Wall clock time and date at job start Tue Mar 31 2020 22:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.46369 * 2 1 4 4 C 1.53044 * 109.46294 * 119.96126 * 2 1 3 5 5 C 1.52763 * 109.38418 * 181.25931 * 4 2 1 6 6 N 1.46929 * 109.00553 * 305.58543 * 5 4 2 7 7 C 1.36940 * 120.62778 * 233.58054 * 6 5 4 8 8 H 1.07996 * 119.99733 * 27.44937 * 7 6 5 9 9 C 1.38810 * 120.00055 * 207.71952 * 7 6 5 10 10 N 1.31618 * 119.99641 * 16.99717 * 9 7 6 11 11 Si 1.86794 * 120.00176 * 196.99896 * 9 7 6 12 12 H 1.48509 * 109.47042 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47288 * 119.99906 * 11 9 7 14 14 H 1.48498 * 109.46944 * 240.00280 * 11 9 7 15 15 C 1.46924 * 118.74051 * 53.31136 * 6 5 4 16 16 C 1.53041 * 109.45913 * 240.02643 * 2 1 3 17 17 H 1.09004 * 109.49914 * 298.57040 * 16 2 1 18 18 N 1.46496 * 109.52362 * 58.64459 * 16 2 1 19 19 C 1.34784 * 120.00391 * 204.85321 * 18 16 2 20 20 O 1.21277 * 119.99429 * 0.02562 * 19 18 16 21 21 C 1.50700 * 120.00190 * 179.97438 * 19 18 16 22 22 C 1.50705 * 109.46801 * 180.02562 * 21 19 18 23 23 C 1.38250 * 119.99765 * 264.72170 * 22 21 19 24 24 C 1.38221 * 120.06858 * 179.77228 * 23 22 21 25 25 C 1.38261 * 120.06692 * 0.50668 * 24 23 22 26 26 C 1.38372 * 120.00066 * 359.74989 * 25 24 23 27 27 F 1.35093 * 120.03544 * 180.02562 * 26 25 24 28 28 C 1.38365 * 119.99810 * 85.00624 * 22 21 19 29 29 F 1.35100 * 120.03551 * 359.94739 * 28 22 21 30 30 H 1.08998 * 109.47268 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46612 * 299.97149 * 1 2 3 32 32 H 1.08993 * 109.47362 * 59.97071 * 1 2 3 33 33 H 1.09001 * 109.49447 * 301.33080 * 4 2 1 34 34 H 1.08995 * 109.49779 * 61.40039 * 4 2 1 35 35 H 1.08996 * 109.50927 * 185.70091 * 5 4 2 36 36 H 1.08998 * 109.43451 * 65.41912 * 5 4 2 37 37 H 0.97004 * 119.99499 * 179.97438 * 10 9 7 38 38 H 1.09005 * 109.58644 * 66.42563 * 15 6 5 39 39 H 1.08994 * 109.58933 * 186.70992 * 15 6 5 40 40 H 0.97006 * 120.00078 * 24.85818 * 18 16 2 41 41 H 1.08997 * 109.47185 * 300.00161 * 21 19 18 42 42 H 1.09000 * 109.46876 * 60.00302 * 21 19 18 43 43 H 1.08005 * 119.97079 * 0.03332 * 23 22 21 44 44 H 1.07995 * 119.96980 * 180.23960 * 24 23 22 45 45 H 1.07997 * 119.99827 * 179.76741 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7206 1.2501 5 6 3.5672 -0.6922 1.2642 6 7 4.0678 -1.2489 0.0000 7 6 4.9757 -2.2741 0.0001 8 1 5.0081 -2.9665 0.8282 9 6 5.8581 -2.4198 -1.0614 10 7 6.0623 -1.4176 -1.8898 11 14 6.7558 -4.0383 -1.3144 12 1 6.3548 -4.9977 -0.2540 13 1 6.4055 -4.5959 -2.6453 14 1 8.2211 -3.8078 -1.2443 15 6 3.5713 -0.6888 -1.2643 16 6 2.0398 -0.7209 -1.2500 17 1 1.6977 -1.7558 -1.2381 18 7 1.5255 -0.0497 -2.4463 19 6 1.4000 -0.7332 -3.6012 20 8 1.7126 -1.9040 -3.6498 21 6 0.8704 -0.0428 -4.8316 22 6 0.8289 -1.0207 -5.9776 23 6 1.8803 -1.0809 -6.8733 24 6 1.8460 -1.9805 -7.9221 25 6 0.7553 -2.8147 -8.0837 26 6 -0.3010 -2.7532 -7.1920 27 9 -1.3668 -3.5683 -7.3489 28 6 -0.2640 -1.8541 -6.1366 29 9 -1.2940 -1.7926 -5.2644 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5134 0.8903 32 1 -0.3634 0.5142 -0.8896 33 1 1.6573 -0.2204 2.1398 34 1 1.6974 -1.7553 1.2388 35 1 3.9347 -1.2905 2.0979 36 1 3.9098 0.3370 1.3714 37 1 6.6792 -1.5193 -2.6314 38 1 3.9142 0.3407 -1.3675 39 1 3.9436 -1.2833 -2.0985 40 1 1.2752 0.8867 -2.4073 41 1 -0.1352 0.3290 -4.6352 42 1 1.5226 0.7917 -5.0891 43 1 2.7314 -0.4273 -6.7509 44 1 2.6699 -2.0289 -8.6186 45 1 0.7279 -3.5146 -8.9058 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968365696.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:22 Heat of formation + Delta-G solvation = -108.465242 kcal Electronic energy + Delta-G solvation = -30027.509034 eV Core-core repulsion = 25680.234238 eV Total energy + Delta-G solvation = -4347.274796 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.54739 -49.63903 -41.19436 -39.95278 -38.97351 -36.07827 -34.68849 -33.92598 -32.81721 -31.30085 -30.78634 -29.13260 -28.45309 -25.88474 -24.27941 -23.85803 -23.09477 -22.61989 -21.44596 -20.79726 -18.97488 -18.78356 -18.35835 -18.15107 -17.95984 -17.25408 -17.14755 -16.68634 -16.07249 -16.04615 -15.77951 -15.60346 -15.50003 -15.28021 -15.05108 -14.93694 -14.60388 -14.38402 -14.09059 -14.03850 -13.55391 -13.32121 -13.16153 -13.06731 -13.02519 -12.77157 -12.71626 -12.58399 -12.31749 -12.24972 -12.14695 -11.90997 -11.63827 -11.45941 -11.19914 -10.88444 -10.56051 -10.04075 -9.91377 -9.75876 -8.69146 -7.90383 -5.35252 -0.07551 -0.05587 1.39003 1.43437 1.51654 1.71115 2.12880 2.45552 2.54091 2.77926 3.24895 3.26219 3.43112 3.71646 3.73737 3.82319 3.90668 3.98213 4.04524 4.16178 4.18918 4.31412 4.47448 4.49682 4.60560 4.67001 4.72939 4.78230 4.85261 4.91561 4.96512 4.98411 5.11415 5.13739 5.17381 5.22081 5.27057 5.30993 5.45239 5.49517 5.53391 5.61759 5.75352 5.80871 6.36381 6.66431 7.12013 7.38775 7.84704 8.33307 9.14796 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010647 B = 0.003865 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.277515 B = 7242.303673 C = 8966.964791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.085 4.085 3 H 0.083 0.917 4 C -0.117 4.117 5 C 0.136 3.864 6 N -0.611 5.611 7 C -0.267 4.267 8 H 0.064 0.936 9 C -0.045 4.045 10 N -0.927 5.927 11 Si 0.957 3.043 12 H -0.267 1.267 13 H -0.297 1.297 14 H -0.283 1.283 15 C 0.180 3.820 16 C 0.141 3.859 17 H 0.041 0.959 18 N -0.705 5.705 19 C 0.505 3.495 20 O -0.585 6.585 21 C -0.095 4.095 22 C -0.083 4.083 23 C -0.093 4.093 24 C -0.092 4.092 25 C -0.124 4.124 26 C 0.041 3.959 27 F -0.142 7.142 28 C 0.052 3.948 29 F -0.142 7.142 30 H 0.037 0.963 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.045 0.955 35 H 0.053 0.947 36 H 0.024 0.976 37 H 0.248 0.752 38 H 0.003 0.997 39 H 0.045 0.955 40 H 0.415 0.585 41 H 0.129 0.871 42 H 0.148 0.852 43 H 0.160 0.840 44 H 0.176 0.824 45 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.611 7.979 -9.742 18.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.104 4.104 3 H 0.101 0.899 4 C -0.157 4.157 5 C 0.012 3.988 6 N -0.334 5.334 7 C -0.397 4.397 8 H 0.082 0.918 9 C -0.241 4.241 10 N -0.573 5.573 11 Si 0.786 3.214 12 H -0.192 1.192 13 H -0.224 1.224 14 H -0.210 1.210 15 C 0.053 3.947 16 C 0.034 3.966 17 H 0.060 0.940 18 N -0.357 5.357 19 C 0.293 3.707 20 O -0.464 6.464 21 C -0.134 4.134 22 C -0.084 4.084 23 C -0.111 4.111 24 C -0.110 4.110 25 C -0.142 4.142 26 C 0.021 3.979 27 F -0.121 7.121 28 C 0.032 3.968 29 F -0.120 7.120 30 H 0.056 0.944 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.042 0.958 37 H 0.057 0.943 38 H 0.021 0.979 39 H 0.063 0.937 40 H 0.252 0.748 41 H 0.147 0.853 42 H 0.166 0.834 43 H 0.177 0.823 44 H 0.194 0.806 45 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -13.368 7.128 -9.824 18.056 hybrid contribution 0.251 -0.957 0.037 0.990 sum -13.117 6.171 -9.788 17.491 Atomic orbital electron populations 1.21769 0.93176 1.01375 1.02920 1.21263 0.96756 0.99502 0.92838 0.89865 1.21907 0.95856 1.00062 0.97833 1.21073 0.93492 0.96278 0.88005 1.44244 1.48054 1.39989 1.01154 1.19510 1.09714 1.04039 1.06419 0.91787 1.25702 0.98449 1.00127 0.99846 1.70156 1.38263 1.30535 1.18320 0.85357 0.78112 0.80581 0.77387 1.19171 1.22419 1.20965 1.20798 0.89617 0.95131 0.89159 1.21449 0.94906 0.95554 0.84697 0.94021 1.45824 1.65417 1.15025 1.09431 1.21102 0.77374 0.86844 0.85411 1.90752 1.51322 1.19007 1.85330 1.20705 1.06229 0.97998 0.88471 1.19507 0.93262 0.97721 0.97918 1.21445 0.97014 0.99315 0.93330 1.21509 0.98053 0.93331 0.98070 1.21453 0.91896 1.01471 0.99400 1.17990 0.87891 0.93585 0.98468 1.91475 1.54405 1.70813 1.95380 1.17820 0.87989 1.00529 0.90445 1.91452 1.56961 1.95610 1.68002 0.94392 0.90407 0.91575 0.88586 0.93602 0.92875 0.95846 0.94257 0.97914 0.93657 0.74802 0.85306 0.83413 0.82270 0.80647 0.81097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.02 71.98 0.65 -2.44 16 2 C -0.08 -2.49 2.27 -10.77 -0.02 -2.52 16 3 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 4 C -0.12 -3.74 5.35 30.53 0.16 -3.58 16 5 C 0.14 5.57 6.49 86.22 0.56 6.13 16 6 N -0.61 -31.67 3.00 -699.93 -2.10 -33.77 16 7 C -0.27 -15.43 9.58 84.03 0.81 -14.62 16 8 H 0.06 3.63 7.88 -2.91 -0.02 3.61 16 9 C -0.05 -2.66 4.92 84.86 0.42 -2.24 16 10 N -0.93 -56.65 11.18 21.65 0.24 -56.41 16 11 Si 0.96 47.58 29.59 68.60 2.03 49.61 16 12 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 13 H -0.30 -15.08 7.11 99.48 0.71 -14.38 16 14 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 15 C 0.18 8.92 4.89 86.36 0.42 9.35 16 16 C 0.14 5.43 2.06 45.07 0.09 5.52 16 17 H 0.04 1.95 7.58 -2.39 -0.02 1.94 16 18 N -0.70 -21.40 4.37 -442.16 -1.93 -23.33 16 19 C 0.51 16.95 7.79 87.66 0.68 17.63 16 20 O -0.58 -26.94 15.70 -3.02 -0.05 -26.98 16 21 C -0.09 -2.08 5.60 29.10 0.16 -1.91 16 22 C -0.08 -2.10 4.38 -19.83 -0.09 -2.19 16 23 C -0.09 -1.96 9.68 22.27 0.22 -1.74 16 24 C -0.09 -1.62 10.04 22.27 0.22 -1.40 16 25 C -0.12 -2.45 10.02 22.31 0.22 -2.23 16 26 C 0.04 1.09 7.31 22.41 0.16 1.25 16 27 F -0.14 -4.06 17.18 44.97 0.77 -3.28 16 28 C 0.05 1.51 7.25 22.41 0.16 1.68 16 29 F -0.14 -4.47 16.48 44.97 0.74 -3.73 16 30 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.07 1.30 7.36 -2.39 -0.02 1.28 16 33 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.05 2.15 7.93 -2.39 -0.02 2.13 16 36 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 38 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 39 H 0.04 2.70 6.04 -2.39 -0.01 2.69 16 40 H 0.41 8.76 8.30 -92.70 -0.77 7.99 16 41 H 0.13 2.19 7.79 -2.39 -0.02 2.17 16 42 H 0.15 2.14 8.05 -2.39 -0.02 2.12 16 43 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 44 H 0.18 1.82 8.06 -2.91 -0.02 1.80 16 45 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -81.18 375.89 4.78 -76.40 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.24 Total: 14.82 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 4.83 Total: 6.68 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -3.79 Total: -113.51 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.05 Total: -26.98 kcal Atomic # 9 Polarization: -8.53 SS G_CDS: 1.51 Total: -7.01 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.03 Total: 49.61 kcal Total: -81.18 4.78 -76.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968365696.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.066 kcal (2) G-P(sol) polarization free energy of solvation -81.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds