Wall clock time and date at job start Tue Mar 31 2020 22:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.44749 * 2 1 4 4 C 1.53037 * 109.46388 * 240.03168 * 2 1 3 5 5 C 1.53189 * 109.31637 * 178.61743 * 4 2 1 6 6 N 1.46918 * 108.77883 * 54.63306 * 5 4 2 7 7 C 1.36935 * 120.63562 * 126.36833 * 6 5 4 8 8 H 1.08001 * 120.00601 * 207.69216 * 7 6 5 9 9 C 1.38824 * 119.99360 * 27.69104 * 7 6 5 10 10 N 1.31609 * 119.99887 * 17.36423 * 9 7 6 11 11 Si 1.86796 * 119.99622 * 197.36115 * 9 7 6 12 12 H 1.48506 * 109.47200 * 90.00218 * 11 9 7 13 13 H 1.48499 * 109.47047 * 209.99969 * 11 9 7 14 14 H 1.48498 * 109.47332 * 330.00149 * 11 9 7 15 15 C 1.46929 * 118.73908 * 306.39746 * 6 5 4 16 16 C 1.53044 * 109.45915 * 119.96128 * 2 1 3 17 17 H 1.09000 * 109.49451 * 61.40616 * 16 2 1 18 18 N 1.46499 * 109.49828 * 301.34039 * 16 2 1 19 19 C 1.34781 * 119.99630 * 155.00403 * 18 16 2 20 20 O 1.21282 * 120.00229 * 359.97438 * 19 18 16 21 21 C 1.50703 * 119.99447 * 180.02562 * 19 18 16 22 22 C 1.50705 * 109.46845 * 179.97438 * 21 19 18 23 23 C 1.38247 * 120.00115 * 99.99891 * 22 21 19 24 24 C 1.38216 * 120.07364 * 179.72438 * 23 22 21 25 25 C 1.38262 * 120.06487 * 0.27120 * 24 23 22 26 26 C 1.38367 * 120.00259 * 359.97438 * 25 24 23 27 27 F 1.35100 * 120.03533 * 179.97438 * 26 25 24 28 28 C 1.38370 * 119.99776 * 280.22934 * 22 21 19 29 29 F 1.35101 * 120.03608 * 0.02562 * 28 22 21 30 30 H 1.09004 * 109.47600 * 300.03401 * 1 2 3 31 31 H 1.09003 * 109.46991 * 60.03647 * 1 2 3 32 32 H 1.09004 * 109.47331 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.49699 * 298.56833 * 4 2 1 34 34 H 1.09003 * 109.49785 * 58.65853 * 4 2 1 35 35 H 1.09000 * 109.58834 * 174.42287 * 5 4 2 36 36 H 1.09011 * 109.58245 * 294.70416 * 5 4 2 37 37 H 0.97004 * 120.00086 * 179.97438 * 10 9 7 38 38 H 1.09002 * 109.58623 * 293.81419 * 15 6 5 39 39 H 1.09005 * 109.58858 * 173.39297 * 15 6 5 40 40 H 0.96996 * 120.00441 * 334.99265 * 18 16 2 41 41 H 1.08999 * 109.47408 * 59.99813 * 21 19 18 42 42 H 1.08997 * 109.47195 * 299.99120 * 21 19 18 43 43 H 1.08006 * 119.96460 * 359.97438 * 23 22 21 44 44 H 1.07994 * 119.96875 * 180.25632 * 24 23 22 45 45 H 1.08000 * 119.99440 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8928 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5714 -0.6886 -1.2641 6 7 4.0678 -1.2488 0.0001 7 6 4.9757 -2.2740 0.0002 8 1 5.0084 -2.9662 0.8285 9 6 5.8539 -2.4234 -1.0645 10 7 6.0602 -1.4217 -1.8928 11 14 6.7428 -4.0461 -1.3212 12 1 5.9252 -4.9256 -2.1949 13 1 8.0575 -3.7941 -1.9639 14 1 6.9523 -4.7088 -0.0089 15 6 3.5713 -0.6885 1.2643 16 6 2.0398 -0.7207 1.2502 17 1 1.6973 -1.7554 1.2387 18 7 1.5254 -0.0486 2.4460 19 6 1.3970 -0.7321 3.6005 20 8 1.7069 -1.9037 3.6493 21 6 0.8674 -0.0408 4.8304 22 6 0.8222 -1.0189 5.9761 23 6 1.8247 -1.0151 6.9281 24 6 1.7818 -1.9076 7.9826 25 6 0.7391 -2.8098 8.0844 26 6 -0.2631 -2.8196 7.1305 27 9 -1.2820 -3.7013 7.2291 28 6 -0.2201 -1.9238 6.0725 29 9 -1.1974 -1.9316 5.1397 30 1 -0.3634 0.5144 0.8897 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3634 -1.0277 0.0005 33 1 1.6978 -1.7556 -1.2382 34 1 1.6572 -0.2208 -2.1398 35 1 3.9417 -1.2846 -2.0983 36 1 3.9143 0.3407 -1.3698 37 1 6.6742 -1.5260 -2.6366 38 1 3.9142 0.3410 1.3675 39 1 3.9416 -1.2845 2.0986 40 1 1.2774 0.8883 2.4069 41 1 -0.1371 0.3333 4.6328 42 1 1.5211 0.7921 5.0890 43 1 2.6402 -0.3112 6.8500 44 1 2.5636 -1.9004 8.7276 45 1 0.7070 -3.5070 8.9087 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968365694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:20 Heat of formation + Delta-G solvation = -87.419099 kcal Electronic energy + Delta-G solvation = -29650.754050 eV Core-core repulsion = 25304.391884 eV Total energy + Delta-G solvation = -4346.362167 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.58522 -48.66539 -40.06470 -38.96907 -37.57153 -34.47276 -33.19747 -32.88170 -31.09427 -30.51718 -29.34294 -27.91514 -26.99943 -24.09102 -23.05765 -23.00577 -21.91801 -21.03819 -20.18612 -19.35264 -18.06227 -17.50473 -17.14224 -17.02878 -16.76012 -16.25117 -15.66083 -15.13278 -15.04442 -14.99242 -14.71693 -14.48496 -13.96413 -13.80516 -13.70446 -13.50929 -13.39689 -13.22092 -13.05702 -12.48117 -12.41157 -12.23979 -12.03174 -11.92738 -11.64338 -11.50355 -11.44643 -11.02465 -10.80455 -10.64922 -10.25975 -10.14379 -9.95717 -9.85542 -9.63609 -9.54213 -9.09063 -8.91833 -8.79358 -8.38813 -6.66938 -5.77478 -3.19435 0.71991 0.74545 2.80701 3.02443 3.41124 3.46149 3.47912 3.51483 3.59291 4.12148 4.22405 4.43665 4.53044 4.67434 4.81906 4.90072 5.05023 5.14097 5.15725 5.29419 5.39216 5.46988 5.51034 5.57871 5.61827 5.71878 5.84325 5.90616 5.97247 5.99467 6.07455 6.18362 6.23016 6.30581 6.52088 6.56807 6.63325 6.68354 6.73912 6.83819 7.00648 7.36229 7.65566 7.72838 7.84369 8.41746 8.48511 9.23292 9.85606 10.41041 11.31207 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013380 B = 0.003004 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.240198 B = 9319.271705 C =10420.149411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.067 0.933 4 C -0.134 4.134 5 C 0.167 3.833 6 N -0.587 5.587 7 C -0.250 4.250 8 H 0.067 0.933 9 C 0.003 3.997 10 N -0.904 5.904 11 Si 0.902 3.098 12 H -0.287 1.287 13 H -0.291 1.291 14 H -0.278 1.278 15 C 0.143 3.857 16 C 0.133 3.867 17 H 0.085 0.915 18 N -0.719 5.719 19 C 0.511 3.489 20 O -0.527 6.527 21 C -0.105 4.105 22 C -0.070 4.070 23 C -0.089 4.089 24 C -0.100 4.100 25 C -0.128 4.128 26 C 0.065 3.935 27 F -0.131 7.131 28 C 0.086 3.914 29 F -0.125 7.125 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.089 0.911 36 H 0.018 0.982 37 H 0.253 0.747 38 H 0.017 0.983 39 H 0.057 0.943 40 H 0.395 0.605 41 H 0.106 0.894 42 H 0.112 0.888 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.095 6.597 17.019 22.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.085 0.915 4 C -0.174 4.174 5 C 0.042 3.958 6 N -0.310 5.310 7 C -0.380 4.380 8 H 0.084 0.916 9 C -0.196 4.196 10 N -0.549 5.549 11 Si 0.732 3.268 12 H -0.214 1.214 13 H -0.218 1.218 14 H -0.204 1.204 15 C 0.015 3.985 16 C 0.027 3.973 17 H 0.104 0.896 18 N -0.370 5.370 19 C 0.296 3.704 20 O -0.403 6.403 21 C -0.145 4.145 22 C -0.071 4.071 23 C -0.107 4.107 24 C -0.118 4.118 25 C -0.147 4.147 26 C 0.045 3.955 27 F -0.109 7.109 28 C 0.065 3.935 29 F -0.104 7.104 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.107 0.893 36 H 0.037 0.963 37 H 0.063 0.937 38 H 0.034 0.966 39 H 0.076 0.924 40 H 0.228 0.772 41 H 0.124 0.876 42 H 0.130 0.870 43 H 0.158 0.842 44 H 0.159 0.841 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.808 5.690 16.864 21.928 hybrid contribution -0.037 -0.504 -0.423 0.660 sum -12.845 5.186 16.441 21.499 Atomic orbital electron populations 1.21853 0.96012 1.01589 1.00686 1.21300 0.94543 0.99620 0.95503 0.91494 1.22250 1.00666 0.99569 0.94872 1.20839 0.87312 0.97303 0.90388 1.43990 1.48114 1.39767 0.99141 1.19239 1.09700 1.02823 1.06223 0.91571 1.25008 0.97216 0.97493 0.99840 1.70035 1.37852 1.28983 1.17990 0.86279 0.78702 0.83717 0.78067 1.21399 1.21776 1.20370 1.21180 0.90108 0.96535 0.90662 1.21773 0.96656 0.96957 0.81878 0.89648 1.46080 1.66245 1.14171 1.10513 1.20234 0.78601 0.87375 0.84192 1.90770 1.49080 1.16020 1.84431 1.20659 1.04529 0.97890 0.91443 1.19270 0.93921 0.96829 0.97092 1.21025 0.97189 0.99298 0.93215 1.21038 0.97759 0.94534 0.98487 1.21080 0.93694 1.00984 0.98945 1.17643 0.88940 0.91714 0.97195 1.91523 1.57156 1.66298 1.95941 1.17460 0.89251 0.98468 0.88287 1.91522 1.59942 1.95627 1.63298 0.93405 0.92988 0.92953 0.92448 0.92728 0.89260 0.96341 0.93672 0.96556 0.92437 0.77204 0.87589 0.86986 0.84157 0.84127 0.83805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.02 37.15 0.34 -1.55 16 2 C -0.09 -1.43 2.27 -90.58 -0.21 -1.64 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 4 C -0.13 -2.49 5.36 -26.61 -0.14 -2.64 16 5 C 0.17 3.94 5.31 -3.72 -0.02 3.92 16 6 N -0.59 -14.92 2.99 -172.32 -0.52 -15.43 16 7 C -0.25 -7.07 9.59 -15.06 -0.14 -7.21 16 8 H 0.07 1.89 7.89 -52.49 -0.41 1.48 16 9 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 10 N -0.90 -26.29 11.19 55.49 0.62 -25.67 16 11 Si 0.90 22.19 29.59 -169.99 -5.03 17.16 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 C 0.14 3.08 6.09 -3.71 -0.02 3.06 16 16 C 0.13 2.34 2.07 -67.81 -0.14 2.20 16 17 H 0.09 1.79 7.58 -51.93 -0.39 1.39 16 18 N -0.72 -9.77 4.37 -53.69 -0.23 -10.01 16 19 C 0.51 7.42 7.78 -10.98 -0.09 7.33 16 20 O -0.53 -10.30 15.60 5.56 0.09 -10.22 16 21 C -0.11 -1.03 5.55 -29.03 -0.16 -1.19 16 22 C -0.07 -0.78 4.44 -104.57 -0.46 -1.24 16 23 C -0.09 -0.81 9.67 -39.59 -0.38 -1.19 16 24 C -0.10 -0.80 10.04 -39.58 -0.40 -1.20 16 25 C -0.13 -1.17 10.02 -39.52 -0.40 -1.57 16 26 C 0.07 0.79 7.31 -39.37 -0.29 0.50 16 27 F -0.13 -1.70 17.18 2.25 0.04 -1.66 16 28 C 0.09 1.11 7.12 -39.36 -0.28 0.83 16 29 F -0.13 -1.82 16.58 2.25 0.04 -1.78 16 30 H 0.05 0.54 7.36 -51.93 -0.38 0.16 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.09 2.37 6.03 -51.93 -0.31 2.06 16 36 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 37 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 1.34 7.93 -51.93 -0.41 0.92 16 40 H 0.39 3.97 8.31 -40.82 -0.34 3.63 16 41 H 0.11 0.85 7.95 -51.93 -0.41 0.44 16 42 H 0.11 0.73 8.00 -51.93 -0.42 0.31 16 43 H 0.14 0.94 8.04 -52.48 -0.42 0.52 16 44 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 45 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 375.88 15.07 5.66 5.66 Total: -1.00 -33.90 375.88 -8.66 -42.56 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -6.44 Total: 0.97 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -2.88 Total: -1.58 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: -0.13 Total: -51.11 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.08 Total: -3.44 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.90 -8.66 -42.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968365694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.862 kcal (2) G-P(sol) polarization free energy of solvation -33.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds