Wall clock time and date at job start Tue Mar 31 2020 22:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.44749 * 2 1 4 4 C 1.53037 * 109.46388 * 240.03168 * 2 1 3 5 5 C 1.53189 * 109.31637 * 178.61743 * 4 2 1 6 6 N 1.46918 * 108.77883 * 54.63306 * 5 4 2 7 7 C 1.36935 * 120.63562 * 126.36833 * 6 5 4 8 8 H 1.08001 * 120.00601 * 207.69216 * 7 6 5 9 9 C 1.38824 * 119.99360 * 27.69104 * 7 6 5 10 10 N 1.31609 * 119.99887 * 17.36423 * 9 7 6 11 11 Si 1.86796 * 119.99622 * 197.36115 * 9 7 6 12 12 H 1.48506 * 109.47200 * 90.00218 * 11 9 7 13 13 H 1.48499 * 109.47047 * 209.99969 * 11 9 7 14 14 H 1.48498 * 109.47332 * 330.00149 * 11 9 7 15 15 C 1.46929 * 118.73908 * 306.39746 * 6 5 4 16 16 C 1.53044 * 109.45915 * 119.96128 * 2 1 3 17 17 H 1.09000 * 109.49451 * 61.40616 * 16 2 1 18 18 N 1.46499 * 109.49828 * 301.34039 * 16 2 1 19 19 C 1.34781 * 119.99630 * 155.00403 * 18 16 2 20 20 O 1.21282 * 120.00229 * 359.97438 * 19 18 16 21 21 C 1.50703 * 119.99447 * 180.02562 * 19 18 16 22 22 C 1.50705 * 109.46845 * 179.97438 * 21 19 18 23 23 C 1.38247 * 120.00115 * 99.99891 * 22 21 19 24 24 C 1.38216 * 120.07364 * 179.72438 * 23 22 21 25 25 C 1.38262 * 120.06487 * 0.27120 * 24 23 22 26 26 C 1.38367 * 120.00259 * 359.97438 * 25 24 23 27 27 F 1.35100 * 120.03533 * 179.97438 * 26 25 24 28 28 C 1.38370 * 119.99776 * 280.22934 * 22 21 19 29 29 F 1.35101 * 120.03608 * 0.02562 * 28 22 21 30 30 H 1.09004 * 109.47600 * 300.03401 * 1 2 3 31 31 H 1.09003 * 109.46991 * 60.03647 * 1 2 3 32 32 H 1.09004 * 109.47331 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.49699 * 298.56833 * 4 2 1 34 34 H 1.09003 * 109.49785 * 58.65853 * 4 2 1 35 35 H 1.09000 * 109.58834 * 174.42287 * 5 4 2 36 36 H 1.09011 * 109.58245 * 294.70416 * 5 4 2 37 37 H 0.97004 * 120.00086 * 179.97438 * 10 9 7 38 38 H 1.09002 * 109.58623 * 293.81419 * 15 6 5 39 39 H 1.09005 * 109.58858 * 173.39297 * 15 6 5 40 40 H 0.96996 * 120.00441 * 334.99265 * 18 16 2 41 41 H 1.08999 * 109.47408 * 59.99813 * 21 19 18 42 42 H 1.08997 * 109.47195 * 299.99120 * 21 19 18 43 43 H 1.08006 * 119.96460 * 359.97438 * 23 22 21 44 44 H 1.07994 * 119.96875 * 180.25632 * 24 23 22 45 45 H 1.08000 * 119.99440 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8928 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5714 -0.6886 -1.2641 6 7 4.0678 -1.2488 0.0001 7 6 4.9757 -2.2740 0.0002 8 1 5.0084 -2.9662 0.8285 9 6 5.8539 -2.4234 -1.0645 10 7 6.0602 -1.4217 -1.8928 11 14 6.7428 -4.0461 -1.3212 12 1 5.9252 -4.9256 -2.1949 13 1 8.0575 -3.7941 -1.9639 14 1 6.9523 -4.7088 -0.0089 15 6 3.5713 -0.6885 1.2643 16 6 2.0398 -0.7207 1.2502 17 1 1.6973 -1.7554 1.2387 18 7 1.5254 -0.0486 2.4460 19 6 1.3970 -0.7321 3.6005 20 8 1.7069 -1.9037 3.6493 21 6 0.8674 -0.0408 4.8304 22 6 0.8222 -1.0189 5.9761 23 6 1.8247 -1.0151 6.9281 24 6 1.7818 -1.9076 7.9826 25 6 0.7391 -2.8098 8.0844 26 6 -0.2631 -2.8196 7.1305 27 9 -1.2820 -3.7013 7.2291 28 6 -0.2201 -1.9238 6.0725 29 9 -1.1974 -1.9316 5.1397 30 1 -0.3634 0.5144 0.8897 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3634 -1.0277 0.0005 33 1 1.6978 -1.7556 -1.2382 34 1 1.6572 -0.2208 -2.1398 35 1 3.9417 -1.2846 -2.0983 36 1 3.9143 0.3407 -1.3698 37 1 6.6742 -1.5260 -2.6366 38 1 3.9142 0.3410 1.3675 39 1 3.9416 -1.2845 2.0986 40 1 1.2774 0.8883 2.4069 41 1 -0.1371 0.3333 4.6328 42 1 1.5211 0.7921 5.0890 43 1 2.6402 -0.3112 6.8500 44 1 2.5636 -1.9004 8.7276 45 1 0.7070 -3.5070 8.9087 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968365694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:19 Heat of formation + Delta-G solvation = -108.271939 kcal Electronic energy + Delta-G solvation = -29651.658297 eV Core-core repulsion = 25304.391884 eV Total energy + Delta-G solvation = -4347.266414 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.52276 -49.61721 -41.22005 -39.94454 -38.98425 -36.17629 -34.50487 -33.86782 -33.03636 -31.27333 -30.78609 -29.19548 -28.35606 -25.89368 -24.26428 -23.83088 -23.09599 -22.67863 -21.45189 -20.85409 -18.94795 -18.74995 -18.35682 -18.12946 -17.92955 -17.23036 -17.13166 -16.65579 -16.19603 -16.02949 -15.75147 -15.59310 -15.48422 -15.29664 -15.10885 -14.90952 -14.62433 -14.38435 -14.14831 -14.01677 -13.57568 -13.24236 -13.15484 -13.13129 -13.00459 -12.77735 -12.72531 -12.61018 -12.30145 -12.22882 -12.02947 -11.96041 -11.67452 -11.43698 -11.25766 -10.90593 -10.60716 -10.07933 -9.89286 -9.72891 -8.70773 -7.92068 -5.37163 -0.04423 -0.03065 1.42594 1.44425 1.53429 1.68689 2.11144 2.45434 2.55280 2.81550 3.21866 3.28362 3.45916 3.68933 3.75561 3.76958 3.92198 3.99412 4.03957 4.12893 4.19891 4.34563 4.45363 4.51586 4.55042 4.66426 4.73929 4.81207 4.88614 4.92223 4.96068 4.99911 5.01981 5.10623 5.16966 5.19505 5.23522 5.28953 5.43728 5.46875 5.58857 5.61266 5.76172 5.78492 6.35229 6.63834 7.11449 7.35283 7.81563 8.30961 9.13497 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013380 B = 0.003004 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.240198 B = 9319.271705 C =10420.149411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.082 4.082 3 H 0.085 0.915 4 C -0.124 4.124 5 C 0.173 3.827 6 N -0.608 5.608 7 C -0.268 4.268 8 H 0.051 0.949 9 C -0.041 4.041 10 N -0.928 5.928 11 Si 0.963 3.037 12 H -0.284 1.284 13 H -0.287 1.287 14 H -0.275 1.275 15 C 0.146 3.854 16 C 0.150 3.850 17 H 0.048 0.952 18 N -0.705 5.705 19 C 0.507 3.493 20 O -0.584 6.584 21 C -0.095 4.095 22 C -0.085 4.085 23 C -0.089 4.089 24 C -0.092 4.092 25 C -0.125 4.125 26 C 0.036 3.964 27 F -0.145 7.145 28 C 0.052 3.948 29 F -0.144 7.144 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.037 0.963 33 H 0.041 0.959 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.007 0.993 37 H 0.253 0.747 38 H 0.025 0.975 39 H 0.030 0.970 40 H 0.417 0.583 41 H 0.127 0.873 42 H 0.154 0.846 43 H 0.169 0.831 44 H 0.178 0.822 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.489 8.497 18.517 24.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.101 4.101 3 H 0.103 0.897 4 C -0.164 4.164 5 C 0.047 3.953 6 N -0.331 5.331 7 C -0.399 4.399 8 H 0.069 0.931 9 C -0.237 4.237 10 N -0.573 5.573 11 Si 0.791 3.209 12 H -0.211 1.211 13 H -0.213 1.213 14 H -0.200 1.200 15 C 0.019 3.981 16 C 0.043 3.957 17 H 0.066 0.934 18 N -0.357 5.357 19 C 0.295 3.705 20 O -0.464 6.464 21 C -0.134 4.134 22 C -0.086 4.086 23 C -0.107 4.107 24 C -0.109 4.109 25 C -0.143 4.143 26 C 0.016 3.984 27 F -0.124 7.124 28 C 0.032 3.968 29 F -0.123 7.123 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.025 0.975 37 H 0.062 0.938 38 H 0.043 0.957 39 H 0.048 0.952 40 H 0.255 0.745 41 H 0.145 0.855 42 H 0.172 0.828 43 H 0.187 0.813 44 H 0.196 0.804 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -13.241 7.646 18.382 23.911 hybrid contribution 0.152 -1.094 -0.808 1.369 sum -13.089 6.552 17.574 22.872 Atomic orbital electron populations 1.21775 0.93141 1.01390 1.02954 1.21227 0.96748 0.99502 0.92639 0.89690 1.22091 0.96851 0.99601 0.97835 1.20696 0.90511 0.95507 0.88542 1.44213 1.48233 1.39737 1.00963 1.19385 1.10557 1.03745 1.06186 0.93089 1.25677 0.98101 1.00374 0.99593 1.70155 1.38423 1.30460 1.18270 0.85340 0.77611 0.80053 0.77900 1.21079 1.21277 1.20027 1.21215 0.92765 0.95878 0.88196 1.21197 0.93769 0.95996 0.84694 0.93417 1.45833 1.65552 1.15134 1.09170 1.21133 0.77264 0.86799 0.85334 1.90754 1.51478 1.18763 1.85358 1.20724 1.06329 0.98044 0.88297 1.19552 0.93939 0.96961 0.98169 1.21495 0.96945 0.99672 0.92619 1.21534 0.97739 0.93027 0.98639 1.21467 0.92861 1.01391 0.98629 1.18072 0.89803 0.92139 0.98394 1.91474 1.57974 1.66836 1.96105 1.17912 0.90077 1.00123 0.88730 1.91456 1.60834 1.95906 1.64101 0.90986 0.90909 0.94408 0.94049 0.89944 0.92846 0.97454 0.93822 0.95667 0.95165 0.74514 0.85483 0.82801 0.81314 0.80427 0.81390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 9.02 71.98 0.65 -2.47 16 2 C -0.08 -2.45 2.27 -10.77 -0.02 -2.47 16 3 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 4 C -0.12 -4.56 5.36 30.67 0.16 -4.40 16 5 C 0.17 8.31 5.31 86.36 0.46 8.77 16 6 N -0.61 -31.87 2.99 -699.08 -2.09 -33.96 16 7 C -0.27 -15.74 9.59 84.04 0.81 -14.94 16 8 H 0.05 3.07 7.89 -2.91 -0.02 3.04 16 9 C -0.04 -2.39 4.91 84.87 0.42 -1.97 16 10 N -0.93 -55.23 11.19 21.65 0.24 -54.99 16 11 Si 0.96 46.61 29.59 68.60 2.03 48.64 16 12 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 13 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 14 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 15 C 0.15 6.43 6.09 86.36 0.53 6.96 16 16 C 0.15 5.27 2.07 45.07 0.09 5.37 16 17 H 0.05 2.07 7.58 -2.39 -0.02 2.05 16 18 N -0.70 -17.87 4.37 -442.15 -1.93 -19.80 16 19 C 0.51 14.16 7.78 87.66 0.68 14.84 16 20 O -0.58 -23.34 15.60 -3.04 -0.05 -23.39 16 21 C -0.09 -1.59 5.55 29.10 0.16 -1.43 16 22 C -0.08 -1.76 4.44 -19.83 -0.09 -1.85 16 23 C -0.09 -1.36 9.67 22.27 0.22 -1.14 16 24 C -0.09 -1.19 10.04 22.27 0.22 -0.96 16 25 C -0.12 -2.08 10.02 22.31 0.22 -1.86 16 26 C 0.04 0.87 7.31 22.41 0.16 1.04 16 27 F -0.15 -3.94 17.18 44.97 0.77 -3.17 16 28 C 0.05 1.35 7.12 22.41 0.16 1.51 16 29 F -0.14 -4.33 16.58 44.97 0.75 -3.58 16 30 H 0.07 1.33 7.36 -2.39 -0.02 1.31 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.05 2.94 6.03 -2.39 -0.01 2.92 16 36 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 37 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 38 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.03 1.45 7.93 -2.38 -0.02 1.44 16 40 H 0.42 6.87 8.31 -92.71 -0.77 6.10 16 41 H 0.13 1.64 7.95 -2.39 -0.02 1.62 16 42 H 0.15 1.28 8.00 -2.39 -0.02 1.26 16 43 H 0.17 1.53 8.04 -2.91 -0.02 1.51 16 44 H 0.18 0.96 8.06 -2.91 -0.02 0.93 16 45 H 0.17 1.85 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -80.19 375.88 4.79 -75.40 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 0.24 Total: 9.86 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 4.83 Total: 4.99 kcal Atomic # 7 Polarization: -104.97 SS G_CDS: -3.78 Total: -108.75 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.05 Total: -23.39 kcal Atomic # 9 Polarization: -8.27 SS G_CDS: 1.52 Total: -6.75 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -80.19 4.79 -75.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968365694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.872 kcal (2) G-P(sol) polarization free energy of solvation -80.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds