Wall clock time and date at job start Tue Mar 31 2020 22:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47070 * 2 1 4 4 C 1.50700 * 109.47070 * 120.00197 * 2 1 3 5 5 N 1.31235 * 124.05679 * 299.97755 * 4 2 1 6 6 N 1.27330 * 120.03980 * 180.02562 * 5 4 2 7 7 S 1.56633 * 109.74043 * 359.97438 * 6 5 4 8 8 C 1.38243 * 124.05311 * 119.99580 * 4 2 1 9 9 C 1.47171 * 128.47831 * 359.97438 * 8 4 2 10 10 O 1.21620 * 119.99636 * 0.02562 * 9 8 4 11 11 N 1.34777 * 120.00079 * 180.02562 * 9 8 4 12 12 C 1.46499 * 119.99849 * 179.97438 * 11 9 8 13 13 H 1.09007 * 109.49981 * 324.99532 * 12 11 9 14 14 C 1.53191 * 109.50122 * 85.06184 * 12 11 9 15 15 N 1.46928 * 108.77321 * 174.55565 * 14 12 11 16 16 C 1.36936 * 120.60975 * 126.42358 * 15 14 12 17 17 H 1.08000 * 120.00366 * 207.70625 * 16 15 14 18 18 C 1.38820 * 119.99777 * 27.70041 * 16 15 14 19 19 N 1.31615 * 119.99811 * 17.35833 * 18 16 15 20 20 Si 1.86806 * 119.99766 * 197.35636 * 18 16 15 21 21 H 1.48498 * 109.46670 * 90.00035 * 20 18 16 22 22 H 1.48502 * 109.46611 * 210.00039 * 20 18 16 23 23 H 1.48492 * 109.47071 * 329.99980 * 20 18 16 24 24 C 1.46927 * 118.76410 * 306.43987 * 15 14 12 25 25 C 1.53198 * 108.77300 * 53.58896 * 24 15 14 26 26 C 1.53038 * 109.49519 * 204.92939 * 12 11 9 27 27 H 1.08993 * 109.46336 * 298.69188 * 26 12 11 28 28 C 1.53005 * 109.45900 * 58.66754 * 26 12 11 29 29 H 1.08995 * 109.47515 * 59.99470 * 1 2 3 30 30 H 1.08996 * 109.47235 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47095 * 299.99416 * 1 2 3 32 32 H 1.08998 * 109.46665 * 240.00275 * 2 1 3 33 33 H 1.08997 * 109.47007 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47384 * 300.00610 * 3 2 1 35 35 H 1.09009 * 109.46841 * 60.00164 * 3 2 1 36 36 H 0.96998 * 119.99730 * 359.97438 * 11 9 8 37 37 H 1.09005 * 109.58273 * 294.36885 * 14 12 11 38 38 H 1.08997 * 109.59004 * 54.79158 * 14 12 11 39 39 H 0.97006 * 119.99700 * 180.02562 * 19 18 16 40 40 H 1.09002 * 109.58865 * 293.80496 * 24 15 14 41 41 H 1.09003 * 109.70888 * 173.44566 * 24 15 14 42 42 H 1.09007 * 109.49419 * 185.41268 * 25 24 15 43 43 H 1.09002 * 109.49270 * 65.32223 * 25 24 15 44 44 H 1.08999 * 109.47754 * 59.99245 * 28 26 12 45 45 H 1.09002 * 109.47248 * 180.02562 * 28 26 12 46 46 H 1.09008 * 109.46501 * 299.99356 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7652 -0.3319 2.4582 6 7 2.2310 -0.9899 3.4438 7 16 3.0826 -2.1955 2.9199 8 6 2.8303 -1.8390 1.2012 9 6 3.3443 -2.5670 0.0299 10 8 3.0729 -2.1831 -1.0917 11 7 4.1158 -3.6589 0.2004 12 6 4.6269 -4.3838 -0.9656 13 1 3.8857 -4.3570 -1.7644 14 6 5.9233 -3.7260 -1.4487 15 7 6.4908 -4.5394 -2.5328 16 6 6.8014 -3.9730 -3.7402 17 1 6.7836 -4.5724 -4.6384 18 6 7.1392 -2.6283 -3.8096 19 7 7.4944 -1.9819 -2.7196 20 14 7.0897 -1.7364 -5.4503 21 1 5.7398 -1.1525 -5.6555 22 1 8.1042 -0.6520 -5.4549 23 1 7.3856 -2.6958 -6.5443 24 6 6.7183 -5.9717 -2.2973 25 6 5.4125 -6.6039 -1.8050 26 6 4.9096 -5.8375 -0.5795 27 1 5.6686 -5.8646 0.2022 28 6 3.6238 -6.4873 -0.0644 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 4.3325 -3.9647 1.0950 37 1 5.7086 -2.7231 -1.8178 38 1 6.6339 -3.6698 -0.6242 39 1 7.7301 -1.0422 -2.7681 40 1 7.4935 -6.0992 -1.5417 41 1 7.0297 -6.4519 -3.2249 42 1 5.5914 -7.6447 -1.5350 43 1 4.6644 -6.5562 -2.5963 44 1 2.8644 -6.4598 -0.8458 45 1 3.8250 -7.5226 0.2110 46 1 3.2661 -5.9423 0.8092 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968454685.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:25 Heat of formation + Delta-G solvation = 22.175841 kcal Electronic energy + Delta-G solvation = -28215.855728 eV Core-core repulsion = 24460.379092 eV Total energy + Delta-G solvation = -3755.476636 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.23033 -41.01163 -39.17947 -36.65220 -36.10535 -34.79104 -32.87852 -32.41684 -30.57718 -29.04389 -28.39234 -28.10827 -25.93285 -24.92540 -23.52503 -22.77136 -22.51363 -21.64318 -20.80849 -19.04686 -18.73222 -18.55897 -17.16970 -17.12786 -16.79595 -16.27430 -15.88140 -15.75701 -15.40550 -15.24090 -15.21622 -14.91118 -14.51225 -14.14210 -14.13210 -14.04964 -13.59849 -13.43656 -13.27776 -13.09000 -13.04146 -12.75466 -12.57763 -12.34066 -12.28385 -12.26623 -12.16139 -12.02567 -11.87871 -11.62886 -11.53096 -11.35732 -11.21241 -10.96491 -10.91916 -10.82337 -10.54770 -10.20044 -8.68961 -7.89155 -5.34012 -1.40550 -0.31647 0.36046 0.79055 1.42144 1.46962 1.52672 1.79283 1.93115 2.49629 2.72766 3.27163 3.36481 3.54625 3.78352 3.84637 3.94471 4.00889 4.10708 4.12126 4.16540 4.48211 4.56910 4.64062 4.68297 4.74589 4.74725 4.87004 4.88226 4.94067 4.99896 5.07747 5.12915 5.18098 5.20417 5.25663 5.26873 5.34241 5.40986 5.46760 5.54767 5.63076 5.77446 6.29829 6.39673 6.53741 7.01457 7.13660 7.85781 8.34241 9.15582 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010644 B = 0.004302 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.870765 B = 6506.472527 C = 8208.301842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.036 4.036 3 C -0.137 4.137 4 C 0.104 3.896 5 N -0.260 5.260 6 N -0.278 5.278 7 S 0.504 5.496 8 C -0.310 4.310 9 C 0.598 3.402 10 O -0.547 6.547 11 N -0.695 5.695 12 C 0.141 3.859 13 H 0.060 0.940 14 C 0.176 3.824 15 N -0.608 5.608 16 C -0.263 4.263 17 H 0.068 0.932 18 C -0.046 4.046 19 N -0.929 5.929 20 Si 0.957 3.043 21 H -0.293 1.293 22 H -0.294 1.294 23 H -0.263 1.263 24 C 0.135 3.865 25 C -0.115 4.115 26 C -0.087 4.087 27 H 0.082 0.918 28 C -0.138 4.138 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.039 0.961 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.409 0.591 37 H 0.047 0.953 38 H 0.002 0.998 39 H 0.247 0.753 40 H 0.022 0.978 41 H 0.055 0.945 42 H 0.097 0.903 43 H 0.052 0.948 44 H 0.045 0.955 45 H 0.079 0.921 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.571 -5.142 12.570 17.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.058 4.058 3 C -0.195 4.195 4 C -0.044 4.044 5 N -0.124 5.124 6 N -0.259 5.259 7 S 0.641 5.359 8 C -0.450 4.450 9 C 0.382 3.618 10 O -0.425 6.425 11 N -0.346 5.346 12 C 0.035 3.965 13 H 0.079 0.921 14 C 0.048 3.952 15 N -0.331 5.331 16 C -0.393 4.393 17 H 0.086 0.914 18 C -0.242 4.242 19 N -0.575 5.575 20 Si 0.786 3.214 21 H -0.220 1.220 22 H -0.220 1.220 23 H -0.187 1.187 24 C 0.010 3.990 25 C -0.154 4.154 26 C -0.106 4.106 27 H 0.101 0.899 28 C -0.195 4.195 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.117 0.883 33 H 0.058 0.942 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.246 0.754 37 H 0.066 0.934 38 H 0.020 0.980 39 H 0.056 0.944 40 H 0.040 0.960 41 H 0.073 0.927 42 H 0.115 0.885 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.098 0.902 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.664 -4.777 13.773 18.670 hybrid contribution 0.418 1.121 -1.961 2.297 sum -11.246 -3.656 11.812 16.714 Atomic orbital electron populations 1.21747 0.91512 1.02191 1.03552 1.20186 0.97985 0.96434 0.91170 1.21772 1.00290 0.93800 1.03600 1.23070 0.94371 0.92479 0.94470 1.70584 1.21029 1.24813 0.96003 1.78641 1.14235 1.08298 1.24747 1.82025 1.36953 1.25758 0.91205 1.27749 1.11029 1.04869 1.01391 1.16682 0.78519 0.80323 0.86316 1.90801 1.59631 1.66777 1.25268 1.45743 1.50312 1.27719 1.10839 1.21658 0.96030 0.92319 0.86460 0.92128 1.20829 0.90172 0.95073 0.89080 1.44217 1.71856 1.05082 1.11982 1.19497 1.39509 0.93999 0.86307 0.91412 1.25710 0.99407 0.99324 0.99741 1.70157 1.49054 1.09423 1.28886 0.85415 0.76762 0.78484 0.80781 1.21987 1.22007 1.18737 1.21183 0.95485 0.83751 0.98561 1.21966 0.97289 0.99535 0.96633 1.21305 0.99209 0.91501 0.98586 0.89946 1.21804 0.95546 1.01371 1.00780 0.89968 0.93055 0.91384 0.88290 0.94226 0.89934 0.91191 0.75377 0.93421 0.98045 0.94435 0.96023 0.92686 0.88506 0.92941 0.93597 0.90229 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 9.16 71.98 0.66 -2.24 16 2 C -0.04 -0.98 3.25 -11.54 -0.04 -1.02 16 3 C -0.14 -3.41 9.16 71.98 0.66 -2.75 16 4 C 0.10 2.95 5.53 42.65 0.24 3.19 16 5 N -0.26 -7.15 11.51 -48.19 -0.55 -7.71 16 6 N -0.28 -6.90 12.51 37.02 0.46 -6.44 16 7 S 0.50 9.84 23.05 -56.49 -1.30 8.53 16 8 C -0.31 -8.61 6.81 24.62 0.17 -8.44 16 9 C 0.60 20.16 7.77 86.59 0.67 20.83 16 10 O -0.55 -23.29 14.21 -4.10 -0.06 -23.35 16 11 N -0.69 -20.61 4.37 -445.68 -1.95 -22.56 16 12 C 0.14 5.06 2.06 45.07 0.09 5.15 16 13 H 0.06 2.54 7.58 -2.38 -0.02 2.52 16 14 C 0.18 8.37 4.88 86.36 0.42 8.80 16 15 N -0.61 -30.09 3.00 -699.06 -2.09 -32.18 16 16 C -0.26 -14.64 9.59 84.04 0.81 -13.83 16 17 H 0.07 3.67 7.89 -2.91 -0.02 3.65 16 18 C -0.05 -2.64 4.91 84.86 0.42 -2.22 16 19 N -0.93 -56.32 11.19 21.65 0.24 -56.08 16 20 Si 0.96 46.56 29.59 68.60 2.03 48.59 16 21 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 22 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 23 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 24 C 0.14 5.19 6.51 86.36 0.56 5.76 16 25 C -0.11 -3.32 5.36 30.67 0.16 -3.15 16 26 C -0.09 -2.33 2.27 -10.77 -0.02 -2.35 16 27 H 0.08 2.04 8.14 -2.39 -0.02 2.03 16 28 C -0.14 -2.71 9.02 71.98 0.65 -2.06 16 29 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.10 3.29 5.49 -2.39 -0.01 3.27 16 33 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.41 8.88 7.73 -92.71 -0.72 8.16 16 37 H 0.05 2.75 6.04 -2.38 -0.01 2.74 16 38 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 39 H 0.25 14.66 8.31 -92.70 -0.77 13.88 16 40 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.05 2.09 7.94 -2.39 -0.02 2.07 16 42 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 43 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.06 1.06 7.36 -2.38 -0.02 1.04 16 Total: -1.00 -72.12 381.20 2.50 -69.62 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.28 Total: 15.92 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 5.45 Total: 5.66 kcal Atomic # 7 Polarization: -121.08 SS G_CDS: -3.89 Total: -124.97 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.06 Total: -23.35 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Atomic # 16 Polarization: 9.84 SS G_CDS: -1.30 Total: 8.53 kcal Total: -72.12 2.50 -69.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968454685.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.793 kcal (2) G-P(sol) polarization free energy of solvation -72.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds