Wall clock time and date at job start Tue Mar 31 2020 22:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08994 * 109.45584 * 2 1 4 4 C 1.53040 * 109.45772 * 240.04489 * 2 1 3 5 5 C 1.53190 * 109.31339 * 178.61382 * 4 2 1 6 6 N 1.46926 * 108.77346 * 54.63177 * 5 4 2 7 7 C 1.36946 * 120.62618 * 126.41554 * 6 5 4 8 8 H 1.08001 * 119.99836 * 331.82218 * 7 6 5 9 9 C 1.38812 * 119.99479 * 151.82453 * 7 6 5 10 10 N 1.31613 * 120.00454 * 343.07277 * 9 7 6 11 11 Si 1.86807 * 119.99638 * 163.07774 * 9 7 6 12 12 H 1.48497 * 109.47440 * 59.99429 * 11 9 7 13 13 H 1.48494 * 109.47156 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46966 * 299.99532 * 11 9 7 15 15 C 1.46925 * 118.74391 * 306.39668 * 6 5 4 16 16 C 1.53037 * 109.45917 * 119.97783 * 2 1 3 17 17 H 1.08999 * 109.52652 * 301.35384 * 16 2 1 18 18 N 1.46502 * 109.49775 * 61.43610 * 16 2 1 19 19 C 1.34783 * 119.99794 * 204.83652 * 18 16 2 20 20 O 1.21284 * 119.99897 * 0.02562 * 19 18 16 21 21 C 1.50700 * 119.99972 * 179.97438 * 19 18 16 22 22 C 1.50697 * 109.46778 * 179.97438 * 21 19 18 23 23 C 1.38256 * 120.00459 * 264.72461 * 22 21 19 24 24 C 1.38211 * 120.07437 * 179.72507 * 23 22 21 25 25 C 1.38257 * 120.06758 * 0.55412 * 24 23 22 26 26 C 1.38364 * 120.00065 * 359.72485 * 25 24 23 27 27 F 1.35102 * 120.03741 * 180.02562 * 26 25 24 28 28 C 1.38374 * 119.99942 * 85.00550 * 22 21 19 29 29 F 1.35099 * 120.03387 * 0.02562 * 28 22 21 30 30 H 1.08998 * 109.46696 * 300.02455 * 1 2 3 31 31 H 1.08997 * 109.47259 * 60.02352 * 1 2 3 32 32 H 1.08998 * 109.47186 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.50021 * 58.66337 * 4 2 1 34 34 H 1.09005 * 109.50031 * 298.56726 * 4 2 1 35 35 H 1.09000 * 109.58553 * 294.84927 * 5 4 2 36 36 H 1.09000 * 109.58726 * 174.42428 * 5 4 2 37 37 H 0.97003 * 120.00156 * 180.02562 * 10 9 7 38 38 H 1.09002 * 109.58585 * 173.39518 * 15 6 5 39 39 H 1.08998 * 109.58165 * 293.82230 * 15 6 5 40 40 H 0.96993 * 120.00499 * 24.83386 * 18 16 2 41 41 H 1.08998 * 109.47276 * 300.00152 * 21 19 18 42 42 H 1.09002 * 109.46790 * 59.99931 * 21 19 18 43 43 H 1.08009 * 119.96196 * 0.02562 * 23 22 21 44 44 H 1.08002 * 119.96247 * 180.25717 * 24 23 22 45 45 H 1.08000 * 119.99920 * 179.70451 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7205 -1.2502 5 6 3.5714 -0.6884 -1.2645 6 7 4.0679 -1.2488 -0.0003 7 6 4.9765 -2.2734 -0.0006 8 1 5.0044 -2.9702 -0.8253 9 6 5.8615 -2.4163 1.0592 10 7 6.0660 -1.4128 1.8859 11 14 6.7625 -4.0331 1.3120 12 1 7.5862 -4.3335 0.1136 13 1 7.6426 -3.9283 2.5035 14 1 5.7751 -5.1227 1.5198 15 6 3.5714 -0.6889 1.2641 16 6 2.0399 -0.7210 1.2499 17 1 1.6573 -0.2217 2.1401 18 7 1.5802 -2.1119 1.2338 19 6 1.4548 -2.7937 2.3897 20 8 1.7221 -2.2554 3.4432 21 6 0.9814 -4.2243 2.3732 22 6 0.9292 -4.7523 3.7836 23 6 1.9984 -5.4641 4.2954 24 6 1.9544 -5.9442 5.5907 25 6 0.8365 -5.7236 6.3736 26 6 -0.2375 -5.0166 5.8626 27 9 -1.3301 -4.8001 6.6272 28 6 -0.1911 -4.5299 4.5647 29 9 -1.2388 -3.8398 4.0634 30 1 -0.3632 0.5142 0.8898 31 1 -0.3633 0.5134 -0.8902 32 1 -0.3633 -1.0276 0.0005 33 1 1.6572 -0.2203 -2.1399 34 1 1.6978 -1.7554 -1.2387 35 1 3.9143 0.3412 -1.3674 36 1 3.9416 -1.2841 -2.0988 37 1 6.6848 -1.5126 2.6262 38 1 3.9418 -1.2850 2.0981 39 1 3.9143 0.3406 1.3673 40 1 1.3661 -2.5423 0.3913 41 1 -0.0131 -4.2728 1.9296 42 1 1.6716 -4.8286 1.7846 43 1 2.8709 -5.6410 3.6838 44 1 2.7923 -6.4964 5.9900 45 1 0.8014 -6.1033 7.3841 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968365698.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:25 Heat of formation + Delta-G solvation = -85.855390 kcal Electronic energy + Delta-G solvation = -30566.817074 eV Core-core repulsion = 26220.522714 eV Total energy + Delta-G solvation = -4346.294359 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.44350 -48.52348 -39.84301 -38.85358 -37.42287 -34.13766 -32.92635 -32.67925 -31.03612 -30.31842 -29.43180 -27.77311 -27.04014 -24.08756 -22.86652 -22.78079 -21.96786 -21.09559 -20.28477 -18.67480 -17.90298 -17.31179 -17.06815 -16.91947 -16.59564 -16.11952 -15.25157 -14.98813 -14.90963 -14.87061 -14.48492 -14.34036 -13.98513 -13.82856 -13.64674 -13.39578 -13.32028 -13.01800 -12.86354 -12.60433 -12.15952 -12.07259 -11.92132 -11.71806 -11.56816 -11.37014 -11.28389 -11.04701 -10.93340 -10.75586 -10.52349 -10.25926 -9.94170 -9.71480 -9.51012 -9.41156 -8.87523 -8.74066 -8.47572 -8.33972 -6.65571 -5.78276 -3.21730 0.92694 0.93238 3.17199 3.26804 3.33637 3.39344 3.41982 3.75655 3.85367 4.31696 4.42858 4.47160 4.67006 4.89211 5.04001 5.17013 5.23945 5.24725 5.34060 5.34968 5.41907 5.47845 5.55133 5.71164 5.78653 5.88322 5.92916 5.93397 6.01326 6.07913 6.15135 6.23857 6.29992 6.37048 6.44298 6.55080 6.66687 6.71682 6.74662 6.88380 7.00728 7.38624 7.66682 7.78700 8.11098 8.45465 8.80914 9.20090 9.84346 10.40883 11.29524 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010777 B = 0.004541 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.554675 B = 6163.888776 C = 8151.723500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.076 0.924 4 C -0.128 4.128 5 C 0.142 3.858 6 N -0.587 5.587 7 C -0.255 4.255 8 H 0.063 0.937 9 C 0.007 3.993 10 N -0.897 5.897 11 Si 0.897 3.103 12 H -0.283 1.283 13 H -0.291 1.291 14 H -0.285 1.285 15 C 0.161 3.839 16 C 0.127 3.873 17 H 0.074 0.926 18 N -0.697 5.697 19 C 0.517 3.483 20 O -0.540 6.540 21 C -0.107 4.107 22 C -0.062 4.062 23 C -0.086 4.086 24 C -0.099 4.099 25 C -0.130 4.130 26 C 0.063 3.937 27 F -0.133 7.133 28 C 0.081 3.919 29 F -0.128 7.128 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.017 0.983 36 H 0.053 0.947 37 H 0.255 0.745 38 H 0.097 0.903 39 H 0.024 0.976 40 H 0.395 0.605 41 H 0.102 0.898 42 H 0.113 0.887 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.456 -7.033 1.401 14.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.095 0.905 4 C -0.168 4.168 5 C 0.016 3.984 6 N -0.310 5.310 7 C -0.385 4.385 8 H 0.081 0.919 9 C -0.192 4.192 10 N -0.541 5.541 11 Si 0.727 3.273 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.211 1.211 15 C 0.035 3.965 16 C 0.021 3.979 17 H 0.092 0.908 18 N -0.347 5.347 19 C 0.302 3.698 20 O -0.417 6.417 21 C -0.147 4.147 22 C -0.063 4.063 23 C -0.104 4.104 24 C -0.117 4.117 25 C -0.149 4.149 26 C 0.043 3.957 27 F -0.111 7.111 28 C 0.061 3.939 29 F -0.106 7.106 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.035 0.965 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.115 0.885 39 H 0.042 0.958 40 H 0.229 0.771 41 H 0.120 0.880 42 H 0.131 0.869 43 H 0.159 0.841 44 H 0.158 0.842 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.206 -6.573 2.301 14.053 hybrid contribution 0.101 -0.766 -0.175 0.792 sum -12.106 -7.339 2.126 14.315 Atomic orbital electron populations 1.21846 0.95997 1.01358 1.00933 1.21311 0.94586 0.99872 0.95533 0.90520 1.22076 0.99202 0.99404 0.96077 1.20933 0.90712 0.96514 0.90276 1.43974 1.48260 1.39603 0.99141 1.19038 1.09830 1.03046 1.06561 0.91943 1.25019 0.97118 0.97154 0.99924 1.69989 1.37138 1.28976 1.17953 0.86455 0.79425 0.84012 0.77367 1.20977 1.21644 1.21120 1.21188 0.86736 0.97714 0.90907 1.21777 0.98835 0.80501 0.96814 0.90756 1.45764 1.66925 1.14015 1.08044 1.20028 0.78110 0.87256 0.84406 1.90707 1.50319 1.69854 1.30814 1.20656 1.04557 0.95660 0.93846 1.19292 0.92631 0.98491 0.95921 1.21105 0.97364 0.96009 0.95914 1.21043 0.97553 0.99549 0.93550 1.21033 0.92509 0.99955 1.01432 1.17600 0.86170 1.03386 0.88541 1.91506 1.51744 1.93338 1.74552 1.17439 0.86692 0.98048 0.91767 1.91499 1.55001 1.76921 1.87202 0.93138 0.93186 0.93043 0.92832 0.92704 0.96493 0.92846 0.93526 0.88516 0.95833 0.77061 0.87962 0.86888 0.84075 0.84205 0.83933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.05 37.16 0.34 -1.51 16 2 C -0.09 -1.45 2.48 -90.58 -0.22 -1.67 16 3 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 4 C -0.13 -1.96 5.20 -26.61 -0.14 -2.10 16 5 C 0.14 2.76 6.52 -3.71 -0.02 2.73 16 6 N -0.59 -13.80 2.91 -172.32 -0.50 -14.30 16 7 C -0.26 -6.66 9.58 -15.06 -0.14 -6.80 16 8 H 0.06 1.59 7.89 -52.49 -0.41 1.18 16 9 C 0.01 0.20 4.92 -17.43 -0.09 0.11 16 10 N -0.90 -25.97 11.20 55.49 0.62 -25.34 16 11 Si 0.90 21.13 29.59 -169.99 -5.03 16.10 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 C 0.16 3.79 4.90 -3.71 -0.02 3.77 16 16 C 0.13 2.37 2.24 -67.81 -0.15 2.22 16 17 H 0.07 1.48 7.58 -51.93 -0.39 1.09 16 18 N -0.70 -11.93 4.25 -53.69 -0.23 -12.15 16 19 C 0.52 9.37 7.79 -10.98 -0.09 9.28 16 20 O -0.54 -12.00 15.70 5.55 0.09 -11.91 16 21 C -0.11 -1.49 5.60 -29.04 -0.16 -1.65 16 22 C -0.06 -0.90 4.38 -104.57 -0.46 -1.35 16 23 C -0.09 -1.12 9.68 -39.58 -0.38 -1.51 16 24 C -0.10 -1.10 10.04 -39.58 -0.40 -1.49 16 25 C -0.13 -1.48 10.02 -39.53 -0.40 -1.87 16 26 C 0.06 0.87 7.31 -39.37 -0.29 0.59 16 27 F -0.13 -1.89 17.18 2.25 0.04 -1.85 16 28 C 0.08 1.22 7.25 -39.36 -0.29 0.93 16 29 F -0.13 -2.03 16.48 2.25 0.04 -1.99 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.64 7.54 -51.93 -0.39 0.25 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.81 6.40 -51.93 -0.33 0.48 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 37 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.10 2.68 6.06 -51.93 -0.31 2.36 16 39 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.39 5.92 6.64 -40.82 -0.27 5.64 16 41 H 0.10 1.17 7.79 -51.93 -0.40 0.77 16 42 H 0.11 1.37 8.05 -51.93 -0.42 0.96 16 43 H 0.14 1.75 8.06 -52.48 -0.42 1.33 16 44 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 45 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 372.80 15.07 5.62 5.62 Total: -1.00 -31.83 372.80 -8.56 -40.39 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -6.29 Total: 5.77 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -2.91 Total: -0.33 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: -0.11 Total: -51.79 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.09 Total: -11.91 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.08 Total: -3.84 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.83 -8.56 -40.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968365698.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.465 kcal (2) G-P(sol) polarization free energy of solvation -31.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds