Wall clock time and date at job start Tue Mar 31 2020 22:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47284 * 2 1 4 4 C 1.50704 * 109.47157 * 120.00040 * 2 1 3 5 5 N 1.31238 * 124.05741 * 300.17283 * 4 2 1 6 6 N 1.27341 * 120.03785 * 180.33879 * 5 4 2 7 7 S 1.56638 * 109.73933 * 359.71106 * 6 5 4 8 8 C 1.38248 * 124.05364 * 119.99344 * 4 2 1 9 9 C 1.47175 * 128.47572 * 0.02562 * 8 4 2 10 10 O 1.21625 * 119.99841 * 359.68884 * 9 8 4 11 11 N 1.34775 * 119.99706 * 179.69436 * 9 8 4 12 12 C 1.46504 * 119.99549 * 179.71838 * 11 9 8 13 13 H 1.08996 * 109.49927 * 35.06949 * 12 11 9 14 14 C 1.53191 * 109.50229 * 275.00149 * 12 11 9 15 15 N 1.46930 * 108.77574 * 294.68527 * 14 12 11 16 16 C 1.36935 * 120.63001 * 126.36740 * 15 14 12 17 17 H 1.08006 * 120.00347 * 207.69253 * 16 15 14 18 18 C 1.38814 * 120.00233 * 27.68533 * 16 15 14 19 19 N 1.31627 * 119.99508 * 17.36372 * 18 16 15 20 20 Si 1.86799 * 120.00434 * 197.36218 * 18 16 15 21 21 H 1.48502 * 109.46949 * 60.00117 * 20 18 16 22 22 H 1.48500 * 109.47123 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46932 * 300.00229 * 20 18 16 24 24 C 1.46922 * 118.73936 * 306.39032 * 15 14 12 25 25 C 1.53200 * 108.77485 * 53.60960 * 24 15 14 26 26 C 1.53040 * 109.49342 * 155.16200 * 12 11 9 27 27 H 1.09004 * 109.45691 * 178.60620 * 26 12 11 28 28 C 1.52994 * 109.46572 * 298.56830 * 26 12 11 29 29 H 1.09009 * 109.46854 * 299.99561 * 1 2 3 30 30 H 1.08995 * 109.47307 * 59.99796 * 1 2 3 31 31 H 1.08995 * 109.47398 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46783 * 239.99593 * 2 1 3 33 33 H 1.08999 * 109.46738 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47115 * 300.00322 * 3 2 1 35 35 H 1.08999 * 109.46816 * 60.00217 * 3 2 1 36 36 H 0.97002 * 120.00416 * 0.02562 * 11 9 8 37 37 H 1.09000 * 109.58307 * 54.47058 * 14 12 11 38 38 H 1.08998 * 109.58925 * 174.75470 * 14 12 11 39 39 H 0.96999 * 119.99532 * 179.97438 * 19 18 16 40 40 H 1.08997 * 109.59083 * 173.39413 * 24 15 14 41 41 H 1.09000 * 109.58872 * 293.82357 * 24 15 14 42 42 H 1.08993 * 109.49856 * 65.31474 * 25 24 15 43 43 H 1.08998 * 109.49508 * 185.41559 * 25 24 15 44 44 H 1.09000 * 109.46874 * 59.99708 * 28 26 12 45 45 H 1.09000 * 109.47849 * 179.97438 * 28 26 12 46 46 H 1.09000 * 109.46925 * 300.00259 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7621 -0.3340 2.4583 6 7 2.2332 -0.9883 3.4440 7 16 3.0888 -2.1912 2.9200 8 6 2.8303 -1.8390 1.2013 9 6 3.3451 -2.5664 0.0300 10 8 3.0694 -2.1857 -1.0918 11 7 4.1218 -3.6545 0.2005 12 6 4.6292 -4.3822 -0.9655 13 1 4.8444 -3.6776 -1.7687 14 6 3.5761 -5.3896 -1.4376 15 7 3.3926 -6.4065 -0.3930 16 6 2.1456 -6.6819 0.1011 17 1 2.0341 -7.0538 1.1090 18 6 1.0247 -6.4831 -0.6932 19 7 1.1551 -6.3654 -1.9977 20 14 -0.6686 -6.3827 0.0891 21 1 -0.7039 -5.2504 1.0492 22 1 -1.6900 -6.1686 -0.9674 23 1 -0.9580 -7.6499 0.8073 24 6 4.5726 -7.1218 0.1115 25 6 5.6146 -6.0950 0.5663 26 6 5.9091 -5.1294 -0.5839 27 1 6.2725 -5.6904 -1.4450 28 6 6.9749 -4.1235 -0.1446 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 4.3413 -3.9585 1.0951 37 1 2.6321 -4.8747 -1.6161 38 1 3.9126 -5.8655 -2.3587 39 1 0.3718 -6.2268 -2.5528 40 1 4.2862 -7.7499 0.9551 41 1 4.9916 -7.7408 -0.6818 42 1 5.2278 -5.5375 1.4193 43 1 6.5315 -6.6098 0.8531 44 1 6.6117 -3.5619 0.7160 45 1 7.8865 -4.6554 0.1276 46 1 7.1858 -3.4364 -0.9641 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968454686.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:29 Heat of formation + Delta-G solvation = 43.345003 kcal Electronic energy + Delta-G solvation = -28899.729787 eV Core-core repulsion = 25145.171114 eV Total energy + Delta-G solvation = -3754.558672 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.98486 -39.65600 -37.66607 -35.47767 -34.24444 -33.02454 -31.27541 -31.00429 -29.31220 -27.59555 -27.09573 -27.03159 -24.23404 -23.44401 -22.24517 -21.62182 -21.19301 -20.29193 -18.88799 -17.84063 -17.37608 -16.75397 -15.88307 -15.46003 -15.06699 -14.95252 -14.52168 -14.19056 -14.10067 -13.90417 -13.73816 -13.36665 -13.11488 -13.04590 -12.92532 -12.67355 -12.27036 -12.12811 -12.05626 -11.67211 -11.50925 -11.27628 -11.21235 -11.12015 -10.98126 -10.85603 -10.77271 -10.59489 -10.30633 -10.23944 -10.00014 -9.79567 -9.73843 -9.65533 -9.59597 -9.52867 -8.58389 -8.51410 -6.72237 -5.83316 -3.25652 -0.15851 0.89724 1.54952 2.04393 3.22627 3.33455 3.40438 3.41610 3.44532 3.94765 4.44662 4.58014 4.89534 5.06777 5.13861 5.15199 5.18269 5.21630 5.25787 5.35139 5.47796 5.69314 5.74671 5.78494 5.84003 5.87818 5.91173 5.94402 6.06826 6.08535 6.18288 6.26278 6.29981 6.34418 6.40009 6.46545 6.54341 6.67413 6.76185 6.88002 7.24087 7.56446 7.68848 7.74509 7.83898 8.39685 8.44573 9.15295 9.79251 10.34561 11.24627 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009522 B = 0.005583 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2939.736716 B = 5013.679490 C = 6257.804011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.028 4.028 3 C -0.139 4.139 4 C 0.100 3.900 5 N -0.245 5.245 6 N -0.264 5.264 7 S 0.404 5.596 8 C -0.269 4.269 9 C 0.600 3.400 10 O -0.518 6.518 11 N -0.685 5.685 12 C 0.125 3.875 13 H 0.082 0.918 14 C 0.159 3.841 15 N -0.587 5.587 16 C -0.256 4.256 17 H 0.064 0.936 18 C 0.009 3.991 19 N -0.896 5.896 20 Si 0.894 3.106 21 H -0.286 1.286 22 H -0.289 1.289 23 H -0.282 1.282 24 C 0.141 3.859 25 C -0.130 4.130 26 C -0.095 4.095 27 H 0.081 0.919 28 C -0.146 4.146 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.125 0.875 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.394 0.606 37 H 0.099 0.901 38 H 0.029 0.971 39 H 0.255 0.745 40 H 0.054 0.946 41 H 0.019 0.981 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.049 0.951 45 H 0.052 0.948 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.679 9.287 5.493 13.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.050 4.050 3 C -0.197 4.197 4 C -0.047 4.047 5 N -0.111 5.111 6 N -0.244 5.244 7 S 0.540 5.460 8 C -0.410 4.410 9 C 0.382 3.618 10 O -0.396 6.396 11 N -0.336 5.336 12 C 0.020 3.980 13 H 0.100 0.900 14 C 0.032 3.968 15 N -0.310 5.310 16 C -0.386 4.386 17 H 0.082 0.918 18 C -0.190 4.190 19 N -0.539 5.539 20 Si 0.724 3.276 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.208 1.208 24 C 0.015 3.985 25 C -0.170 4.170 26 C -0.114 4.114 27 H 0.100 0.900 28 C -0.203 4.203 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.143 0.857 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.229 0.771 37 H 0.117 0.883 38 H 0.047 0.953 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.037 0.963 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.367 9.517 6.553 14.266 hybrid contribution -1.073 -0.062 -0.449 1.165 sum 7.294 9.455 6.104 13.411 Atomic orbital electron populations 1.21801 0.93321 1.02532 1.02336 1.20151 0.96608 0.95854 0.92381 1.21785 1.00961 0.94474 1.02432 1.22880 0.94820 0.92952 0.94087 1.70487 1.19854 1.24538 0.96249 1.78857 1.13852 1.07372 1.24302 1.82514 1.39944 1.28307 0.95237 1.27947 1.09736 1.03360 0.99973 1.16329 0.78963 0.80452 0.86023 1.90744 1.57933 1.67671 1.23231 1.45749 1.50203 1.26899 1.10710 1.21940 0.94767 0.94409 0.86870 0.90025 1.21229 0.97714 0.88276 0.89608 1.43980 1.02195 1.40022 1.44767 1.19041 0.82641 1.41446 0.95468 0.91831 1.24983 0.97889 1.01292 0.94876 1.69980 1.29032 1.52279 1.02619 0.86509 0.84580 0.78096 0.78455 1.21246 1.21455 1.20809 1.20947 0.88069 0.92480 0.96999 1.22103 0.99414 0.98297 0.97180 1.21331 0.94136 0.96331 0.99561 0.90044 1.21865 0.98364 0.99004 1.01073 0.92076 0.91501 0.92392 0.85749 0.92791 0.91553 0.92064 0.77056 0.88339 0.95283 0.93449 0.92703 0.96264 0.92854 0.92512 0.93198 0.92935 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.16 37.16 0.34 -1.58 16 2 C -0.03 -0.40 3.25 -91.77 -0.30 -0.70 16 3 C -0.14 -1.62 9.16 37.16 0.34 -1.28 16 4 C 0.10 1.58 5.53 -82.84 -0.46 1.12 16 5 N -0.25 -3.93 11.51 33.42 0.38 -3.55 16 6 N -0.26 -4.05 12.51 60.35 0.75 -3.30 16 7 S 0.40 5.44 23.05 -107.50 -2.48 2.96 16 8 C -0.27 -4.34 6.81 -35.95 -0.24 -4.59 16 9 C 0.60 10.74 7.77 -12.63 -0.10 10.64 16 10 O -0.52 -10.52 14.21 5.26 0.07 -10.44 16 11 N -0.69 -11.38 4.25 -54.84 -0.23 -11.62 16 12 C 0.13 2.18 2.24 -67.81 -0.15 2.03 16 13 H 0.08 1.44 7.58 -51.93 -0.39 1.04 16 14 C 0.16 3.55 4.91 -3.71 -0.02 3.53 16 15 N -0.59 -13.40 2.91 -172.32 -0.50 -13.90 16 16 C -0.26 -6.64 9.59 -15.06 -0.14 -6.79 16 17 H 0.06 1.62 7.89 -52.48 -0.41 1.21 16 18 C 0.01 0.25 4.91 -17.43 -0.09 0.16 16 19 N -0.90 -25.55 11.19 55.49 0.62 -24.93 16 20 Si 0.89 21.74 29.59 -169.99 -5.03 16.71 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 C 0.14 2.63 6.52 -3.71 -0.02 2.61 16 25 C -0.13 -1.88 5.20 -26.60 -0.14 -2.02 16 26 C -0.09 -1.34 2.48 -90.58 -0.22 -1.56 16 27 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 28 C -0.15 -1.68 9.05 37.15 0.34 -1.34 16 29 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.12 2.01 5.49 -51.93 -0.29 1.72 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.39 5.89 6.07 -40.82 -0.25 5.64 16 37 H 0.10 2.62 6.03 -51.93 -0.31 2.30 16 38 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.05 1.01 7.93 -51.93 -0.41 0.60 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.05 0.75 6.40 -51.93 -0.33 0.42 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.05 0.56 7.55 -51.93 -0.39 0.17 16 45 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 378.05 15.07 5.70 5.70 Total: -1.00 -29.87 378.05 -8.58 -38.45 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -7.00 Total: 3.69 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -0.87 Total: 0.23 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: 1.03 Total: -57.29 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.07 Total: -10.44 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Atomic # 16 Polarization: 5.44 SS G_CDS: -2.48 Total: 2.96 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.87 -8.58 -38.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968454686.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.795 kcal (2) G-P(sol) polarization free energy of solvation -29.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds