Wall clock time and date at job start Tue Mar 31 2020 22:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.46873 * 2 1 4 4 C 1.50700 * 109.47354 * 119.99950 * 2 1 3 5 5 N 1.31229 * 124.05644 * 299.98297 * 4 2 1 6 6 N 1.27337 * 120.04075 * 180.02562 * 5 4 2 7 7 S 1.56639 * 109.73908 * 359.68984 * 6 5 4 8 8 C 1.38251 * 124.05137 * 119.99963 * 4 2 1 9 9 C 1.47163 * 128.47948 * 359.97438 * 8 4 2 10 10 O 1.21627 * 119.99931 * 359.97438 * 9 8 4 11 11 N 1.34782 * 120.00212 * 180.02562 * 9 8 4 12 12 C 1.46495 * 119.99963 * 180.27502 * 11 9 8 13 13 H 1.09007 * 109.49998 * 34.71905 * 12 11 9 14 14 C 1.53191 * 109.50029 * 274.65571 * 12 11 9 15 15 N 1.46919 * 108.78008 * 185.41544 * 14 12 11 16 16 C 1.36938 * 120.63390 * 233.58912 * 15 14 12 17 17 H 1.08000 * 119.99927 * 27.68208 * 16 15 14 18 18 C 1.38811 * 119.99948 * 207.68566 * 16 15 14 19 19 N 1.31611 * 120.00128 * 17.36462 * 18 16 15 20 20 Si 1.86806 * 119.99614 * 197.36070 * 18 16 15 21 21 H 1.48503 * 109.46764 * 60.00448 * 20 18 16 22 22 H 1.48506 * 109.46744 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47449 * 300.00267 * 20 18 16 24 24 C 1.46926 * 118.73747 * 53.60491 * 15 14 12 25 25 C 1.53192 * 108.77839 * 306.39534 * 24 15 14 26 26 C 1.53036 * 109.33923 * 54.61575 * 25 24 15 27 27 H 1.09002 * 109.42991 * 58.68949 * 26 25 24 28 28 C 1.53002 * 109.48390 * 178.64520 * 26 25 24 29 29 H 1.09002 * 109.47067 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47263 * 299.99708 * 1 2 3 31 31 H 1.09004 * 109.47428 * 60.00216 * 1 2 3 32 32 H 1.09004 * 109.47376 * 239.99983 * 2 1 3 33 33 H 1.09003 * 109.47033 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47354 * 299.99812 * 3 2 1 35 35 H 1.08996 * 109.47325 * 60.00469 * 3 2 1 36 36 H 0.96993 * 119.99893 * 359.97438 * 11 9 8 37 37 H 1.09004 * 109.58485 * 305.20595 * 14 12 11 38 38 H 1.09002 * 109.58384 * 65.62753 * 14 12 11 39 39 H 0.97001 * 119.99967 * 179.97438 * 19 18 16 40 40 H 1.09005 * 109.58594 * 66.18113 * 24 15 14 41 41 H 1.09004 * 109.58586 * 186.60359 * 24 15 14 42 42 H 1.09003 * 109.49856 * 174.58712 * 25 24 15 43 43 H 1.08995 * 109.49411 * 294.68265 * 25 24 15 44 44 H 1.09003 * 109.46524 * 180.08800 * 28 26 25 45 45 H 1.09001 * 109.47345 * 300.08640 * 28 26 25 46 46 H 1.08994 * 109.47021 * 60.09260 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7651 -0.3318 2.4582 6 7 2.2310 -0.9898 3.4439 7 16 3.0768 -2.1996 2.9199 8 6 2.8304 -1.8389 1.2012 9 6 3.3444 -2.5668 0.0300 10 8 3.0722 -2.1836 -1.0918 11 7 4.1160 -3.6587 0.2004 12 6 4.6327 -4.3797 -0.9655 13 1 4.8524 -3.6707 -1.7638 14 6 3.5845 -5.3864 -1.4500 15 7 4.1656 -6.1894 -2.5344 16 6 3.5294 -6.2950 -3.7424 17 1 2.8846 -5.4990 -4.0846 18 6 3.7132 -7.4252 -4.5271 19 7 4.2020 -8.5245 -3.9935 20 14 3.2665 -7.3858 -6.3406 21 1 4.0678 -6.3396 -7.0251 22 1 3.5560 -8.7085 -6.9505 23 1 1.8213 -7.0779 -6.4879 24 6 5.4422 -6.8772 -2.2981 25 6 6.4696 -5.8539 -1.8041 26 6 5.9115 -5.1262 -0.5790 27 1 5.6862 -5.8520 0.2024 28 6 6.9487 -4.1270 -0.0625 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 4.3328 -3.9645 1.0950 37 1 3.2964 -6.0392 -0.6259 38 1 2.7087 -4.8527 -1.8194 39 1 4.3301 -9.3143 -4.5418 40 1 5.3057 -7.6516 -1.5431 41 1 5.7922 -7.3273 -3.2271 42 1 7.3927 -6.3666 -1.5336 43 1 6.6725 -5.1314 -2.5946 44 1 6.5515 -3.6100 0.8111 45 1 7.8596 -4.6585 0.2129 46 1 7.1738 -3.4007 -0.8434 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968454683.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:19 Heat of formation + Delta-G solvation = 22.897229 kcal Electronic energy + Delta-G solvation = -27820.666656 eV Core-core repulsion = 24065.221301 eV Total energy + Delta-G solvation = -3755.445354 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.22237 -41.04664 -39.20128 -36.65061 -36.17606 -34.60883 -33.02934 -32.42849 -30.59900 -29.07687 -28.33571 -28.08132 -25.94903 -24.87747 -23.53424 -22.77008 -22.57291 -21.64279 -20.85281 -19.05221 -18.67119 -18.54706 -17.21550 -17.08144 -16.76187 -16.24324 -16.02549 -15.75754 -15.42518 -15.21616 -15.18370 -14.96644 -14.54351 -14.18544 -14.10724 -14.04631 -13.59748 -13.42419 -13.19716 -13.11702 -13.06698 -12.72982 -12.65555 -12.32161 -12.25300 -12.24165 -12.04611 -12.00458 -11.92878 -11.65104 -11.50504 -11.34352 -11.27455 -10.95961 -10.92534 -10.81251 -10.59184 -10.21576 -8.68962 -7.89560 -5.34398 -1.39580 -0.29781 0.37591 0.80315 1.46159 1.48076 1.55085 1.79144 1.86167 2.51113 2.74885 3.25248 3.37080 3.53249 3.72956 3.80771 3.96084 4.01229 4.10407 4.13830 4.14701 4.45168 4.50570 4.65334 4.67725 4.77406 4.77929 4.89437 4.90865 4.92873 4.96154 5.05050 5.06672 5.12345 5.15965 5.22402 5.28430 5.36797 5.42917 5.47053 5.55236 5.64796 5.79181 6.29609 6.37892 6.55292 6.97950 7.14412 7.83809 8.33081 9.16043 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014014 B = 0.003275 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.480748 B = 8548.348154 C = 9763.554197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.034 4.034 3 C -0.135 4.135 4 C 0.105 3.895 5 N -0.261 5.261 6 N -0.280 5.280 7 S 0.503 5.497 8 C -0.309 4.309 9 C 0.602 3.398 10 O -0.544 6.544 11 N -0.695 5.695 12 C 0.151 3.849 13 H 0.068 0.932 14 C 0.142 3.858 15 N -0.605 5.605 16 C -0.268 4.268 17 H 0.056 0.944 18 C -0.041 4.041 19 N -0.929 5.929 20 Si 0.962 3.038 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.171 3.829 25 C -0.122 4.122 26 C -0.085 4.085 27 H 0.083 0.917 28 C -0.138 4.138 29 H 0.044 0.956 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.049 0.951 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.412 0.588 37 H 0.022 0.978 38 H 0.035 0.965 39 H 0.252 0.748 40 H 0.005 0.995 41 H 0.054 0.946 42 H 0.083 0.917 43 H 0.047 0.953 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.172 14.222 15.416 21.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.056 4.056 3 C -0.193 4.193 4 C -0.043 4.043 5 N -0.126 5.126 6 N -0.260 5.260 7 S 0.640 5.360 8 C -0.450 4.450 9 C 0.386 3.614 10 O -0.422 6.422 11 N -0.347 5.347 12 C 0.045 3.955 13 H 0.086 0.914 14 C 0.015 3.985 15 N -0.329 5.329 16 C -0.398 4.398 17 H 0.073 0.927 18 C -0.237 4.237 19 N -0.574 5.574 20 Si 0.790 3.210 21 H -0.205 1.205 22 H -0.215 1.215 23 H -0.205 1.205 24 C 0.046 3.954 25 C -0.161 4.161 26 C -0.104 4.104 27 H 0.102 0.898 28 C -0.195 4.195 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.122 0.878 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.249 0.751 37 H 0.040 0.960 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.023 0.977 41 H 0.073 0.927 42 H 0.101 0.899 43 H 0.066 0.934 44 H 0.087 0.913 45 H 0.092 0.908 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.018 14.298 16.553 21.967 hybrid contribution -0.575 -0.411 -2.163 2.275 sum 1.443 13.888 14.390 20.051 Atomic orbital electron populations 1.21777 0.92325 1.01883 1.03511 1.20196 0.97413 0.96835 0.91192 1.21763 1.00755 0.93263 1.03479 1.23110 0.94104 0.92678 0.94444 1.70596 1.20764 1.25121 0.96102 1.78666 1.14358 1.08194 1.24828 1.82113 1.37189 1.25361 0.91378 1.27712 1.11475 1.04520 1.01270 1.16624 0.78361 0.80142 0.86301 1.90801 1.58618 1.67755 1.25070 1.45750 1.50786 1.27367 1.10808 1.21405 0.94284 0.93028 0.86772 0.91395 1.21237 0.94554 0.92130 0.90575 1.44193 1.21508 1.56687 1.10491 1.19370 1.25496 0.99799 0.95131 0.92673 1.25669 1.01272 0.94228 1.02566 1.70151 1.50483 1.01210 1.35558 0.85429 0.78202 0.76554 0.80805 1.20519 1.21463 1.20484 1.20725 0.84266 0.91839 0.98549 1.22072 0.98770 0.98501 0.96801 1.21267 0.93435 0.97529 0.98148 0.89836 1.21805 0.98503 0.98308 1.00900 0.93672 0.91545 0.89924 0.87814 0.93177 0.89960 0.91623 0.75136 0.95975 0.94662 0.93907 0.97712 0.92730 0.89859 0.93372 0.91288 0.90759 0.93553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.16 71.98 0.66 -2.10 16 2 C -0.03 -0.79 3.25 -11.54 -0.04 -0.82 16 3 C -0.13 -2.53 9.16 71.98 0.66 -1.88 16 4 C 0.10 2.53 5.53 42.65 0.24 2.76 16 5 N -0.26 -6.32 11.51 -48.18 -0.55 -6.87 16 6 N -0.28 -6.08 12.51 37.02 0.46 -5.62 16 7 S 0.50 8.02 23.05 -56.49 -1.30 6.72 16 8 C -0.31 -7.09 6.81 24.62 0.17 -6.93 16 9 C 0.60 16.75 7.77 86.59 0.67 17.42 16 10 O -0.54 -19.49 14.20 -4.12 -0.06 -19.55 16 11 N -0.70 -17.09 4.36 -445.69 -1.95 -19.03 16 12 C 0.15 4.84 2.06 45.07 0.09 4.93 16 13 H 0.07 2.57 7.57 -2.38 -0.02 2.55 16 14 C 0.14 5.93 6.10 86.36 0.53 6.45 16 15 N -0.61 -30.25 2.99 -699.10 -2.09 -32.34 16 16 C -0.27 -15.08 9.59 84.03 0.81 -14.27 16 17 H 0.06 3.15 7.89 -2.91 -0.02 3.13 16 18 C -0.04 -2.31 4.91 84.86 0.42 -1.90 16 19 N -0.93 -54.09 11.19 21.65 0.24 -53.85 16 20 Si 0.96 45.29 29.59 68.60 2.03 47.31 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 24 C 0.17 7.85 5.31 86.36 0.46 8.31 16 25 C -0.12 -4.10 5.36 30.67 0.16 -3.94 16 26 C -0.08 -2.29 2.27 -10.77 -0.02 -2.31 16 27 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 28 C -0.14 -2.72 9.02 71.98 0.65 -2.08 16 29 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.10 2.86 5.49 -2.39 -0.01 2.84 16 33 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.41 7.06 7.73 -92.71 -0.72 6.34 16 37 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.03 1.61 7.93 -2.39 -0.02 1.59 16 39 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 40 H 0.00 0.23 8.14 -2.38 -0.02 0.21 16 41 H 0.05 2.88 6.04 -2.39 -0.01 2.86 16 42 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.07 1.07 7.36 -2.39 -0.02 1.05 16 45 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -68.93 381.19 2.50 -66.43 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.28 Total: 13.13 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 5.45 Total: 3.66 kcal Atomic # 7 Polarization: -113.82 SS G_CDS: -3.89 Total: -117.71 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.06 Total: -19.55 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Atomic # 16 Polarization: 8.02 SS G_CDS: -1.30 Total: 6.72 kcal Total: -68.93 2.50 -66.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968454683.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.325 kcal (2) G-P(sol) polarization free energy of solvation -68.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds