7556 1.2382 34 1 1.6572 -0.2213 2.1401 35 1 3.9417 -1.2846 2.0984 36 1 3.9164 0.3401 1.3685 37 1 7.0366 -3.6973 2.0307 38 1 3.9416 -1.2845 -2.0985 39 1 3.9143 0.3408 -1.3674 40 1 1.2754 0.8877 -2.4063 41 1 -0.1337 0.3327 -4.6353 42 1 1.5245 0.7944 -5.0882 43 1 -1.2645 -1.3943 -5.7790 44 1 0.7255 -3.5093 -8.9075 45 1 2.8494 -2.4313 -8.2856 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968110596.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:14 Heat of formation + Delta-G solvation = -82.043498 kcal Electronic energy + Delta-G solvation = -29632.273032 eV Core-core repulsion = 25286.143969 eV Total energy + Delta-G solvation = -4346.129063 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.15531 -49.04169 -40.12203 -38.99153 -37.79128 -34.65798 -33.32763 -33.04220 -31.40359 -30.47071 -29.63681 -28.04507 -27.33092 -23.96845 -23.39442 -23.00131 -22.04148 -21.29588 -20.26413 -19.61754 -17.88880 -17.46908 -17.43695 -17.06711 -16.82332 -15.93805 -15.82890 -15.45520 -15.15615 -15.10765 -14.64904 -14.49019 -14.08754 -14.00395 -13.78297 -13.75459 -13.45222 -13.25136 -13.16809 -12.86826 -12.66134 -12.23951 -12.12412 -12.09216 -12.00671 -11.67409 -11.32261 -11.29715 -10.94866 -10.88667 -10.66471 -10.14054 -9.96344 -9.83852 -9.69413 -9.45495 -9.33177 -8.99365 -8.73006 -8.50750 -6.95690 -5.90967 -3.27573 0.69510 0.75954 2.74298 2.97841 3.32318 3.39575 3.49192 3.52030 3.86963 3.98191 4.17054 4.35484 4.55048 4.65551 4.80212 4.83928 4.95698 4.99826 5.05915 5.13809 5.15720 5.23760 5.43168 5.44930 5.65967 5.71612 5.73017 5.78828 5.80467 5.82433 5.85266 5.91963 6.02653 6.09571 6.25441 6.34147 6.48126 6.52142 6.53570 6.61198 6.65556 6.77937 6.95175 7.63448 7.99310 8.34974 8.39342 8.97644 9.75023 10.10615 11.25038 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015720 B = 0.002949 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.791544 B = 9491.084083 C =10384.004576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.068 0.932 4 C -0.126 4.126 5 C 0.122 3.878 6 N -0.601 5.601 7 C -0.258 4.258 8 H 0.086 0.914 9 C 0.023 3.977 10 N -0.908 5.908 11 Si 0.883 3.117 12 H -0.288 1.288 13 H -0.304 1.304 14 H -0.271 1.271 15 C 0.144 3.856 16 C 0.132 3.868 17 H 0.090 0.910 18 N -0.721 5.721 19 C 0.512 3.488 20 O -0.523 6.523 21 C -0.105 4.105 22 C -0.070 4.070 23 C -0.115 4.115 24 C 0.087 3.913 25 F -0.137 7.137 26 C -0.125 4.125 27 C -0.124 4.124 28 C 0.111 3.889 29 F -0.128 7.128 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.025 0.975 37 H 0.262 0.738 38 H 0.067 0.933 39 H 0.022 0.978 40 H 0.395 0.605 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.144 0.856 44 H 0.145 0.855 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.434 10.423 -15.440 24.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.087 0.913 4 C -0.166 4.166 5 C -0.004 4.004 6 N -0.325 5.325 7 C -0.386 4.386 8 H 0.104 0.896 9 C -0.175 4.175 10 N -0.551 5.551 11 Si 0.714 3.286 12 H -0.216 1.216 13 H -0.232 1.232 14 H -0.196 1.196 15 C 0.017 3.983 16 C 0.027 3.973 17 H 0.108 0.892 18 N -0.372 5.372 19 C 0.296 3.704 20 O -0.398 6.398 21 C -0.144 4.144 22 C -0.071 4.071 23 C -0.134 4.134 24 C 0.068 3.932 25 F -0.116 7.116 26 C -0.144 4.144 27 C -0.143 4.143 28 C 0.091 3.909 29 F -0.107 7.107 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.043 0.957 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.040 0.960 40 H 0.229 0.771 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.162 0.838 44 H 0.162 0.838 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -16.054 9.441 -15.381 24.154 hybrid contribution 0.200 1.193 0.786 1.443 sum -15.853 10.633 -14.595 24.029 Atomic orbital electron populations 1.21835 0.95536 1.01825 1.00888 1.21301 0.95033 0.99566 0.95189 0.91339 1.22068 0.98298 1.00681 0.95554 1.21404 0.91728 0.96966 0.90285 1.44285 1.48678 1.40465 0.99053 1.18951 1.09581 1.02580 1.07512 0.89609 1.25265 0.97440 0.96677 0.98157 1.69847 1.32641 1.21965 1.30614 0.86949 0.76280 0.84867 0.80543 1.21631 1.23184 1.19648 1.21218 0.90396 0.96735 0.89956 1.21721 0.96327 0.97305 0.81960 0.89162 1.46038 1.66479 1.14249 1.10429 1.20250 0.78586 0.87391 0.84147 1.90788 1.48637 1.16068 1.84350 1.20645 1.04584 0.97936 0.91283 1.19132 0.91963 0.99376 0.96652 1.20830 0.98627 0.96944 0.96985 1.17566 0.81993 0.96463 0.97191 1.91513 1.46100 1.82342 1.91597 1.20971 0.90851 1.01420 1.01163 1.20983 0.99242 0.96700 0.97332 1.17486 0.81511 0.95736 0.96146 1.91542 1.45809 1.81690 1.91628 0.92712 0.92883 0.93167 0.91391 0.92236 0.90752 0.95680 0.92791 0.91431 0.96044 0.77148 0.87319 0.87254 0.83843 0.83758 0.83544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.02 37.16 0.34 -1.29 16 2 C -0.09 -1.31 2.27 -90.58 -0.21 -1.51 16 3 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.13 -2.14 5.36 -26.61 -0.14 -2.29 16 5 C 0.12 2.62 4.21 -3.71 -0.02 2.61 16 6 N -0.60 -14.58 2.77 -172.32 -0.48 -15.06 16 7 C -0.26 -7.46 10.03 -15.06 -0.15 -7.61 16 8 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 9 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 10 N -0.91 -28.43 13.97 55.49 0.78 -27.65 16 11 Si 0.88 22.57 24.34 -169.99 -4.14 18.43 16 12 H -0.29 -7.05 6.62 56.52 0.37 -6.67 16 13 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 14 H -0.27 -6.79 6.64 56.52 0.38 -6.41 16 15 C 0.14 2.97 6.09 -3.71 -0.02 2.95 16 16 C 0.13 2.18 2.06 -67.81 -0.14 2.04 16 17 H 0.09 1.78 7.58 -51.93 -0.39 1.39 16 18 N -0.72 -9.06 4.37 -53.69 -0.23 -9.29 16 19 C 0.51 7.05 7.78 -10.98 -0.09 6.97 16 20 O -0.52 -9.93 15.62 5.56 0.09 -9.84 16 21 C -0.10 -0.97 5.56 -29.03 -0.16 -1.13 16 22 C -0.07 -0.76 4.42 -104.56 -0.46 -1.22 16 23 C -0.12 -1.13 9.65 -39.52 -0.38 -1.51 16 24 C 0.09 0.88 7.30 -39.42 -0.29 0.60 16 25 F -0.14 -1.44 17.27 2.25 0.04 -1.40 16 26 C -0.13 -1.14 10.02 -39.53 -0.40 -1.53 16 27 C -0.12 -1.22 10.02 -39.52 -0.40 -1.61 16 28 C 0.11 1.31 7.14 -39.43 -0.28 1.03 16 29 F -0.13 -1.73 16.66 2.25 0.04 -1.69 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.48 7.35 -51.93 -0.38 0.09 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.77 4.50 -51.93 -0.23 1.54 16 36 H 0.03 0.53 7.07 -51.93 -0.37 0.16 16 37 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 38 H 0.07 1.55 7.93 -51.93 -0.41 1.13 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.40 3.53 8.30 -40.82 -0.34 3.19 16 41 H 0.11 0.64 8.00 -51.93 -0.42 0.22 16 42 H 0.11 0.84 7.94 -51.93 -0.41 0.42 16 43 H 0.14 1.11 8.04 -52.49 -0.42 0.69 16 44 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 45 H 0.15 1.13 8.06 -52.48 -0.42 0.71 16 LS Contribution 369.57 15.07 5.57 5.57 Total: -1.00 -34.95 369.57 -7.60 -42.55 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -6.37 Total: 1.31 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -2.89 Total: -2.93 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: 0.06 Total: -52.00 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.08 Total: -3.09 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.14 Total: 18.43 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.95 -7.60 -42.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968110596.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.497 kcal (2) G-P(sol) polarization free energy of solvation -34.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds