Wall clock time and date at job start Tue Mar 31 2020 22:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.45338 * 2 1 4 4 C 1.53050 * 109.45700 * 119.96449 * 2 1 3 5 5 C 1.53193 * 109.31265 * 181.38357 * 4 2 1 6 6 N 1.46924 * 108.77225 * 305.36352 * 5 4 2 7 7 C 1.36936 * 120.63011 * 233.58133 * 6 5 4 8 8 H 1.07998 * 119.99987 * 151.85177 * 7 6 5 9 9 C 1.38816 * 120.00184 * 331.85909 * 7 6 5 10 10 N 1.31612 * 119.99500 * 343.06988 * 9 7 6 11 11 Si 1.86794 * 120.00031 * 163.07164 * 9 7 6 12 12 H 1.48504 * 109.47187 * 59.99600 * 11 9 7 13 13 H 1.48497 * 109.47306 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47353 * 299.99978 * 11 9 7 15 15 C 1.46921 * 118.74150 * 53.61372 * 6 5 4 16 16 C 1.53041 * 109.45950 * 240.02771 * 2 1 3 17 17 H 1.09004 * 109.52063 * 58.65478 * 16 2 1 18 18 N 1.46499 * 109.49982 * 298.57148 * 16 2 1 19 19 C 1.34776 * 119.99900 * 155.16426 * 18 16 2 20 20 O 1.21277 * 120.00172 * 359.97438 * 19 18 16 21 21 C 1.50701 * 119.99857 * 179.97438 * 19 18 16 22 22 C 1.50704 * 109.46910 * 179.97438 * 21 19 18 23 23 C 1.38252 * 120.00014 * 100.00449 * 22 21 19 24 24 C 1.38211 * 120.07163 * 179.97438 * 23 22 21 25 25 C 1.38257 * 120.07254 * 0.03854 * 24 23 22 26 26 C 1.38376 * 119.99549 * 359.97438 * 25 24 23 27 27 F 1.35097 * 120.03241 * 180.02562 * 26 25 24 28 28 C 1.38375 * 119.99796 * 279.72185 * 22 21 19 29 29 F 1.35098 * 120.03549 * 0.02688 * 28 22 21 30 30 H 1.09005 * 109.47414 * 300.04071 * 1 2 3 31 31 H 1.09005 * 109.46886 * 60.03629 * 1 2 3 32 32 H 1.08996 * 109.47814 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.49273 * 61.43101 * 4 2 1 34 34 H 1.09000 * 109.49444 * 301.33777 * 4 2 1 35 35 H 1.09000 * 109.58499 * 65.15349 * 5 4 2 36 36 H 1.08997 * 109.58210 * 185.43379 * 5 4 2 37 37 H 0.97002 * 119.99590 * 180.02562 * 10 9 7 38 38 H 1.09007 * 109.58990 * 66.17250 * 15 6 5 39 39 H 1.09002 * 109.59308 * 186.45549 * 15 6 5 40 40 H 0.97004 * 120.00173 * 335.15697 * 18 16 2 41 41 H 1.08998 * 109.46971 * 299.99600 * 21 19 18 42 42 H 1.09005 * 109.47031 * 59.99950 * 21 19 18 43 43 H 1.07998 * 119.96338 * 359.96807 * 23 22 21 44 44 H 1.07999 * 119.96325 * 180.02562 * 24 23 22 45 45 H 1.07988 * 120.00411 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7208 1.2502 5 6 3.5713 -0.6887 1.2644 6 7 4.0677 -1.2490 0.0002 7 6 4.9763 -2.2736 0.0003 8 1 5.0042 -2.9705 -0.8243 9 6 5.8612 -2.4165 1.0602 10 7 6.0656 -1.4128 1.8866 11 14 6.7619 -4.0332 1.3134 12 1 7.5858 -4.3338 0.1150 13 1 7.6419 -3.9283 2.5049 14 1 5.7746 -5.1227 1.5211 15 6 3.5714 -0.6888 -1.2641 16 6 2.0398 -0.7209 -1.2500 17 1 1.6572 -0.2213 -2.1401 18 7 1.5800 -2.1118 -1.2342 19 6 1.4546 -2.7933 -2.3901 20 8 1.7220 -2.2550 -3.4435 21 6 0.9822 -4.2242 -2.3737 22 6 0.9286 -4.7517 -3.7845 23 6 1.9539 -5.5449 -4.2652 24 6 1.9060 -6.0298 -5.5586 25 6 0.8332 -5.7222 -6.3746 26 6 -0.1944 -4.9283 -5.8965 27 9 -1.2433 -4.6277 -6.6930 28 6 -0.1495 -4.4469 -4.5966 29 9 -1.1542 -3.6762 -4.1258 30 1 -0.3634 0.5145 0.8896 31 1 -0.3633 0.5133 -0.8904 32 1 -0.3634 -1.0276 0.0005 33 1 1.6976 -1.7556 1.2384 34 1 1.6571 -0.2207 2.1399 35 1 3.9142 0.3408 1.3675 36 1 3.9414 -1.2825 2.1001 37 1 6.6843 -1.5125 2.6270 38 1 3.9144 0.3407 -1.3672 39 1 3.9437 -1.2832 -2.0984 40 1 1.3659 -2.5423 -0.3917 41 1 1.6731 -4.8282 -1.7856 42 1 -0.0122 -4.2735 -1.9298 43 1 2.7931 -5.7857 -3.6295 44 1 2.7077 -6.6496 -5.9322 45 1 0.7968 -6.1020 -7.3848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968365700.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:27 Heat of formation + Delta-G solvation = -103.876843 kcal Electronic energy + Delta-G solvation = -30203.873284 eV Core-core repulsion = 25856.797456 eV Total energy + Delta-G solvation = -4347.075828 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.51285 -49.60445 -41.25178 -39.98553 -38.89257 -35.96353 -34.22281 -33.77844 -32.95893 -31.27380 -30.98881 -29.16106 -28.38906 -25.80825 -24.11586 -23.82483 -23.30497 -22.74433 -21.58467 -20.25769 -18.94228 -18.67453 -18.34016 -18.17530 -17.88144 -17.23737 -16.90090 -16.53461 -16.19174 -16.02232 -15.74796 -15.65355 -15.45551 -15.27463 -14.91834 -14.83447 -14.74419 -14.36266 -14.09790 -13.98262 -13.49529 -13.25037 -13.14457 -13.00413 -12.95209 -12.80690 -12.66792 -12.54594 -12.39309 -12.23856 -12.16897 -11.89190 -11.63937 -11.27982 -11.07945 -10.90126 -10.51815 -9.95515 -9.88428 -9.72970 -8.60812 -7.83698 -5.29061 -0.04586 -0.02555 1.49996 1.50258 1.57676 1.73679 2.20753 2.53227 2.58124 2.80089 3.28620 3.30904 3.46530 3.68866 3.75999 3.80557 3.94003 4.01789 4.04177 4.11050 4.19008 4.33116 4.48693 4.52373 4.63610 4.75382 4.77559 4.79927 4.84599 4.88542 4.99879 5.00188 5.04027 5.08171 5.16708 5.22831 5.27678 5.30316 5.45500 5.54317 5.67119 5.68094 5.77979 5.80627 6.41417 6.68923 7.18570 7.36289 7.88257 8.41134 9.21756 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012533 B = 0.003682 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.575378 B = 7603.641391 C = 9313.639096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.086 4.086 3 H 0.074 0.926 4 C -0.122 4.122 5 C 0.175 3.825 6 N -0.597 5.597 7 C -0.253 4.253 8 H 0.058 0.942 9 C -0.046 4.046 10 N -0.934 5.934 11 Si 0.963 3.037 12 H -0.282 1.282 13 H -0.298 1.298 14 H -0.271 1.271 15 C 0.137 3.863 16 C 0.147 3.853 17 H 0.073 0.927 18 N -0.693 5.693 19 C 0.512 3.488 20 O -0.585 6.585 21 C -0.101 4.101 22 C -0.080 4.080 23 C -0.094 4.094 24 C -0.089 4.089 25 C -0.122 4.122 26 C 0.042 3.958 27 F -0.142 7.142 28 C 0.055 3.945 29 F -0.142 7.142 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.075 0.925 35 H -0.008 1.008 36 H 0.057 0.943 37 H 0.249 0.751 38 H 0.014 0.986 39 H 0.036 0.964 40 H 0.408 0.592 41 H 0.136 0.864 42 H 0.124 0.876 43 H 0.158 0.842 44 H 0.177 0.823 45 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.527 -9.216 -8.786 18.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.106 4.106 3 H 0.092 0.908 4 C -0.161 4.161 5 C 0.049 3.951 6 N -0.320 5.320 7 C -0.384 4.384 8 H 0.076 0.924 9 C -0.242 4.242 10 N -0.580 5.580 11 Si 0.792 3.208 12 H -0.208 1.208 13 H -0.224 1.224 14 H -0.196 1.196 15 C 0.010 3.990 16 C 0.041 3.959 17 H 0.091 0.909 18 N -0.344 5.344 19 C 0.299 3.701 20 O -0.465 6.465 21 C -0.140 4.140 22 C -0.081 4.081 23 C -0.112 4.112 24 C -0.107 4.107 25 C -0.141 4.141 26 C 0.022 3.978 27 F -0.121 7.121 28 C 0.035 3.965 29 F -0.121 7.121 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.010 0.990 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.032 0.968 39 H 0.055 0.945 40 H 0.245 0.755 41 H 0.153 0.847 42 H 0.142 0.858 43 H 0.175 0.825 44 H 0.195 0.805 45 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -13.316 -8.769 -9.391 18.504 hybrid contribution 0.439 -0.097 0.556 0.715 sum -12.876 -8.866 -8.836 17.957 Atomic orbital electron populations 1.21754 0.93162 1.02217 1.02074 1.21248 0.96741 0.99068 0.93497 0.90805 1.22067 0.96570 1.00169 0.97257 1.20648 0.90723 0.94935 0.88762 1.44155 1.48198 1.39396 1.00276 1.19306 1.09881 1.03122 1.06050 0.92416 1.25726 0.98209 1.00166 1.00068 1.70178 1.38392 1.30762 1.18711 0.85408 0.78256 0.80485 0.76688 1.20781 1.22410 1.19610 1.21297 0.93222 0.95602 0.88856 1.21253 0.94067 0.82165 0.98459 0.90940 1.45793 1.66257 1.13399 1.08904 1.20811 0.76969 0.88770 0.83505 1.90671 1.52465 1.71178 1.32220 1.20683 1.06204 0.92611 0.94513 1.19455 0.93616 0.99211 0.95861 1.21430 0.97128 0.95473 0.97205 1.21490 0.97984 0.98805 0.92428 1.21450 0.92289 0.97463 1.02872 1.17985 0.88617 1.03427 0.87789 1.91478 1.55671 1.92144 1.72803 1.17801 0.88708 0.97116 0.92880 1.91453 1.58801 1.73232 1.88614 0.91166 0.92934 0.92319 0.91965 0.90691 0.99022 0.92447 0.94198 0.96830 0.94545 0.75525 0.84651 0.85842 0.82461 0.80537 0.81024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 9.05 71.98 0.65 -2.42 16 2 C -0.09 -2.54 2.48 -10.76 -0.03 -2.56 16 3 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 4 C -0.12 -3.93 5.20 30.68 0.16 -3.77 16 5 C 0.17 7.84 5.30 86.36 0.46 8.30 16 6 N -0.60 -28.56 2.91 -699.09 -2.03 -30.59 16 7 C -0.25 -13.38 9.58 84.03 0.81 -12.57 16 8 H 0.06 3.05 7.88 -2.91 -0.02 3.02 16 9 C -0.05 -2.48 4.92 84.86 0.42 -2.06 16 10 N -0.93 -53.58 11.19 21.65 0.24 -53.34 16 11 Si 0.96 42.99 29.59 68.60 2.03 45.02 16 12 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 13 H -0.30 -13.53 7.11 99.48 0.71 -12.82 16 14 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 15 C 0.14 5.90 6.12 86.37 0.53 6.43 16 16 C 0.15 5.01 2.24 45.07 0.10 5.11 16 17 H 0.07 2.57 7.58 -2.39 -0.02 2.55 16 18 N -0.69 -21.17 4.25 -442.15 -1.88 -23.05 16 19 C 0.51 16.23 7.78 87.66 0.68 16.91 16 20 O -0.58 -23.28 15.62 -3.02 -0.05 -23.33 16 21 C -0.10 -2.31 5.56 29.10 0.16 -2.15 16 22 C -0.08 -1.94 4.42 -19.83 -0.09 -2.03 16 23 C -0.09 -1.83 9.67 22.27 0.22 -1.61 16 24 C -0.09 -1.37 10.04 22.27 0.22 -1.14 16 25 C -0.12 -2.13 10.02 22.31 0.22 -1.91 16 26 C 0.04 1.03 7.31 22.41 0.16 1.20 16 27 F -0.14 -3.79 17.18 44.97 0.77 -3.02 16 28 C 0.05 1.51 7.14 22.41 0.16 1.67 16 29 F -0.14 -4.35 16.57 44.97 0.75 -3.60 16 30 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.06 1.26 7.54 -2.39 -0.02 1.24 16 33 H 0.06 1.89 6.40 -2.39 -0.02 1.88 16 34 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 35 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 36 H 0.06 2.93 6.07 -2.39 -0.01 2.91 16 37 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 38 H 0.01 0.61 8.14 -2.38 -0.02 0.60 16 39 H 0.04 1.70 7.93 -2.39 -0.02 1.68 16 40 H 0.41 11.03 6.64 -92.71 -0.62 10.42 16 41 H 0.14 2.50 8.00 -2.39 -0.02 2.48 16 42 H 0.12 2.32 7.94 -2.38 -0.02 2.30 16 43 H 0.16 2.49 8.04 -2.91 -0.02 2.46 16 44 H 0.18 1.39 8.06 -2.91 -0.02 1.37 16 45 H 0.17 1.91 8.06 -2.92 -0.02 1.89 16 Total: -1.00 -70.36 372.77 5.07 -65.29 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.40 Total: 19.24 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: 4.84 Total: 7.38 kcal Atomic # 7 Polarization: -103.31 SS G_CDS: -3.67 Total: -106.98 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.05 Total: -23.33 kcal Atomic # 9 Polarization: -8.14 SS G_CDS: 1.52 Total: -6.62 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -70.36 5.07 -65.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968365700.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.584 kcal (2) G-P(sol) polarization free energy of solvation -70.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds