Wall clock time and date at job start Tue Mar 31 2020 22:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.46873 * 2 1 4 4 C 1.50700 * 109.47354 * 119.99950 * 2 1 3 5 5 N 1.31229 * 124.05644 * 299.98297 * 4 2 1 6 6 N 1.27337 * 120.04075 * 180.02562 * 5 4 2 7 7 S 1.56639 * 109.73908 * 359.68984 * 6 5 4 8 8 C 1.38251 * 124.05137 * 119.99963 * 4 2 1 9 9 C 1.47163 * 128.47948 * 359.97438 * 8 4 2 10 10 O 1.21627 * 119.99931 * 359.97438 * 9 8 4 11 11 N 1.34782 * 120.00212 * 180.02562 * 9 8 4 12 12 C 1.46495 * 119.99963 * 180.27502 * 11 9 8 13 13 H 1.09007 * 109.49998 * 34.71905 * 12 11 9 14 14 C 1.53191 * 109.50029 * 274.65571 * 12 11 9 15 15 N 1.46919 * 108.78008 * 185.41544 * 14 12 11 16 16 C 1.36938 * 120.63390 * 233.58912 * 15 14 12 17 17 H 1.08000 * 119.99927 * 27.68208 * 16 15 14 18 18 C 1.38811 * 119.99948 * 207.68566 * 16 15 14 19 19 N 1.31611 * 120.00128 * 17.36462 * 18 16 15 20 20 Si 1.86806 * 119.99614 * 197.36070 * 18 16 15 21 21 H 1.48503 * 109.46764 * 60.00448 * 20 18 16 22 22 H 1.48506 * 109.46744 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47449 * 300.00267 * 20 18 16 24 24 C 1.46926 * 118.73747 * 53.60491 * 15 14 12 25 25 C 1.53192 * 108.77839 * 306.39534 * 24 15 14 26 26 C 1.53036 * 109.33923 * 54.61575 * 25 24 15 27 27 H 1.09002 * 109.42991 * 58.68949 * 26 25 24 28 28 C 1.53002 * 109.48390 * 178.64520 * 26 25 24 29 29 H 1.09002 * 109.47067 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47263 * 299.99708 * 1 2 3 31 31 H 1.09004 * 109.47428 * 60.00216 * 1 2 3 32 32 H 1.09004 * 109.47376 * 239.99983 * 2 1 3 33 33 H 1.09003 * 109.47033 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47354 * 299.99812 * 3 2 1 35 35 H 1.08996 * 109.47325 * 60.00469 * 3 2 1 36 36 H 0.96993 * 119.99893 * 359.97438 * 11 9 8 37 37 H 1.09004 * 109.58485 * 305.20595 * 14 12 11 38 38 H 1.09002 * 109.58384 * 65.62753 * 14 12 11 39 39 H 0.97001 * 119.99967 * 179.97438 * 19 18 16 40 40 H 1.09005 * 109.58594 * 66.18113 * 24 15 14 41 41 H 1.09004 * 109.58586 * 186.60359 * 24 15 14 42 42 H 1.09003 * 109.49856 * 174.58712 * 25 24 15 43 43 H 1.08995 * 109.49411 * 294.68265 * 25 24 15 44 44 H 1.09003 * 109.46524 * 180.08800 * 28 26 25 45 45 H 1.09001 * 109.47345 * 300.08640 * 28 26 25 46 46 H 1.08994 * 109.47021 * 60.09260 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7651 -0.3318 2.4582 6 7 2.2310 -0.9898 3.4439 7 16 3.0768 -2.1996 2.9199 8 6 2.8304 -1.8389 1.2012 9 6 3.3444 -2.5668 0.0300 10 8 3.0722 -2.1836 -1.0918 11 7 4.1160 -3.6587 0.2004 12 6 4.6327 -4.3797 -0.9655 13 1 4.8524 -3.6707 -1.7638 14 6 3.5845 -5.3864 -1.4500 15 7 4.1656 -6.1894 -2.5344 16 6 3.5294 -6.2950 -3.7424 17 1 2.8846 -5.4990 -4.0846 18 6 3.7132 -7.4252 -4.5271 19 7 4.2020 -8.5245 -3.9935 20 14 3.2665 -7.3858 -6.3406 21 1 4.0678 -6.3396 -7.0251 22 1 3.5560 -8.7085 -6.9505 23 1 1.8213 -7.0779 -6.4879 24 6 5.4422 -6.8772 -2.2981 25 6 6.4696 -5.8539 -1.8041 26 6 5.9115 -5.1262 -0.5790 27 1 5.6862 -5.8520 0.2024 28 6 6.9487 -4.1270 -0.0625 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 4.3328 -3.9645 1.0950 37 1 3.2964 -6.0392 -0.6259 38 1 2.7087 -4.8527 -1.8194 39 1 4.3301 -9.3143 -4.5418 40 1 5.3057 -7.6516 -1.5431 41 1 5.7922 -7.3273 -3.2271 42 1 7.3927 -6.3666 -1.5336 43 1 6.6725 -5.1314 -2.5946 44 1 6.5515 -3.6100 0.8111 45 1 7.8596 -4.6585 0.2129 46 1 7.1738 -3.4007 -0.8434 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968454683.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:20 Heat of formation + Delta-G solvation = 41.868496 kcal Electronic energy + Delta-G solvation = -27819.844000 eV Core-core repulsion = 24065.221301 eV Total energy + Delta-G solvation = -3754.622698 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.27883 -39.81633 -37.77534 -35.72551 -34.61387 -33.20334 -31.47721 -31.11387 -29.18528 -27.75110 -27.28771 -27.09507 -24.28710 -23.64716 -22.35858 -21.61513 -21.10024 -20.43543 -19.45089 -18.11000 -17.45273 -16.83414 -16.16044 -15.88045 -15.33279 -14.92742 -14.66142 -14.47101 -14.32687 -13.81674 -13.56487 -13.47815 -13.31917 -13.27200 -13.16570 -12.57765 -12.50671 -12.30952 -12.12815 -11.73237 -11.58970 -11.42128 -11.39595 -11.14494 -11.06829 -10.81267 -10.75148 -10.52703 -10.33336 -10.23841 -10.04297 -10.02994 -9.94485 -9.91136 -9.74200 -9.62317 -8.99189 -8.44994 -6.72607 -5.81900 -3.24180 -0.46538 0.58871 1.25324 1.75943 2.92405 2.98211 3.39281 3.44226 3.46893 3.66758 4.29819 4.46933 4.59273 4.84439 4.97732 4.98238 5.02314 5.19753 5.30957 5.40303 5.51888 5.52673 5.54082 5.69683 5.73063 5.80006 5.85944 5.90499 5.95239 6.05844 6.08496 6.13225 6.20019 6.24180 6.42957 6.53713 6.56362 6.64050 6.74703 6.87697 7.29796 7.37335 7.49323 7.60334 7.79714 8.06819 8.41894 9.18336 9.80388 10.35478 11.26846 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014014 B = 0.003275 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.480748 B = 8548.348154 C = 9763.554197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.030 4.030 3 C -0.141 4.141 4 C 0.106 3.894 5 N -0.244 5.244 6 N -0.257 5.257 7 S 0.402 5.598 8 C -0.280 4.280 9 C 0.598 3.402 10 O -0.507 6.507 11 N -0.708 5.708 12 C 0.132 3.868 13 H 0.092 0.908 14 C 0.141 3.859 15 N -0.586 5.586 16 C -0.253 4.253 17 H 0.067 0.933 18 C 0.004 3.996 19 N -0.903 5.903 20 Si 0.903 3.097 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.167 3.833 25 C -0.133 4.133 26 C -0.092 4.092 27 H 0.069 0.931 28 C -0.146 4.146 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.125 0.875 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.393 0.607 37 H 0.018 0.982 38 H 0.060 0.940 39 H 0.254 0.746 40 H 0.019 0.981 41 H 0.090 0.910 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.045 0.955 45 H 0.054 0.946 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.190 13.301 13.400 18.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.052 4.052 3 C -0.198 4.198 4 C -0.041 4.041 5 N -0.109 5.109 6 N -0.237 5.237 7 S 0.539 5.461 8 C -0.421 4.421 9 C 0.380 3.620 10 O -0.382 6.382 11 N -0.359 5.359 12 C 0.028 3.972 13 H 0.110 0.890 14 C 0.013 3.987 15 N -0.308 5.308 16 C -0.383 4.383 17 H 0.085 0.915 18 C -0.194 4.194 19 N -0.548 5.548 20 Si 0.733 3.267 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.208 1.208 24 C 0.041 3.959 25 C -0.173 4.173 26 C -0.111 4.111 27 H 0.087 0.913 28 C -0.203 4.203 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.143 0.857 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.227 0.773 37 H 0.036 0.964 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.037 0.963 41 H 0.108 0.892 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.029 13.357 14.477 19.724 hybrid contribution -0.238 -0.076 -1.631 1.650 sum 0.790 13.281 12.846 18.495 Atomic orbital electron populations 1.21803 0.93129 1.02391 1.02610 1.20193 0.96706 0.96105 0.92186 1.21798 1.01118 0.94291 1.02636 1.22953 0.94359 0.92632 0.94135 1.70523 1.19784 1.24407 0.96229 1.78915 1.13551 1.06937 1.24290 1.82526 1.40351 1.28331 0.94892 1.27933 1.10208 1.03986 0.99958 1.16426 0.79061 0.80302 0.86179 1.90809 1.57456 1.66769 1.23208 1.46046 1.51085 1.27892 1.10840 1.21936 0.94704 0.94466 0.86142 0.88989 1.21189 0.94042 0.91877 0.91577 1.43978 1.20609 1.55950 1.10305 1.19173 1.25491 1.00101 0.93517 0.91540 1.25008 1.00786 0.94546 0.99073 1.70022 1.49325 1.00884 1.34525 0.86360 0.78465 0.76678 0.85247 1.20929 1.21636 1.20820 1.20864 0.83658 0.90819 1.00561 1.22249 0.99329 0.99833 0.95860 1.21328 0.93783 0.96870 0.99133 0.91291 1.21873 0.98799 0.99176 1.00454 0.92494 0.91979 0.91327 0.85733 0.92685 0.91355 0.91961 0.77281 0.96375 0.92184 0.93562 0.96266 0.89153 0.92568 0.92314 0.93552 0.92728 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.16 37.16 0.34 -1.11 16 2 C -0.03 -0.35 3.25 -91.77 -0.30 -0.64 16 3 C -0.14 -1.37 9.16 37.16 0.34 -1.03 16 4 C 0.11 1.32 5.53 -82.84 -0.46 0.87 16 5 N -0.24 -3.11 11.51 33.42 0.38 -2.73 16 6 N -0.26 -3.08 12.51 60.35 0.75 -2.33 16 7 S 0.40 3.82 23.05 -107.50 -2.48 1.34 16 8 C -0.28 -3.41 6.81 -35.96 -0.24 -3.65 16 9 C 0.60 8.51 7.77 -12.63 -0.10 8.41 16 10 O -0.51 -8.85 14.20 5.25 0.07 -8.78 16 11 N -0.71 -9.28 4.36 -54.85 -0.24 -9.52 16 12 C 0.13 2.16 2.06 -67.81 -0.14 2.02 16 13 H 0.09 1.72 7.57 -51.93 -0.39 1.33 16 14 C 0.14 2.89 6.10 -3.71 -0.02 2.86 16 15 N -0.59 -14.22 2.99 -172.32 -0.52 -14.73 16 16 C -0.25 -6.89 9.59 -15.06 -0.14 -7.03 16 17 H 0.07 1.82 7.89 -52.49 -0.41 1.40 16 18 C 0.00 0.12 4.91 -17.43 -0.09 0.04 16 19 N -0.90 -25.61 11.19 55.49 0.62 -24.99 16 20 Si 0.90 21.56 29.59 -169.99 -5.03 16.53 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.17 3.74 5.31 -3.71 -0.02 3.73 16 25 C -0.13 -2.31 5.36 -26.61 -0.14 -2.45 16 26 C -0.09 -1.35 2.27 -90.58 -0.21 -1.55 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 28 C -0.15 -1.71 9.02 37.16 0.34 -1.38 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.12 1.66 5.49 -51.93 -0.29 1.38 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.39 4.01 7.73 -40.82 -0.32 3.69 16 37 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 1.32 7.93 -51.93 -0.41 0.90 16 39 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 2.31 6.04 -51.93 -0.31 1.99 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.05 0.47 7.36 -51.93 -0.38 0.09 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 381.19 15.07 5.74 5.74 Total: -1.00 -30.39 381.19 -8.67 -39.06 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -7.15 Total: 1.32 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -0.84 Total: -0.93 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: 1.00 Total: -54.29 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.07 Total: -8.78 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Atomic # 16 Polarization: 3.82 SS G_CDS: -2.48 Total: 1.34 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.39 -8.67 -39.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968454683.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.930 kcal (2) G-P(sol) polarization free energy of solvation -30.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds