Wall clock time and date at job start Tue Mar 31 2020 22:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.44466 * 2 1 4 4 C 1.53042 * 109.45767 * 119.96356 * 2 1 3 5 5 C 1.53191 * 109.31171 * 181.38969 * 4 2 1 6 6 N 1.46923 * 108.77113 * 305.36234 * 5 4 2 7 7 C 1.36946 * 120.63112 * 233.63319 * 6 5 4 8 8 H 1.07995 * 120.00362 * 152.61606 * 7 6 5 9 9 C 1.38811 * 119.99617 * 332.61165 * 7 6 5 10 10 N 1.31623 * 119.99904 * 159.36828 * 9 7 6 11 11 Si 1.86802 * 120.00246 * 339.37210 * 9 7 6 12 12 H 1.48498 * 109.47454 * 92.93027 * 11 9 7 13 13 H 1.48503 * 109.47027 * 212.93047 * 11 9 7 14 14 H 1.48496 * 109.46997 * 332.92582 * 11 9 7 15 15 C 1.46925 * 118.74353 * 53.61141 * 6 5 4 16 16 C 1.53036 * 109.46003 * 240.03016 * 2 1 3 17 17 H 1.08998 * 109.52367 * 58.64742 * 16 2 1 18 18 N 1.46503 * 109.49648 * 298.56706 * 16 2 1 19 19 C 1.34780 * 119.99818 * 155.16501 * 18 16 2 20 20 O 1.21284 * 119.99914 * 0.27029 * 19 18 16 21 21 C 1.50696 * 120.00105 * 179.97438 * 19 18 16 22 22 C 1.50695 * 109.47144 * 179.97438 * 21 19 18 23 23 C 1.38203 * 120.00367 * 264.72282 * 22 21 19 24 24 C 1.38425 * 120.00290 * 179.85951 * 23 22 21 25 25 F 1.35104 * 120.00178 * 180.16618 * 24 23 22 26 26 C 1.38477 * 120.00026 * 0.37477 * 24 23 22 27 27 C 1.38158 * 119.99689 * 359.83534 * 26 24 23 28 28 C 1.38434 * 119.99815 * 84.99957 * 22 21 19 29 29 F 1.35097 * 120.00124 * 359.95961 * 28 22 21 30 30 H 1.08998 * 109.46992 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47426 * 299.96827 * 1 2 3 32 32 H 1.09000 * 109.46698 * 59.97137 * 1 2 3 33 33 H 1.08997 * 109.50082 * 61.43156 * 4 2 1 34 34 H 1.09009 * 109.49525 * 301.33712 * 4 2 1 35 35 H 1.09003 * 109.58767 * 185.57762 * 5 4 2 36 36 H 1.08991 * 109.58960 * 65.14716 * 5 4 2 37 37 H 0.96997 * 119.99940 * 180.02562 * 10 9 7 38 38 H 1.08998 * 109.58812 * 186.60272 * 15 6 5 39 39 H 1.09003 * 109.70235 * 66.24266 * 15 6 5 40 40 H 0.96999 * 120.00260 * 335.16296 * 18 16 2 41 41 H 1.09002 * 109.46772 * 299.99968 * 21 19 18 42 42 H 1.08994 * 109.47033 * 59.99938 * 21 19 18 43 43 H 1.08004 * 119.99839 * 0.02562 * 23 22 21 44 44 H 1.08001 * 120.00131 * 179.81077 * 26 24 23 45 45 H 1.07997 * 119.99912 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7207 1.2501 5 6 3.5714 -0.6885 1.2644 6 7 4.0678 -1.2488 0.0002 7 6 4.9757 -2.2740 0.0002 8 1 5.0119 -2.9634 -0.8302 9 6 5.8497 -2.4270 1.0678 10 7 6.4259 -3.5903 1.2851 11 14 6.2080 -0.9820 2.1962 12 1 5.2790 -1.0160 3.3542 13 1 7.6085 -1.0690 2.6823 14 1 6.0213 0.2876 1.4489 15 6 3.5714 -0.6887 -1.2641 16 6 2.0399 -0.7208 -1.2500 17 1 1.6573 -0.2213 -2.1400 18 7 1.5801 -2.1117 -1.2341 19 6 1.4548 -2.7933 -2.3901 20 8 1.7272 -2.2567 -3.4430 21 6 0.9824 -4.2242 -2.3737 22 6 0.9288 -4.7517 -3.7843 23 6 -0.2593 -4.7194 -4.4896 24 6 -0.3077 -5.2013 -5.7863 25 9 -1.4684 -5.1667 -6.4769 26 6 0.8324 -5.7228 -6.3743 27 6 2.0191 -5.7590 -5.6677 28 6 2.0685 -5.2738 -4.3717 29 9 3.2288 -5.3097 -3.6807 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5133 0.8902 32 1 -0.3633 0.5143 -0.8898 33 1 1.6978 -1.7555 1.2385 34 1 1.6571 -0.2206 2.1399 35 1 3.9417 -1.2844 2.0986 36 1 3.9142 0.3410 1.3674 37 1 7.0363 -3.6973 2.0312 38 1 3.9418 -1.2846 -2.0982 39 1 3.9143 0.3406 -1.3698 40 1 1.3660 -2.5422 -0.3916 41 1 1.6733 -4.8282 -1.7855 42 1 -0.0118 -4.2735 -1.9298 43 1 -1.1493 -4.3158 -4.0299 44 1 0.7939 -6.1015 -7.3850 45 1 2.9082 -6.1661 -6.1261 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968110597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:16 Heat of formation + Delta-G solvation = -101.545087 kcal Electronic energy + Delta-G solvation = -30232.104193 eV Core-core repulsion = 25885.129477 eV Total energy + Delta-G solvation = -4346.974716 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.98868 -49.93848 -41.30298 -40.01213 -38.99186 -36.06768 -34.30265 -33.95082 -33.36869 -31.42432 -31.03502 -29.26961 -28.53677 -25.60846 -24.42474 -24.04580 -23.33649 -22.85744 -21.59076 -20.35867 -18.76723 -18.70799 -18.30888 -18.27902 -18.07636 -17.19928 -16.86479 -16.80526 -16.35767 -16.22830 -15.62798 -15.42506 -15.32942 -15.24519 -15.17561 -15.01095 -14.80645 -14.35931 -14.22464 -14.07753 -13.76837 -13.68900 -13.60032 -13.09437 -12.98718 -12.87760 -12.77885 -12.63001 -12.34118 -12.20292 -12.05737 -11.82957 -11.56078 -11.36453 -11.15361 -10.93803 -10.71484 -10.13481 -9.99869 -9.55619 -8.85714 -8.14885 -5.46516 -0.10358 0.00715 1.28782 1.42410 1.50899 1.69336 2.16931 2.41563 2.53814 3.08436 3.09660 3.21488 3.32083 3.42419 3.62687 3.76736 3.91943 3.96349 4.01256 4.03895 4.10729 4.31572 4.36457 4.48169 4.53690 4.56660 4.69597 4.71414 4.78074 4.86972 4.92247 4.96430 4.97378 5.00576 5.02508 5.03948 5.10603 5.16327 5.22329 5.40646 5.49540 5.67065 5.76185 5.87888 6.12898 6.64718 6.93342 7.33040 7.63699 8.02662 9.05366 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014814 B = 0.003559 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.633743 B = 7865.244988 C = 9276.124706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.086 4.086 3 H 0.087 0.913 4 C -0.121 4.121 5 C 0.115 3.885 6 N -0.610 5.610 7 C -0.239 4.239 8 H 0.037 0.963 9 C -0.033 4.033 10 N -0.958 5.958 11 Si 0.950 3.050 12 H -0.267 1.267 13 H -0.317 1.317 14 H -0.265 1.265 15 C 0.135 3.865 16 C 0.143 3.857 17 H 0.084 0.916 18 N -0.695 5.695 19 C 0.514 3.486 20 O -0.582 6.582 21 C -0.102 4.102 22 C -0.078 4.078 23 C -0.113 4.113 24 C 0.081 3.919 25 F -0.137 7.137 26 C -0.118 4.118 27 C -0.126 4.126 28 C 0.073 3.927 29 F -0.151 7.151 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.032 0.968 37 H 0.260 0.740 38 H 0.031 0.969 39 H 0.039 0.961 40 H 0.407 0.593 41 H 0.104 0.896 42 H 0.149 0.851 43 H 0.165 0.835 44 H 0.174 0.826 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.223 0.219 -7.751 20.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.105 4.105 3 H 0.105 0.895 4 C -0.160 4.160 5 C -0.009 4.009 6 N -0.335 5.335 7 C -0.368 4.368 8 H 0.055 0.945 9 C -0.228 4.228 10 N -0.604 5.604 11 Si 0.780 3.220 12 H -0.194 1.194 13 H -0.246 1.246 14 H -0.189 1.189 15 C 0.009 3.991 16 C 0.037 3.963 17 H 0.102 0.898 18 N -0.346 5.346 19 C 0.301 3.699 20 O -0.463 6.463 21 C -0.141 4.141 22 C -0.079 4.079 23 C -0.131 4.131 24 C 0.061 3.939 25 F -0.116 7.116 26 C -0.137 4.137 27 C -0.144 4.144 28 C 0.054 3.946 29 F -0.129 7.129 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.069 0.931 36 H 0.050 0.950 37 H 0.069 0.931 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.244 0.756 41 H 0.122 0.878 42 H 0.167 0.833 43 H 0.183 0.817 44 H 0.192 0.808 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -18.935 0.539 -8.399 20.721 hybrid contribution 1.285 0.033 0.889 1.563 sum -17.650 0.572 -7.510 19.190 Atomic orbital electron populations 1.21751 0.92668 1.02371 1.02445 1.21283 0.97250 0.99395 0.92566 0.89466 1.21996 0.94534 1.00972 0.98492 1.21482 0.95134 0.96361 0.87955 1.44328 1.48410 1.39624 1.01107 1.18674 1.10363 1.02434 1.05367 0.94520 1.25878 0.97676 0.98785 1.00459 1.69979 1.34261 1.24144 1.32038 0.85870 0.75496 0.81453 0.79229 1.19380 1.24612 1.18941 1.21393 0.93777 0.96393 0.87521 1.21354 0.93520 0.82093 0.99359 0.89813 1.45823 1.66343 1.13666 1.08796 1.20727 0.76985 0.88519 0.83634 1.90665 1.52186 1.71168 1.32232 1.20663 1.06751 0.92393 0.94339 1.19281 0.92322 0.99542 0.96774 1.21020 0.98700 1.00313 0.93115 1.17711 0.82501 1.02637 0.91016 1.91510 1.46528 1.94605 1.78928 1.21253 0.90072 1.00123 1.02221 1.21218 1.00472 1.00858 0.91875 1.18075 0.81674 1.02667 0.92233 1.91527 1.47404 1.94531 1.79462 0.92347 0.90947 0.92442 0.91902 0.89180 0.93083 0.95012 0.93061 0.95068 0.94343 0.75606 0.87784 0.83316 0.81707 0.80842 0.81929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.05 71.98 0.65 -1.75 16 2 C -0.09 -2.08 2.48 -10.77 -0.03 -2.11 16 3 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 4 C -0.12 -3.34 5.20 30.67 0.16 -3.18 16 5 C 0.11 4.47 4.20 86.36 0.36 4.84 16 6 N -0.61 -27.94 2.69 -699.11 -1.88 -29.82 16 7 C -0.24 -13.61 10.04 84.03 0.84 -12.77 16 8 H 0.04 2.40 8.06 -2.91 -0.02 2.38 16 9 C -0.03 -1.95 5.23 84.86 0.44 -1.51 16 10 N -0.96 -60.44 13.97 21.65 0.30 -60.14 16 11 Si 0.95 46.26 24.35 68.60 1.67 47.93 16 12 H -0.27 -11.95 6.62 99.48 0.66 -11.29 16 13 H -0.32 -15.95 7.11 99.48 0.71 -15.24 16 14 H -0.26 -12.42 6.63 99.48 0.66 -11.76 16 15 C 0.14 5.49 6.12 86.36 0.53 6.02 16 16 C 0.14 4.42 2.24 45.07 0.10 4.52 16 17 H 0.08 2.60 7.58 -2.39 -0.02 2.58 16 18 N -0.70 -20.71 4.25 -442.16 -1.88 -22.59 16 19 C 0.51 16.44 7.79 87.66 0.68 17.12 16 20 O -0.58 -22.95 15.70 -3.04 -0.05 -23.00 16 21 C -0.10 -2.52 5.60 29.10 0.16 -2.36 16 22 C -0.08 -2.01 4.38 -19.83 -0.09 -2.10 16 23 C -0.11 -2.39 9.66 22.31 0.22 -2.17 16 24 C 0.08 1.66 7.30 22.37 0.16 1.82 16 25 F -0.14 -2.78 17.27 44.97 0.78 -2.01 16 26 C -0.12 -2.19 10.02 22.31 0.22 -1.97 16 27 C -0.13 -2.80 10.02 22.31 0.22 -2.58 16 28 C 0.07 2.12 7.24 22.37 0.16 2.28 16 29 F -0.15 -5.47 16.57 44.97 0.74 -4.73 16 30 H 0.06 0.99 7.54 -2.39 -0.02 0.98 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 1.74 6.40 -2.39 -0.02 1.72 16 34 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 35 H 0.05 2.22 4.49 -2.39 -0.01 2.21 16 36 H 0.03 1.21 7.08 -2.39 -0.02 1.19 16 37 H 0.26 15.63 8.31 -92.71 -0.77 14.85 16 38 H 0.03 1.47 7.93 -2.39 -0.02 1.45 16 39 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.41 10.89 6.64 -92.71 -0.62 10.27 16 41 H 0.10 2.79 7.79 -2.39 -0.02 2.77 16 42 H 0.15 2.28 8.05 -2.39 -0.02 2.26 16 43 H 0.17 2.60 8.06 -2.91 -0.02 2.58 16 44 H 0.17 2.08 8.06 -2.91 -0.02 2.05 16 45 H 0.16 2.92 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -75.70 366.47 4.81 -70.89 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.31 Total: 19.36 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 4.81 Total: 4.10 kcal Atomic # 7 Polarization: -109.10 SS G_CDS: -3.46 Total: -112.55 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.05 Total: -23.00 kcal Atomic # 9 Polarization: -8.25 SS G_CDS: 1.52 Total: -6.73 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.67 Total: 47.93 kcal Total: -75.70 4.81 -70.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968110597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.655 kcal (2) G-P(sol) polarization free energy of solvation -75.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds