Wall clock time and date at job start Tue Mar 31 2020 22:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.46369 * 2 1 4 4 C 1.53044 * 109.46294 * 119.96126 * 2 1 3 5 5 C 1.52763 * 109.38418 * 181.25931 * 4 2 1 6 6 N 1.46929 * 109.00553 * 305.58543 * 5 4 2 7 7 C 1.36940 * 120.62778 * 233.58054 * 6 5 4 8 8 H 1.07996 * 119.99733 * 27.44937 * 7 6 5 9 9 C 1.38810 * 120.00055 * 207.71952 * 7 6 5 10 10 N 1.31618 * 119.99641 * 16.99717 * 9 7 6 11 11 Si 1.86794 * 120.00176 * 196.99896 * 9 7 6 12 12 H 1.48509 * 109.47042 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47288 * 119.99906 * 11 9 7 14 14 H 1.48498 * 109.46944 * 240.00280 * 11 9 7 15 15 C 1.46924 * 118.74051 * 53.31136 * 6 5 4 16 16 C 1.53041 * 109.45913 * 240.02643 * 2 1 3 17 17 H 1.09004 * 109.49914 * 298.57040 * 16 2 1 18 18 N 1.46496 * 109.52362 * 58.64459 * 16 2 1 19 19 C 1.34784 * 120.00391 * 204.85321 * 18 16 2 20 20 O 1.21277 * 119.99429 * 0.02562 * 19 18 16 21 21 C 1.50700 * 120.00190 * 179.97438 * 19 18 16 22 22 C 1.50705 * 109.46801 * 180.02562 * 21 19 18 23 23 C 1.38250 * 119.99765 * 264.72170 * 22 21 19 24 24 C 1.38221 * 120.06858 * 179.77228 * 23 22 21 25 25 C 1.38261 * 120.06692 * 0.50668 * 24 23 22 26 26 C 1.38372 * 120.00066 * 359.74989 * 25 24 23 27 27 F 1.35093 * 120.03544 * 180.02562 * 26 25 24 28 28 C 1.38365 * 119.99810 * 85.00624 * 22 21 19 29 29 F 1.35100 * 120.03551 * 359.94739 * 28 22 21 30 30 H 1.08998 * 109.47268 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46612 * 299.97149 * 1 2 3 32 32 H 1.08993 * 109.47362 * 59.97071 * 1 2 3 33 33 H 1.09001 * 109.49447 * 301.33080 * 4 2 1 34 34 H 1.08995 * 109.49779 * 61.40039 * 4 2 1 35 35 H 1.08996 * 109.50927 * 185.70091 * 5 4 2 36 36 H 1.08998 * 109.43451 * 65.41912 * 5 4 2 37 37 H 0.97004 * 119.99499 * 179.97438 * 10 9 7 38 38 H 1.09005 * 109.58644 * 66.42563 * 15 6 5 39 39 H 1.08994 * 109.58933 * 186.70992 * 15 6 5 40 40 H 0.97006 * 120.00078 * 24.85818 * 18 16 2 41 41 H 1.08997 * 109.47185 * 300.00161 * 21 19 18 42 42 H 1.09000 * 109.46876 * 60.00302 * 21 19 18 43 43 H 1.08005 * 119.97079 * 0.03332 * 23 22 21 44 44 H 1.07995 * 119.96980 * 180.23960 * 24 23 22 45 45 H 1.07997 * 119.99827 * 179.76741 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7206 1.2501 5 6 3.5672 -0.6922 1.2642 6 7 4.0678 -1.2489 0.0000 7 6 4.9757 -2.2741 0.0001 8 1 5.0081 -2.9665 0.8282 9 6 5.8581 -2.4198 -1.0614 10 7 6.0623 -1.4176 -1.8898 11 14 6.7558 -4.0383 -1.3144 12 1 6.3548 -4.9977 -0.2540 13 1 6.4055 -4.5959 -2.6453 14 1 8.2211 -3.8078 -1.2443 15 6 3.5713 -0.6888 -1.2643 16 6 2.0398 -0.7209 -1.2500 17 1 1.6977 -1.7558 -1.2381 18 7 1.5255 -0.0497 -2.4463 19 6 1.4000 -0.7332 -3.6012 20 8 1.7126 -1.9040 -3.6498 21 6 0.8704 -0.0428 -4.8316 22 6 0.8289 -1.0207 -5.9776 23 6 1.8803 -1.0809 -6.8733 24 6 1.8460 -1.9805 -7.9221 25 6 0.7553 -2.8147 -8.0837 26 6 -0.3010 -2.7532 -7.1920 27 9 -1.3668 -3.5683 -7.3489 28 6 -0.2640 -1.8541 -6.1366 29 9 -1.2940 -1.7926 -5.2644 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5134 0.8903 32 1 -0.3634 0.5142 -0.8896 33 1 1.6573 -0.2204 2.1398 34 1 1.6974 -1.7553 1.2388 35 1 3.9347 -1.2905 2.0979 36 1 3.9098 0.3370 1.3714 37 1 6.6792 -1.5193 -2.6314 38 1 3.9142 0.3407 -1.3675 39 1 3.9436 -1.2833 -2.0985 40 1 1.2752 0.8867 -2.4073 41 1 -0.1352 0.3290 -4.6352 42 1 1.5226 0.7917 -5.0891 43 1 2.7314 -0.4273 -6.7509 44 1 2.6699 -2.0289 -8.6186 45 1 0.7279 -3.5146 -8.9058 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968365696.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:23 Heat of formation + Delta-G solvation = -87.098498 kcal Electronic energy + Delta-G solvation = -30026.582503 eV Core-core repulsion = 25680.234238 eV Total energy + Delta-G solvation = -4346.348265 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.49951 -48.58026 -39.89541 -38.84553 -37.50602 -34.33413 -33.14412 -32.90179 -30.97149 -30.39410 -29.29097 -27.74700 -27.06892 -24.07182 -22.97954 -22.91116 -21.83675 -21.01783 -20.01328 -19.30099 -17.96181 -17.38846 -17.02473 -16.91724 -16.75807 -16.15550 -15.58392 -14.99886 -14.96407 -14.93832 -14.57451 -14.38164 -13.87531 -13.73891 -13.63820 -13.56016 -13.30668 -13.11324 -12.93210 -12.44377 -12.26224 -12.14465 -11.97539 -11.81960 -11.64395 -11.56703 -11.34490 -10.89981 -10.71315 -10.61408 -10.43807 -10.13800 -9.97484 -9.89018 -9.52923 -9.45758 -8.95408 -8.80674 -8.51064 -8.42592 -6.65220 -5.75760 -3.18324 0.84696 0.86233 3.01551 3.15895 3.42108 3.50328 3.51698 3.64841 3.70683 4.23704 4.33995 4.54434 4.57375 4.80153 4.95498 5.05360 5.17141 5.20958 5.26740 5.30480 5.40295 5.52322 5.59589 5.63970 5.70102 5.84541 5.92001 5.98204 6.01197 6.03894 6.12486 6.13774 6.25834 6.40035 6.46678 6.54233 6.64160 6.74086 6.76722 6.96225 6.97196 7.30075 7.72942 7.83473 7.92886 8.48310 8.64913 9.23685 9.87562 10.42139 11.32480 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010647 B = 0.003865 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.277515 B = 7242.303673 C = 8966.964791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.067 0.933 4 C -0.126 4.126 5 C 0.142 3.858 6 N -0.589 5.589 7 C -0.255 4.255 8 H 0.066 0.934 9 C 0.007 3.993 10 N -0.900 5.900 11 Si 0.900 3.100 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.290 1.290 15 C 0.167 3.833 16 C 0.124 3.876 17 H 0.081 0.919 18 N -0.718 5.718 19 C 0.512 3.488 20 O -0.524 6.524 21 C -0.106 4.106 22 C -0.066 4.066 23 C -0.086 4.086 24 C -0.099 4.099 25 C -0.129 4.129 26 C 0.064 3.936 27 F -0.132 7.132 28 C 0.081 3.919 29 F -0.127 7.127 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.017 0.983 37 H 0.252 0.748 38 H 0.016 0.984 39 H 0.095 0.905 40 H 0.392 0.608 41 H 0.104 0.896 42 H 0.112 0.888 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.839 6.418 -9.509 17.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.085 0.915 4 C -0.165 4.165 5 C 0.016 3.984 6 N -0.311 5.311 7 C -0.384 4.384 8 H 0.084 0.916 9 C -0.192 4.192 10 N -0.544 5.544 11 Si 0.730 3.270 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.217 1.217 15 C 0.040 3.960 16 C 0.019 3.981 17 H 0.099 0.901 18 N -0.369 5.369 19 C 0.296 3.704 20 O -0.399 6.399 21 C -0.146 4.146 22 C -0.068 4.068 23 C -0.104 4.104 24 C -0.117 4.117 25 C -0.148 4.148 26 C 0.044 3.956 27 F -0.110 7.110 28 C 0.061 3.939 29 F -0.106 7.106 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.035 0.965 37 H 0.062 0.938 38 H 0.034 0.966 39 H 0.113 0.887 40 H 0.225 0.775 41 H 0.122 0.878 42 H 0.130 0.870 43 H 0.159 0.841 44 H 0.159 0.841 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.559 5.511 -9.620 16.752 hybrid contribution -0.034 -0.475 -0.037 0.478 sum -12.592 5.036 -9.657 16.649 Atomic orbital electron populations 1.21846 0.96009 1.01576 1.00694 1.21299 0.94558 0.99632 0.95596 0.91505 1.22000 0.98964 1.00074 0.95511 1.20871 0.90852 0.96489 0.90183 1.43962 1.47986 1.39997 0.99192 1.19198 1.09542 1.03163 1.06516 0.91588 1.25004 0.97128 0.97380 0.99684 1.70026 1.37435 1.29021 1.17904 0.86257 0.78936 0.83800 0.77999 1.20197 1.21437 1.21749 1.21092 0.86485 0.97385 0.91034 1.21990 0.98290 0.96374 0.81439 0.90101 1.46014 1.66281 1.14020 1.10546 1.20164 0.78698 0.87409 0.84117 1.90777 1.48701 1.16121 1.84318 1.20659 1.04395 0.97933 0.91568 1.19268 0.93121 0.97322 0.97055 1.21055 0.97146 0.98834 0.93385 1.21048 0.97620 0.94749 0.98254 1.21063 0.92851 1.01343 0.99562 1.17618 0.87153 0.93235 0.97561 1.91511 1.53763 1.70495 1.95264 1.17447 0.87459 0.99137 0.89844 1.91507 1.56269 1.95380 1.67407 0.92965 0.93160 0.93228 0.92596 0.92153 0.92644 0.96463 0.93784 0.96590 0.88685 0.77479 0.87773 0.87006 0.84076 0.84138 0.83865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.02 37.16 0.34 -1.54 16 2 C -0.09 -1.45 2.27 -90.58 -0.21 -1.66 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 4 C -0.13 -2.13 5.35 -26.83 -0.14 -2.27 16 5 C 0.14 2.94 6.49 -3.93 -0.03 2.92 16 6 N -0.59 -14.91 3.00 -172.58 -0.52 -15.43 16 7 C -0.25 -7.17 9.58 -15.06 -0.14 -7.31 16 8 H 0.07 1.83 7.88 -52.49 -0.41 1.41 16 9 C 0.01 0.20 4.92 -17.43 -0.09 0.11 16 10 N -0.90 -26.59 11.18 55.49 0.62 -25.97 16 11 Si 0.90 22.56 29.59 -169.99 -5.03 17.53 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 14 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 15 C 0.17 4.01 4.89 -3.71 -0.02 4.00 16 16 C 0.12 2.38 2.06 -67.81 -0.14 2.24 16 17 H 0.08 1.82 7.58 -51.93 -0.39 1.43 16 18 N -0.72 -11.16 4.37 -53.69 -0.23 -11.40 16 19 C 0.51 8.58 7.79 -10.98 -0.09 8.49 16 20 O -0.52 -11.57 15.70 5.56 0.09 -11.49 16 21 C -0.11 -1.24 5.60 -29.03 -0.16 -1.40 16 22 C -0.07 -0.86 4.38 -104.57 -0.46 -1.32 16 23 C -0.09 -0.97 9.68 -39.58 -0.38 -1.36 16 24 C -0.10 -0.98 10.04 -39.58 -0.40 -1.38 16 25 C -0.13 -1.38 10.02 -39.52 -0.40 -1.78 16 26 C 0.06 0.86 7.31 -39.37 -0.29 0.57 16 27 F -0.13 -1.84 17.18 2.25 0.04 -1.80 16 28 C 0.08 1.17 7.25 -39.37 -0.29 0.88 16 29 F -0.13 -1.95 16.48 2.25 0.04 -1.91 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.58 7.36 -51.93 -0.38 0.20 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 1.13 7.93 -51.93 -0.41 0.71 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.10 2.70 6.04 -51.93 -0.31 2.39 16 40 H 0.39 4.62 8.30 -40.82 -0.34 4.29 16 41 H 0.10 1.00 7.79 -51.93 -0.40 0.60 16 42 H 0.11 0.98 8.05 -51.93 -0.42 0.56 16 43 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 44 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 45 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 375.89 15.07 5.66 5.66 Total: -1.00 -34.42 375.89 -8.66 -43.07 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -6.44 Total: 2.54 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -2.88 Total: -0.81 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: -0.13 Total: -52.79 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.09 Total: -11.49 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.08 Total: -3.71 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.03 Total: 17.53 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.42 -8.66 -43.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968365696.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.024 kcal (2) G-P(sol) polarization free energy of solvation -34.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds