Wall clock time and date at job start Tue Mar 31 2020 22:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.45338 * 2 1 4 4 C 1.53050 * 109.45700 * 119.96449 * 2 1 3 5 5 C 1.53193 * 109.31265 * 181.38357 * 4 2 1 6 6 N 1.46924 * 108.77225 * 305.36352 * 5 4 2 7 7 C 1.36936 * 120.63011 * 233.58133 * 6 5 4 8 8 H 1.07998 * 119.99987 * 151.85177 * 7 6 5 9 9 C 1.38816 * 120.00184 * 331.85909 * 7 6 5 10 10 N 1.31612 * 119.99500 * 343.06988 * 9 7 6 11 11 Si 1.86794 * 120.00031 * 163.07164 * 9 7 6 12 12 H 1.48504 * 109.47187 * 59.99600 * 11 9 7 13 13 H 1.48497 * 109.47306 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47353 * 299.99978 * 11 9 7 15 15 C 1.46921 * 118.74150 * 53.61372 * 6 5 4 16 16 C 1.53041 * 109.45950 * 240.02771 * 2 1 3 17 17 H 1.09004 * 109.52063 * 58.65478 * 16 2 1 18 18 N 1.46499 * 109.49982 * 298.57148 * 16 2 1 19 19 C 1.34776 * 119.99900 * 155.16426 * 18 16 2 20 20 O 1.21277 * 120.00172 * 359.97438 * 19 18 16 21 21 C 1.50701 * 119.99857 * 179.97438 * 19 18 16 22 22 C 1.50704 * 109.46910 * 179.97438 * 21 19 18 23 23 C 1.38252 * 120.00014 * 100.00449 * 22 21 19 24 24 C 1.38211 * 120.07163 * 179.97438 * 23 22 21 25 25 C 1.38257 * 120.07254 * 0.03854 * 24 23 22 26 26 C 1.38376 * 119.99549 * 359.97438 * 25 24 23 27 27 F 1.35097 * 120.03241 * 180.02562 * 26 25 24 28 28 C 1.38375 * 119.99796 * 279.72185 * 22 21 19 29 29 F 1.35098 * 120.03549 * 0.02688 * 28 22 21 30 30 H 1.09005 * 109.47414 * 300.04071 * 1 2 3 31 31 H 1.09005 * 109.46886 * 60.03629 * 1 2 3 32 32 H 1.08996 * 109.47814 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.49273 * 61.43101 * 4 2 1 34 34 H 1.09000 * 109.49444 * 301.33777 * 4 2 1 35 35 H 1.09000 * 109.58499 * 65.15349 * 5 4 2 36 36 H 1.08997 * 109.58210 * 185.43379 * 5 4 2 37 37 H 0.97002 * 119.99590 * 180.02562 * 10 9 7 38 38 H 1.09007 * 109.58990 * 66.17250 * 15 6 5 39 39 H 1.09002 * 109.59308 * 186.45549 * 15 6 5 40 40 H 0.97004 * 120.00173 * 335.15697 * 18 16 2 41 41 H 1.08998 * 109.46971 * 299.99600 * 21 19 18 42 42 H 1.09005 * 109.47031 * 59.99950 * 21 19 18 43 43 H 1.07998 * 119.96338 * 359.96807 * 23 22 21 44 44 H 1.07999 * 119.96325 * 180.02562 * 24 23 22 45 45 H 1.07988 * 120.00411 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7208 1.2502 5 6 3.5713 -0.6887 1.2644 6 7 4.0677 -1.2490 0.0002 7 6 4.9763 -2.2736 0.0003 8 1 5.0042 -2.9705 -0.8243 9 6 5.8612 -2.4165 1.0602 10 7 6.0656 -1.4128 1.8866 11 14 6.7619 -4.0332 1.3134 12 1 7.5858 -4.3338 0.1150 13 1 7.6419 -3.9283 2.5049 14 1 5.7746 -5.1227 1.5211 15 6 3.5714 -0.6888 -1.2641 16 6 2.0398 -0.7209 -1.2500 17 1 1.6572 -0.2213 -2.1401 18 7 1.5800 -2.1118 -1.2342 19 6 1.4546 -2.7933 -2.3901 20 8 1.7220 -2.2550 -3.4435 21 6 0.9822 -4.2242 -2.3737 22 6 0.9286 -4.7517 -3.7845 23 6 1.9539 -5.5449 -4.2652 24 6 1.9060 -6.0298 -5.5586 25 6 0.8332 -5.7222 -6.3746 26 6 -0.1944 -4.9283 -5.8965 27 9 -1.2433 -4.6277 -6.6930 28 6 -0.1495 -4.4469 -4.5966 29 9 -1.1542 -3.6762 -4.1258 30 1 -0.3634 0.5145 0.8896 31 1 -0.3633 0.5133 -0.8904 32 1 -0.3634 -1.0276 0.0005 33 1 1.6976 -1.7556 1.2384 34 1 1.6571 -0.2207 2.1399 35 1 3.9142 0.3408 1.3675 36 1 3.9414 -1.2825 2.1001 37 1 6.6843 -1.5125 2.6270 38 1 3.9144 0.3407 -1.3672 39 1 3.9437 -1.2832 -2.0984 40 1 1.3659 -2.5423 -0.3917 41 1 1.6731 -4.8282 -1.7856 42 1 -0.0122 -4.2735 -1.9298 43 1 2.7931 -5.7857 -3.6295 44 1 2.7077 -6.6496 -5.9322 45 1 0.7968 -6.1020 -7.3848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968365700.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:28 Heat of formation + Delta-G solvation = -86.617473 kcal Electronic energy + Delta-G solvation = -30203.124861 eV Core-core repulsion = 25856.797456 eV Total energy + Delta-G solvation = -4346.327406 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.51826 -48.59727 -39.98405 -38.95023 -37.50748 -34.23667 -33.03438 -32.62470 -31.10278 -30.42094 -29.51049 -27.92457 -27.00899 -24.10523 -22.95547 -22.84309 -22.02101 -21.12249 -20.38974 -18.71718 -17.98253 -17.42122 -17.18942 -16.98613 -16.58956 -16.17664 -15.39423 -15.01012 -14.98567 -14.84161 -14.77637 -14.44515 -14.00875 -13.87605 -13.69933 -13.49022 -13.36656 -13.05518 -12.93586 -12.57082 -12.26653 -12.15671 -11.98869 -11.80564 -11.62273 -11.41274 -11.36701 -11.15719 -10.84958 -10.77955 -10.40143 -10.26797 -9.99622 -9.68479 -9.57995 -9.48945 -8.99154 -8.83369 -8.65335 -8.38827 -6.66911 -5.81746 -3.23927 0.82266 0.83504 2.99340 3.15485 3.33852 3.40087 3.40666 3.65967 3.70594 4.23070 4.32740 4.45934 4.55979 4.78961 4.93103 5.06124 5.16714 5.24519 5.28564 5.33412 5.37145 5.40210 5.54490 5.61311 5.68712 5.82520 5.89837 5.94171 5.96189 6.02780 6.11873 6.19080 6.23289 6.40361 6.41903 6.56975 6.61692 6.64093 6.79216 6.83232 7.07753 7.29780 7.61063 7.76289 7.94989 8.42138 8.62201 9.18758 9.81772 10.39106 11.26538 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012533 B = 0.003682 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.575378 B = 7603.641391 C = 9313.639096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.077 0.923 4 C -0.136 4.136 5 C 0.169 3.831 6 N -0.586 5.586 7 C -0.248 4.248 8 H 0.062 0.938 9 C 0.003 3.997 10 N -0.903 5.903 11 Si 0.900 3.100 12 H -0.283 1.283 13 H -0.291 1.291 14 H -0.285 1.285 15 C 0.135 3.865 16 C 0.136 3.864 17 H 0.077 0.923 18 N -0.697 5.697 19 C 0.517 3.483 20 O -0.545 6.545 21 C -0.108 4.108 22 C -0.064 4.064 23 C -0.088 4.088 24 C -0.100 4.100 25 C -0.130 4.130 26 C 0.064 3.936 27 F -0.132 7.132 28 C 0.084 3.916 29 F -0.127 7.127 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.018 0.982 36 H 0.087 0.913 37 H 0.254 0.746 38 H 0.025 0.975 39 H 0.059 0.941 40 H 0.399 0.601 41 H 0.114 0.886 42 H 0.104 0.896 43 H 0.142 0.858 44 H 0.140 0.860 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.697 -7.261 -8.540 16.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.095 0.905 4 C -0.176 4.176 5 C 0.043 3.957 6 N -0.309 5.309 7 C -0.377 4.377 8 H 0.080 0.920 9 C -0.196 4.196 10 N -0.547 5.547 11 Si 0.730 3.270 12 H -0.210 1.210 13 H -0.217 1.217 14 H -0.211 1.211 15 C 0.008 3.992 16 C 0.030 3.970 17 H 0.095 0.905 18 N -0.348 5.348 19 C 0.302 3.698 20 O -0.423 6.423 21 C -0.147 4.147 22 C -0.066 4.066 23 C -0.107 4.107 24 C -0.118 4.118 25 C -0.149 4.149 26 C 0.044 3.956 27 F -0.111 7.111 28 C 0.064 3.936 29 F -0.105 7.105 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.036 0.964 36 H 0.106 0.894 37 H 0.064 0.936 38 H 0.042 0.958 39 H 0.077 0.923 40 H 0.235 0.765 41 H 0.133 0.867 42 H 0.122 0.878 43 H 0.160 0.840 44 H 0.158 0.842 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.448 -6.800 -9.147 16.878 hybrid contribution 0.098 -0.733 0.566 0.931 sum -12.351 -7.533 -8.581 16.820 Atomic orbital electron populations 1.21847 0.95995 1.01338 1.00954 1.21317 0.94578 0.99875 0.95520 0.90476 1.22261 1.00919 0.98883 0.95501 1.20796 0.87165 0.97355 0.90388 1.43983 1.48200 1.39582 0.99139 1.19079 1.09635 1.02734 1.06299 0.92020 1.25025 0.97142 0.97305 1.00081 1.70016 1.37508 1.28961 1.18222 0.86406 0.79379 0.83838 0.77352 1.20958 1.21682 1.21125 1.21286 0.90390 0.96959 0.90593 1.21544 0.97155 0.80805 0.97493 0.90540 1.45844 1.66658 1.13961 1.08348 1.20104 0.78021 0.87404 0.84292 1.90692 1.50768 1.69971 1.30845 1.20662 1.04788 0.95400 0.93889 1.19298 0.93245 0.98315 0.95695 1.21084 0.97390 0.96037 0.96143 1.21039 0.97677 0.99711 0.93361 1.21051 0.93364 0.98962 1.01531 1.17626 0.87866 1.02210 0.87947 1.91511 1.55025 1.91877 1.72658 1.17452 0.88229 0.96080 0.91884 1.91509 1.58073 1.72581 1.88342 0.93012 0.93275 0.93075 0.93033 0.92918 0.96407 0.89444 0.93620 0.95756 0.92275 0.76530 0.86746 0.87779 0.84023 0.84177 0.83909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.05 37.16 0.34 -1.51 16 2 C -0.09 -1.45 2.48 -90.57 -0.22 -1.67 16 3 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 4 C -0.14 -2.30 5.20 -26.61 -0.14 -2.44 16 5 C 0.17 3.74 5.30 -3.71 -0.02 3.72 16 6 N -0.59 -13.81 2.91 -172.32 -0.50 -14.31 16 7 C -0.25 -6.48 9.58 -15.06 -0.14 -6.63 16 8 H 0.06 1.62 7.88 -52.49 -0.41 1.21 16 9 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 10 N -0.90 -25.33 11.19 55.49 0.62 -24.71 16 11 Si 0.90 20.91 29.59 -169.99 -5.03 15.88 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 C 0.14 2.84 6.12 -3.71 -0.02 2.82 16 16 C 0.14 2.34 2.24 -67.81 -0.15 2.19 16 17 H 0.08 1.36 7.58 -51.93 -0.39 0.96 16 18 N -0.70 -11.04 4.25 -53.69 -0.23 -11.27 16 19 C 0.52 8.38 7.78 -10.99 -0.09 8.29 16 20 O -0.54 -10.78 15.62 5.56 0.09 -10.70 16 21 C -0.11 -1.32 5.56 -29.03 -0.16 -1.48 16 22 C -0.06 -0.82 4.42 -104.56 -0.46 -1.28 16 23 C -0.09 -0.96 9.67 -39.59 -0.38 -1.34 16 24 C -0.10 -0.92 10.04 -39.58 -0.40 -1.32 16 25 C -0.13 -1.29 10.02 -39.52 -0.40 -1.69 16 26 C 0.06 0.81 7.31 -39.36 -0.29 0.52 16 27 F -0.13 -1.76 17.18 2.25 0.04 -1.72 16 28 C 0.08 1.16 7.14 -39.36 -0.28 0.88 16 29 F -0.13 -1.91 16.57 2.25 0.04 -1.87 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.63 7.54 -51.93 -0.39 0.24 16 33 H 0.05 0.84 6.40 -51.93 -0.33 0.51 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.09 2.19 6.07 -51.93 -0.31 1.87 16 37 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 1.34 7.93 -51.93 -0.41 0.93 16 40 H 0.40 5.80 6.64 -40.82 -0.27 5.53 16 41 H 0.11 1.20 8.00 -51.93 -0.42 0.78 16 42 H 0.10 1.08 7.94 -51.93 -0.41 0.67 16 43 H 0.14 1.32 8.04 -52.49 -0.42 0.90 16 44 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 372.77 15.07 5.62 5.62 Total: -1.00 -31.22 372.77 -8.56 -39.78 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -6.30 Total: 4.25 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -2.91 Total: -0.95 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: -0.11 Total: -50.29 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.08 Total: -3.60 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.22 -8.56 -39.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968365700.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.838 kcal (2) G-P(sol) polarization free energy of solvation -31.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds