Wall clock time and date at job start Tue Mar 31 2020 22:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.44974 * 2 1 4 4 C 1.53036 * 109.45788 * 119.96916 * 2 1 3 5 5 C 1.53195 * 109.31197 * 181.38434 * 4 2 1 6 6 N 1.46928 * 108.77468 * 305.36327 * 5 4 2 7 7 C 1.36929 * 120.62965 * 233.62595 * 6 5 4 8 8 H 1.08005 * 120.00013 * 152.60083 * 7 6 5 9 9 C 1.38808 * 120.00529 * 332.60714 * 7 6 5 10 10 N 1.31622 * 120.00395 * 159.36335 * 9 7 6 11 11 Si 1.86804 * 119.99709 * 339.35776 * 9 7 6 12 12 H 1.48500 * 109.47123 * 92.90409 * 11 9 7 13 13 H 1.48499 * 109.47235 * 212.89989 * 11 9 7 14 14 H 1.48498 * 109.46969 * 332.90224 * 11 9 7 15 15 C 1.46926 * 118.73648 * 53.60936 * 6 5 4 16 16 C 1.53044 * 109.45558 * 240.03527 * 2 1 3 17 17 H 1.08996 * 109.52695 * 298.57536 * 16 2 1 18 18 N 1.46496 * 109.50011 * 58.66533 * 16 2 1 19 19 C 1.34773 * 119.99753 * 204.83314 * 18 16 2 20 20 O 1.21277 * 120.00264 * 0.02562 * 19 18 16 21 21 C 1.50705 * 119.99686 * 180.02562 * 19 18 16 22 22 C 1.50706 * 109.47063 * 180.02562 * 21 19 18 23 23 C 1.38199 * 120.00221 * 99.99843 * 22 21 19 24 24 C 1.38435 * 119.99881 * 179.97438 * 23 22 21 25 25 F 1.35098 * 119.99881 * 180.02562 * 24 23 22 26 26 C 1.38468 * 119.99736 * 359.97438 * 24 23 22 27 27 C 1.38159 * 120.00184 * 359.97438 * 26 24 23 28 28 C 1.38428 * 119.99331 * 279.72250 * 22 21 19 29 29 F 1.35102 * 120.00256 * 0.02562 * 28 22 21 30 30 H 1.09001 * 109.47173 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46909 * 299.96630 * 1 2 3 32 32 H 1.08998 * 109.46815 * 59.96598 * 1 2 3 33 33 H 1.08995 * 109.50155 * 61.43557 * 4 2 1 34 34 H 1.08998 * 109.52367 * 301.35107 * 4 2 1 35 35 H 1.08999 * 109.58891 * 185.57413 * 5 4 2 36 36 H 1.09004 * 109.70213 * 65.22041 * 5 4 2 37 37 H 0.97003 * 119.99757 * 180.02562 * 10 9 7 38 38 H 1.09001 * 109.58521 * 186.60488 * 15 6 5 39 39 H 1.08993 * 109.58866 * 66.18082 * 15 6 5 40 40 H 0.97000 * 119.99798 * 24.83899 * 18 16 2 41 41 H 1.09005 * 109.46910 * 300.00149 * 21 19 18 42 42 H 1.08991 * 109.47625 * 59.99713 * 21 19 18 43 43 H 1.08000 * 120.00212 * 359.95416 * 23 22 21 44 44 H 1.07997 * 119.99541 * 180.02562 * 26 24 23 45 45 H 1.08008 * 120.00068 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7208 1.2500 5 6 3.5714 -0.6887 1.2642 6 7 4.0679 -1.2489 -0.0001 7 6 4.9757 -2.2740 -0.0001 8 1 5.0116 -2.9636 -0.8306 9 6 5.8498 -2.4271 1.0673 10 7 6.4261 -3.5904 1.2845 11 14 6.2085 -0.9820 2.1954 12 1 5.2793 -1.0154 3.3533 13 1 7.6088 -1.0694 2.6819 14 1 6.0225 0.2876 1.4478 15 6 3.5714 -0.6886 -1.2643 16 6 2.0398 -0.7208 -1.2502 17 1 1.6978 -1.7556 -1.2390 18 7 1.5256 -0.0487 -2.4460 19 6 1.4002 -0.7314 -3.6012 20 8 1.7127 -1.9021 -3.6507 21 6 0.8717 -0.0398 -4.8315 22 6 0.8300 -1.0169 -5.9782 23 6 -0.3625 -1.6214 -6.3279 24 6 -0.4009 -2.5186 -7.3815 25 9 -1.5667 -3.1092 -7.7237 26 6 0.7555 -2.8097 -8.0853 27 6 1.9475 -2.2045 -7.7363 28 6 1.9851 -1.3044 -6.6847 29 9 3.1499 -0.7095 -6.3460 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5133 0.8903 32 1 -0.3633 0.5144 -0.8897 33 1 1.6978 -1.7556 1.2382 34 1 1.6572 -0.2213 2.1401 35 1 3.9417 -1.2846 2.0984 36 1 3.9164 0.3401 1.3685 37 1 7.0366 -3.6973 2.0307 38 1 3.9416 -1.2845 -2.0985 39 1 3.9143 0.3408 -1.3674 40 1 1.2754 0.8877 -2.4063 41 1 -0.1337 0.3327 -4.6353 42 1 1.5245 0.7944 -5.0882 43 1 -1.2645 -1.3943 -5.7790 44 1 0.7255 -3.5093 -8.9075 45 1 2.8494 -2.4313 -8.2856 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968110596.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:13 Heat of formation + Delta-G solvation = -105.552115 kcal Electronic energy + Delta-G solvation = -29633.292442 eV Core-core repulsion = 25286.143969 eV Total energy + Delta-G solvation = -4347.148473 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.98243 -49.94922 -41.25723 -39.97845 -39.09624 -36.27042 -34.57472 -34.03481 -33.42154 -31.34646 -30.91696 -29.31092 -28.53874 -25.67922 -24.52629 -24.00486 -23.03673 -22.91951 -21.47162 -20.96999 -18.82745 -18.73214 -18.30133 -18.27542 -18.05701 -17.35351 -16.90499 -16.77542 -16.36341 -16.34111 -15.71790 -15.41537 -15.35251 -15.27583 -15.18854 -15.07700 -14.62550 -14.48116 -14.30738 -14.08153 -13.76027 -13.70464 -13.58189 -13.28934 -12.93483 -12.83199 -12.69995 -12.57578 -12.49900 -12.21350 -12.05729 -11.78526 -11.60976 -11.39067 -11.27925 -11.02183 -10.76396 -10.13954 -10.12402 -9.55533 -8.94338 -8.19831 -5.53842 -0.10708 0.00284 1.28110 1.40140 1.50674 1.67034 2.06748 2.39218 2.45278 3.03097 3.10362 3.20120 3.34546 3.41491 3.62013 3.72450 3.90579 3.94912 3.99794 4.05271 4.11549 4.30345 4.37149 4.41931 4.48300 4.52404 4.57721 4.73619 4.82632 4.85479 4.92345 4.95540 4.97376 4.98649 5.00700 5.07613 5.09533 5.15282 5.17220 5.38076 5.44954 5.59953 5.75886 5.81952 6.08029 6.62547 6.87747 7.35048 7.57807 7.95342 9.00736 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015720 B = 0.002949 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.791544 B = 9491.084083 C =10384.004576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.083 4.083 3 H 0.095 0.905 4 C -0.121 4.121 5 C 0.114 3.886 6 N -0.617 5.617 7 C -0.257 4.257 8 H 0.032 0.968 9 C -0.037 4.037 10 N -0.960 5.960 11 Si 0.960 3.040 12 H -0.266 1.266 13 H -0.310 1.310 14 H -0.256 1.256 15 C 0.144 3.856 16 C 0.148 3.852 17 H 0.049 0.951 18 N -0.703 5.703 19 C 0.507 3.493 20 O -0.584 6.584 21 C -0.094 4.094 22 C -0.082 4.082 23 C -0.116 4.116 24 C 0.076 3.924 25 F -0.140 7.140 26 C -0.122 4.122 27 C -0.129 4.129 28 C 0.080 3.920 29 F -0.145 7.145 30 H 0.038 0.962 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.045 0.955 34 H 0.097 0.903 35 H 0.049 0.951 36 H 0.045 0.955 37 H 0.263 0.737 38 H 0.025 0.975 39 H 0.043 0.957 40 H 0.419 0.581 41 H 0.154 0.846 42 H 0.130 0.870 43 H 0.167 0.833 44 H 0.169 0.831 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.186 14.310 -15.028 28.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.102 4.102 3 H 0.113 0.887 4 C -0.161 4.161 5 C -0.010 4.010 6 N -0.342 5.342 7 C -0.387 4.387 8 H 0.050 0.950 9 C -0.232 4.232 10 N -0.606 5.606 11 Si 0.787 3.213 12 H -0.192 1.192 13 H -0.239 1.239 14 H -0.180 1.180 15 C 0.018 3.982 16 C 0.041 3.959 17 H 0.067 0.933 18 N -0.356 5.356 19 C 0.294 3.706 20 O -0.463 6.463 21 C -0.133 4.133 22 C -0.084 4.084 23 C -0.134 4.134 24 C 0.056 3.944 25 F -0.118 7.118 26 C -0.141 4.141 27 C -0.148 4.148 28 C 0.061 3.939 29 F -0.124 7.124 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.115 0.885 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.044 0.956 39 H 0.061 0.939 40 H 0.257 0.743 41 H 0.172 0.828 42 H 0.148 0.852 43 H 0.184 0.816 44 H 0.186 0.814 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -18.871 13.410 -14.985 27.577 hybrid contribution 1.041 -0.139 0.527 1.175 sum -17.830 13.271 -14.458 26.515 Atomic orbital electron populations 1.21774 0.92606 1.01596 1.03304 1.21270 0.97308 0.99752 0.91882 0.88704 1.22003 0.94778 1.00516 0.98778 1.21553 0.94918 0.96825 0.87747 1.44351 1.48414 1.39943 1.01515 1.18756 1.10973 1.02987 1.05946 0.94995 1.26011 0.97321 0.99367 1.00481 1.70005 1.34063 1.24389 1.32125 0.85716 0.75729 0.80919 0.78891 1.19192 1.23914 1.18036 1.21290 0.93356 0.96392 0.87152 1.21201 0.93215 0.96399 0.85108 0.93275 1.45779 1.65582 1.15243 1.08989 1.21128 0.77282 0.86784 0.85363 1.90777 1.51169 1.19058 1.85319 1.20714 1.07240 0.97374 0.87994 1.19361 0.91858 1.00060 0.97098 1.21097 0.99154 0.96323 0.96847 1.17796 0.82172 0.96760 0.97652 1.91506 1.46255 1.82426 1.91655 1.21252 0.90168 1.01211 1.01454 1.21235 1.00288 0.96223 0.97057 1.17934 0.81516 0.96940 0.97534 1.91492 1.46799 1.82136 1.91938 0.94321 0.90630 0.90613 0.93613 0.88489 0.93294 0.93741 0.92783 0.95595 0.93949 0.74254 0.82822 0.85223 0.81572 0.81352 0.82016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.02 71.98 0.65 -1.81 16 2 C -0.08 -2.08 2.27 -10.77 -0.02 -2.10 16 3 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 4 C -0.12 -3.81 5.36 30.67 0.16 -3.65 16 5 C 0.11 4.71 4.21 86.36 0.36 5.08 16 6 N -0.62 -30.58 2.77 -699.09 -1.94 -32.51 16 7 C -0.26 -15.76 10.03 84.03 0.84 -14.91 16 8 H 0.03 2.24 8.06 -2.91 -0.02 2.21 16 9 C -0.04 -2.28 5.23 84.86 0.44 -1.84 16 10 N -0.96 -63.12 13.97 21.65 0.30 -62.82 16 11 Si 0.96 47.30 24.34 68.60 1.67 48.97 16 12 H -0.27 -12.04 6.62 99.48 0.66 -11.38 16 13 H -0.31 -15.52 7.11 99.48 0.71 -14.81 16 14 H -0.26 -11.86 6.64 99.48 0.66 -11.20 16 15 C 0.14 6.05 6.09 86.36 0.53 6.58 16 16 C 0.15 4.77 2.06 45.07 0.09 4.86 16 17 H 0.05 2.02 7.58 -2.39 -0.02 2.00 16 18 N -0.70 -16.11 4.37 -442.16 -1.93 -18.04 16 19 C 0.51 13.50 7.78 87.66 0.68 14.18 16 20 O -0.58 -23.05 15.62 -3.02 -0.05 -23.09 16 21 C -0.09 -1.49 5.56 29.11 0.16 -1.33 16 22 C -0.08 -1.69 4.42 -19.83 -0.09 -1.78 16 23 C -0.12 -2.09 9.65 22.31 0.22 -1.87 16 24 C 0.08 1.44 7.30 22.37 0.16 1.60 16 25 F -0.14 -2.76 17.27 44.97 0.78 -1.98 16 26 C -0.12 -2.10 10.02 22.31 0.22 -1.88 16 27 C -0.13 -2.53 10.02 22.31 0.22 -2.30 16 28 C 0.08 1.91 7.14 22.37 0.16 2.07 16 29 F -0.15 -4.02 16.66 44.97 0.75 -3.27 16 30 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.01 7.35 -2.39 -0.02 1.00 16 33 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.05 2.27 4.50 -2.39 -0.01 2.26 16 36 H 0.04 1.69 7.07 -2.38 -0.02 1.68 16 37 H 0.26 16.25 8.31 -92.71 -0.77 15.48 16 38 H 0.03 1.26 7.93 -2.39 -0.02 1.24 16 39 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.42 5.60 8.30 -92.71 -0.77 4.83 16 41 H 0.15 1.04 8.00 -2.38 -0.02 1.02 16 42 H 0.13 1.57 7.94 -2.39 -0.02 1.55 16 43 H 0.17 2.10 8.04 -2.91 -0.02 2.08 16 44 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 45 H 0.16 2.48 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -84.66 369.57 4.54 -80.12 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.15 Total: 11.74 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 4.80 Total: 0.89 kcal Atomic # 7 Polarization: -109.81 SS G_CDS: -3.57 Total: -113.38 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.05 Total: -23.09 kcal Atomic # 9 Polarization: -6.77 SS G_CDS: 1.53 Total: -5.25 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 1.67 Total: 48.97 kcal Total: -84.66 4.54 -80.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968110596.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.428 kcal (2) G-P(sol) polarization free energy of solvation -84.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds