Wall clock time and date at job start Tue Mar 31 2020 22:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47070 * 2 1 4 4 C 1.50700 * 109.47070 * 120.00197 * 2 1 3 5 5 N 1.31235 * 124.05679 * 299.97755 * 4 2 1 6 6 N 1.27330 * 120.03980 * 180.02562 * 5 4 2 7 7 S 1.56633 * 109.74043 * 359.97438 * 6 5 4 8 8 C 1.38243 * 124.05311 * 119.99580 * 4 2 1 9 9 C 1.47171 * 128.47831 * 359.97438 * 8 4 2 10 10 O 1.21620 * 119.99636 * 0.02562 * 9 8 4 11 11 N 1.34777 * 120.00079 * 180.02562 * 9 8 4 12 12 C 1.46499 * 119.99849 * 179.97438 * 11 9 8 13 13 H 1.09007 * 109.49981 * 324.99532 * 12 11 9 14 14 C 1.53191 * 109.50122 * 85.06184 * 12 11 9 15 15 N 1.46928 * 108.77321 * 174.55565 * 14 12 11 16 16 C 1.36936 * 120.60975 * 126.42358 * 15 14 12 17 17 H 1.08000 * 120.00366 * 207.70625 * 16 15 14 18 18 C 1.38820 * 119.99777 * 27.70041 * 16 15 14 19 19 N 1.31615 * 119.99811 * 17.35833 * 18 16 15 20 20 Si 1.86806 * 119.99766 * 197.35636 * 18 16 15 21 21 H 1.48498 * 109.46670 * 90.00035 * 20 18 16 22 22 H 1.48502 * 109.46611 * 210.00039 * 20 18 16 23 23 H 1.48492 * 109.47071 * 329.99980 * 20 18 16 24 24 C 1.46927 * 118.76410 * 306.43987 * 15 14 12 25 25 C 1.53198 * 108.77300 * 53.58896 * 24 15 14 26 26 C 1.53038 * 109.49519 * 204.92939 * 12 11 9 27 27 H 1.08993 * 109.46336 * 298.69188 * 26 12 11 28 28 C 1.53005 * 109.45900 * 58.66754 * 26 12 11 29 29 H 1.08995 * 109.47515 * 59.99470 * 1 2 3 30 30 H 1.08996 * 109.47235 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47095 * 299.99416 * 1 2 3 32 32 H 1.08998 * 109.46665 * 240.00275 * 2 1 3 33 33 H 1.08997 * 109.47007 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47384 * 300.00610 * 3 2 1 35 35 H 1.09009 * 109.46841 * 60.00164 * 3 2 1 36 36 H 0.96998 * 119.99730 * 359.97438 * 11 9 8 37 37 H 1.09005 * 109.58273 * 294.36885 * 14 12 11 38 38 H 1.08997 * 109.59004 * 54.79158 * 14 12 11 39 39 H 0.97006 * 119.99700 * 180.02562 * 19 18 16 40 40 H 1.09002 * 109.58865 * 293.80496 * 24 15 14 41 41 H 1.09003 * 109.70888 * 173.44566 * 24 15 14 42 42 H 1.09007 * 109.49419 * 185.41268 * 25 24 15 43 43 H 1.09002 * 109.49270 * 65.32223 * 25 24 15 44 44 H 1.08999 * 109.47754 * 59.99245 * 28 26 12 45 45 H 1.09002 * 109.47248 * 180.02562 * 28 26 12 46 46 H 1.09008 * 109.46501 * 299.99356 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7652 -0.3319 2.4582 6 7 2.2310 -0.9899 3.4438 7 16 3.0826 -2.1955 2.9199 8 6 2.8303 -1.8390 1.2012 9 6 3.3443 -2.5670 0.0299 10 8 3.0729 -2.1831 -1.0917 11 7 4.1158 -3.6589 0.2004 12 6 4.6269 -4.3838 -0.9656 13 1 3.8857 -4.3570 -1.7644 14 6 5.9233 -3.7260 -1.4487 15 7 6.4908 -4.5394 -2.5328 16 6 6.8014 -3.9730 -3.7402 17 1 6.7836 -4.5724 -4.6384 18 6 7.1392 -2.6283 -3.8096 19 7 7.4944 -1.9819 -2.7196 20 14 7.0897 -1.7364 -5.4503 21 1 5.7398 -1.1525 -5.6555 22 1 8.1042 -0.6520 -5.4549 23 1 7.3856 -2.6958 -6.5443 24 6 6.7183 -5.9717 -2.2973 25 6 5.4125 -6.6039 -1.8050 26 6 4.9096 -5.8375 -0.5795 27 1 5.6686 -5.8646 0.2022 28 6 3.6238 -6.4873 -0.0644 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 4.3325 -3.9647 1.0950 37 1 5.7086 -2.7231 -1.8178 38 1 6.6339 -3.6698 -0.6242 39 1 7.7301 -1.0422 -2.7681 40 1 7.4935 -6.0992 -1.5417 41 1 7.0297 -6.4519 -3.2249 42 1 5.5914 -7.6447 -1.5350 43 1 4.6644 -6.5562 -2.5963 44 1 2.8644 -6.4598 -0.8458 45 1 3.8250 -7.5226 0.2110 46 1 3.2661 -5.9423 0.8092 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968454685.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:26 Heat of formation + Delta-G solvation = 42.169577 kcal Electronic energy + Delta-G solvation = -28214.988734 eV Core-core repulsion = 24460.379092 eV Total energy + Delta-G solvation = -3754.609642 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.14021 -39.64578 -37.70945 -35.59460 -34.47224 -33.28470 -31.37563 -30.99118 -29.11007 -27.62072 -27.16539 -27.10992 -24.22334 -23.62512 -22.27090 -21.51561 -21.05322 -20.28114 -19.39995 -17.96681 -17.33570 -16.85598 -16.01549 -15.75294 -15.22152 -14.94503 -14.48096 -14.28270 -14.19715 -13.80441 -13.64628 -13.44333 -13.19731 -13.13553 -13.03740 -12.49427 -12.41371 -12.19253 -12.11497 -11.74823 -11.66598 -11.29732 -11.26637 -10.97785 -10.94327 -10.78285 -10.73253 -10.51734 -10.38911 -10.20361 -10.04961 -9.95402 -9.90105 -9.79014 -9.63619 -9.55854 -8.73785 -8.47314 -6.71798 -5.80336 -3.23395 -0.32463 0.72280 1.38338 1.89750 3.08713 3.19676 3.41028 3.47526 3.48189 3.80110 4.44309 4.50020 4.72865 4.97722 5.08679 5.10398 5.11520 5.17332 5.31624 5.44248 5.52989 5.63461 5.66250 5.81041 5.82179 5.86209 5.91189 5.94563 6.02948 6.03311 6.15637 6.21793 6.28906 6.32620 6.39382 6.43729 6.62549 6.67090 6.77561 6.90585 7.17773 7.53038 7.63955 7.65606 7.79903 8.27331 8.43141 9.18032 9.81922 10.36253 11.27738 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010644 B = 0.004302 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.870765 B = 6506.472527 C = 8208.301842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.030 4.030 3 C -0.141 4.141 4 C 0.104 3.896 5 N -0.244 5.244 6 N -0.259 5.259 7 S 0.398 5.602 8 C -0.274 4.274 9 C 0.597 3.403 10 O -0.502 6.502 11 N -0.706 5.706 12 C 0.124 3.876 13 H 0.088 0.912 14 C 0.165 3.835 15 N -0.587 5.587 16 C -0.258 4.258 17 H 0.067 0.933 18 C 0.008 3.992 19 N -0.899 5.899 20 Si 0.901 3.099 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.142 3.858 25 C -0.125 4.125 26 C -0.093 4.093 27 H 0.069 0.931 28 C -0.145 4.145 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.125 0.875 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.391 0.609 37 H 0.097 0.903 38 H 0.018 0.982 39 H 0.254 0.746 40 H 0.019 0.981 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.053 0.947 45 H 0.052 0.948 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.590 -3.215 10.793 15.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.052 4.052 3 C -0.199 4.199 4 C -0.042 4.042 5 N -0.110 5.110 6 N -0.240 5.240 7 S 0.534 5.466 8 C -0.415 4.415 9 C 0.379 3.621 10 O -0.378 6.378 11 N -0.357 5.357 12 C 0.019 3.981 13 H 0.106 0.894 14 C 0.038 3.962 15 N -0.309 5.309 16 C -0.387 4.387 17 H 0.085 0.915 18 C -0.191 4.191 19 N -0.543 5.543 20 Si 0.731 3.269 21 H -0.212 1.212 22 H -0.218 1.218 23 H -0.204 1.204 24 C 0.015 3.985 25 C -0.165 4.165 26 C -0.112 4.112 27 H 0.087 0.913 28 C -0.203 4.203 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.143 0.857 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.225 0.775 37 H 0.115 0.885 38 H 0.036 0.964 39 H 0.064 0.936 40 H 0.036 0.964 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.680 -2.801 11.957 16.275 hybrid contribution 0.043 0.598 -1.495 1.610 sum -10.638 -2.203 10.463 15.082 Atomic orbital electron populations 1.21792 0.93337 1.02074 1.02543 1.20189 0.96439 0.96301 0.92284 1.21799 1.01527 0.94138 1.02462 1.22924 0.94716 0.92517 0.94081 1.70507 1.20010 1.24185 0.96253 1.78895 1.13612 1.07156 1.24294 1.82465 1.40242 1.28756 0.95095 1.27976 1.09560 1.04076 0.99890 1.16399 0.79057 0.80518 0.86137 1.90818 1.58104 1.65720 1.23142 1.45982 1.50864 1.28185 1.10625 1.22164 0.99728 0.90191 0.86007 0.89422 1.21121 0.88217 0.96778 0.90090 1.43944 1.71249 1.03149 1.12594 1.19164 1.40964 0.93677 0.84887 0.91500 1.25022 0.98679 0.98434 0.96978 1.70011 1.47252 1.09819 1.27184 0.86310 0.77545 0.79496 0.83553 1.21184 1.21774 1.20389 1.20971 0.93006 0.86243 0.98254 1.22073 1.00093 0.97728 0.96566 1.21323 0.97009 0.94308 0.98584 0.91304 1.21870 0.97843 0.99951 1.00631 0.91423 0.92739 0.92017 0.85690 0.92379 0.91390 0.92056 0.77546 0.88508 0.96354 0.93615 0.96360 0.92512 0.92465 0.91998 0.92786 0.92905 0.93375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.16 37.16 0.34 -1.22 16 2 C -0.03 -0.40 3.25 -91.77 -0.30 -0.70 16 3 C -0.14 -1.73 9.16 37.16 0.34 -1.39 16 4 C 0.10 1.49 5.53 -82.85 -0.46 1.03 16 5 N -0.24 -3.48 11.51 33.42 0.38 -3.10 16 6 N -0.26 -3.47 12.51 60.35 0.75 -2.72 16 7 S 0.40 4.38 23.05 -107.50 -2.48 1.90 16 8 C -0.27 -3.87 6.81 -35.95 -0.24 -4.11 16 9 C 0.60 9.86 7.77 -12.63 -0.10 9.77 16 10 O -0.50 -10.11 14.21 5.26 0.07 -10.04 16 11 N -0.71 -10.64 4.37 -54.85 -0.24 -10.88 16 12 C 0.12 2.21 2.06 -67.81 -0.14 2.07 16 13 H 0.09 1.78 7.58 -51.92 -0.39 1.39 16 14 C 0.17 3.80 4.88 -3.71 -0.02 3.78 16 15 N -0.59 -14.21 3.00 -172.31 -0.52 -14.72 16 16 C -0.26 -6.98 9.59 -15.06 -0.14 -7.13 16 17 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16 18 C 0.01 0.22 4.91 -17.43 -0.09 0.14 16 19 N -0.90 -26.04 11.19 55.49 0.62 -25.42 16 20 Si 0.90 21.94 29.59 -169.99 -5.03 16.91 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.14 2.78 6.51 -3.71 -0.02 2.75 16 25 C -0.12 -1.96 5.36 -26.61 -0.14 -2.10 16 26 C -0.09 -1.36 2.27 -90.58 -0.21 -1.57 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 28 C -0.15 -1.71 9.02 37.16 0.34 -1.38 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.13 1.95 5.49 -51.93 -0.29 1.66 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 36 H 0.39 4.66 7.73 -40.82 -0.32 4.34 16 37 H 0.10 2.64 6.04 -51.93 -0.31 2.33 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 1.10 7.94 -51.93 -0.41 0.68 16 42 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.05 0.51 7.36 -51.92 -0.38 0.12 16 LS Contribution 381.20 15.07 5.74 5.74 Total: -1.00 -31.12 381.20 -8.67 -39.79 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -7.15 Total: 2.58 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -0.84 Total: -0.06 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: 1.00 Total: -56.84 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.07 Total: -10.04 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Atomic # 16 Polarization: 4.38 SS G_CDS: -2.48 Total: 1.90 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.12 -8.67 -39.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968454685.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.961 kcal (2) G-P(sol) polarization free energy of solvation -31.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds