Wall clock time and date at job start Tue Mar 31 2020 22:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47284 * 2 1 4 4 C 1.50704 * 109.47157 * 120.00040 * 2 1 3 5 5 N 1.31238 * 124.05741 * 300.17283 * 4 2 1 6 6 N 1.27341 * 120.03785 * 180.33879 * 5 4 2 7 7 S 1.56638 * 109.73933 * 359.71106 * 6 5 4 8 8 C 1.38248 * 124.05364 * 119.99344 * 4 2 1 9 9 C 1.47175 * 128.47572 * 0.02562 * 8 4 2 10 10 O 1.21625 * 119.99841 * 359.68884 * 9 8 4 11 11 N 1.34775 * 119.99706 * 179.69436 * 9 8 4 12 12 C 1.46504 * 119.99549 * 179.71838 * 11 9 8 13 13 H 1.08996 * 109.49927 * 35.06949 * 12 11 9 14 14 C 1.53191 * 109.50229 * 275.00149 * 12 11 9 15 15 N 1.46930 * 108.77574 * 294.68527 * 14 12 11 16 16 C 1.36935 * 120.63001 * 126.36740 * 15 14 12 17 17 H 1.08006 * 120.00347 * 207.69253 * 16 15 14 18 18 C 1.38814 * 120.00233 * 27.68533 * 16 15 14 19 19 N 1.31627 * 119.99508 * 17.36372 * 18 16 15 20 20 Si 1.86799 * 120.00434 * 197.36218 * 18 16 15 21 21 H 1.48502 * 109.46949 * 60.00117 * 20 18 16 22 22 H 1.48500 * 109.47123 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46932 * 300.00229 * 20 18 16 24 24 C 1.46922 * 118.73936 * 306.39032 * 15 14 12 25 25 C 1.53200 * 108.77485 * 53.60960 * 24 15 14 26 26 C 1.53040 * 109.49342 * 155.16200 * 12 11 9 27 27 H 1.09004 * 109.45691 * 178.60620 * 26 12 11 28 28 C 1.52994 * 109.46572 * 298.56830 * 26 12 11 29 29 H 1.09009 * 109.46854 * 299.99561 * 1 2 3 30 30 H 1.08995 * 109.47307 * 59.99796 * 1 2 3 31 31 H 1.08995 * 109.47398 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46783 * 239.99593 * 2 1 3 33 33 H 1.08999 * 109.46738 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47115 * 300.00322 * 3 2 1 35 35 H 1.08999 * 109.46816 * 60.00217 * 3 2 1 36 36 H 0.97002 * 120.00416 * 0.02562 * 11 9 8 37 37 H 1.09000 * 109.58307 * 54.47058 * 14 12 11 38 38 H 1.08998 * 109.58925 * 174.75470 * 14 12 11 39 39 H 0.96999 * 119.99532 * 179.97438 * 19 18 16 40 40 H 1.08997 * 109.59083 * 173.39413 * 24 15 14 41 41 H 1.09000 * 109.58872 * 293.82357 * 24 15 14 42 42 H 1.08993 * 109.49856 * 65.31474 * 25 24 15 43 43 H 1.08998 * 109.49508 * 185.41559 * 25 24 15 44 44 H 1.09000 * 109.46874 * 59.99708 * 28 26 12 45 45 H 1.09000 * 109.47849 * 179.97438 * 28 26 12 46 46 H 1.09000 * 109.46925 * 300.00259 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7621 -0.3340 2.4583 6 7 2.2332 -0.9883 3.4440 7 16 3.0888 -2.1912 2.9200 8 6 2.8303 -1.8390 1.2013 9 6 3.3451 -2.5664 0.0300 10 8 3.0694 -2.1857 -1.0918 11 7 4.1218 -3.6545 0.2005 12 6 4.6292 -4.3822 -0.9655 13 1 4.8444 -3.6776 -1.7687 14 6 3.5761 -5.3896 -1.4376 15 7 3.3926 -6.4065 -0.3930 16 6 2.1456 -6.6819 0.1011 17 1 2.0341 -7.0538 1.1090 18 6 1.0247 -6.4831 -0.6932 19 7 1.1551 -6.3654 -1.9977 20 14 -0.6686 -6.3827 0.0891 21 1 -0.7039 -5.2504 1.0492 22 1 -1.6900 -6.1686 -0.9674 23 1 -0.9580 -7.6499 0.8073 24 6 4.5726 -7.1218 0.1115 25 6 5.6146 -6.0950 0.5663 26 6 5.9091 -5.1294 -0.5839 27 1 6.2725 -5.6904 -1.4450 28 6 6.9749 -4.1235 -0.1446 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 4.3413 -3.9585 1.0951 37 1 2.6321 -4.8747 -1.6161 38 1 3.9126 -5.8655 -2.3587 39 1 0.3718 -6.2268 -2.5528 40 1 4.2862 -7.7499 0.9551 41 1 4.9916 -7.7408 -0.6818 42 1 5.2278 -5.5375 1.4193 43 1 6.5315 -6.6098 0.8531 44 1 6.6117 -3.5619 0.7160 45 1 7.8865 -4.6554 0.1276 46 1 7.1858 -3.4364 -0.9641 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968454686.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:28 Heat of formation + Delta-G solvation = 25.082767 kcal Electronic energy + Delta-G solvation = -28900.521697 eV Core-core repulsion = 25145.171114 eV Total energy + Delta-G solvation = -3755.350582 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.20557 -41.06197 -39.11621 -36.60820 -35.93585 -34.46473 -32.88005 -32.37279 -30.78234 -29.00215 -28.39252 -28.10408 -25.89556 -24.77512 -23.60359 -22.87728 -22.69961 -21.56533 -20.37048 -19.11263 -18.67698 -18.49184 -17.12937 -16.90548 -16.76757 -16.22821 -15.87819 -15.78453 -15.54045 -15.22679 -15.00765 -14.78460 -14.59649 -14.16325 -14.12250 -14.04428 -13.60497 -13.43719 -13.13717 -13.08718 -13.02650 -12.72251 -12.62888 -12.49656 -12.29032 -12.27939 -12.23258 -12.01325 -11.92288 -11.55450 -11.47360 -11.28404 -11.05860 -10.93782 -10.92148 -10.82067 -10.53643 -10.06090 -8.63733 -7.87050 -5.29960 -1.38287 -0.29044 0.36969 0.81005 1.37453 1.40417 1.45037 1.84501 2.10007 2.46321 2.75145 3.28647 3.39457 3.63747 3.71171 3.89606 3.96294 4.01531 4.11681 4.12703 4.14441 4.52740 4.63073 4.69693 4.73435 4.74891 4.82428 4.87027 4.89111 4.91006 4.98941 5.08297 5.10891 5.20764 5.25585 5.26718 5.28205 5.36261 5.48706 5.51875 5.59629 5.67340 5.73893 6.38981 6.39964 6.55123 7.08148 7.15322 7.88972 8.38775 9.17684 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009522 B = 0.005583 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2939.736716 B = 5013.679490 C = 6257.804011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.033 4.033 3 C -0.130 4.130 4 C 0.099 3.901 5 N -0.259 5.259 6 N -0.279 5.279 7 S 0.486 5.514 8 C -0.305 4.305 9 C 0.598 3.402 10 O -0.550 6.550 11 N -0.678 5.678 12 C 0.137 3.863 13 H 0.076 0.924 14 C 0.168 3.832 15 N -0.600 5.600 16 C -0.248 4.248 17 H 0.070 0.930 18 C -0.045 4.045 19 N -0.929 5.929 20 Si 0.942 3.058 21 H -0.287 1.287 22 H -0.300 1.300 23 H -0.270 1.270 24 C 0.135 3.865 25 C -0.119 4.119 26 C -0.088 4.088 27 H 0.082 0.918 28 C -0.138 4.138 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.032 0.968 32 H 0.103 0.897 33 H 0.052 0.948 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.404 0.596 37 H 0.052 0.948 38 H 0.003 0.997 39 H 0.245 0.755 40 H 0.057 0.943 41 H 0.015 0.985 42 H 0.061 0.939 43 H 0.093 0.907 44 H 0.055 0.945 45 H 0.077 0.923 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.649 9.784 7.857 16.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.055 4.055 3 C -0.188 4.188 4 C -0.049 4.049 5 N -0.124 5.124 6 N -0.260 5.260 7 S 0.623 5.377 8 C -0.446 4.446 9 C 0.381 3.619 10 O -0.430 6.430 11 N -0.328 5.328 12 C 0.031 3.969 13 H 0.094 0.906 14 C 0.041 3.959 15 N -0.323 5.323 16 C -0.378 4.378 17 H 0.087 0.913 18 C -0.241 4.241 19 N -0.575 5.575 20 Si 0.772 3.228 21 H -0.214 1.214 22 H -0.226 1.226 23 H -0.196 1.196 24 C 0.010 3.990 25 C -0.158 4.158 26 C -0.107 4.107 27 H 0.100 0.900 28 C -0.195 4.195 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.051 0.949 32 H 0.121 0.879 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.241 0.759 37 H 0.070 0.930 38 H 0.021 0.979 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.033 0.967 42 H 0.080 0.920 43 H 0.111 0.889 44 H 0.074 0.926 45 H 0.095 0.905 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.374 9.997 8.971 16.972 hybrid contribution -1.636 -0.304 -1.135 2.014 sum 8.738 9.693 7.837 15.222 Atomic orbital electron populations 1.21782 0.92810 1.01260 1.03706 1.20197 0.97042 0.97204 0.91068 1.21738 1.00860 0.92654 1.03562 1.23143 0.94316 0.92845 0.94580 1.70552 1.20638 1.25110 0.96095 1.78653 1.14335 1.08275 1.24742 1.82132 1.37438 1.25929 0.92221 1.27857 1.11255 1.04155 1.01291 1.16582 0.78523 0.80559 0.86187 1.90729 1.58919 1.68561 1.24780 1.45633 1.49886 1.26414 1.10907 1.21651 0.94740 0.93209 0.87290 0.90575 1.20926 0.97012 0.88889 0.89113 1.44179 1.02666 1.40880 1.44625 1.19371 0.83917 1.39123 0.95425 0.91253 1.25580 1.00628 1.02650 0.95202 1.70136 1.28885 1.54772 1.03716 0.85712 0.81509 0.78237 0.77335 1.21417 1.22633 1.19590 1.21161 0.87530 0.93575 0.96731 1.21997 0.99397 0.97270 0.97126 1.21301 0.92981 0.96689 0.99747 0.89975 1.21789 0.98077 0.98354 1.01270 0.91386 0.89439 0.94899 0.87880 0.92873 0.89652 0.91642 0.75910 0.92957 0.97881 0.94552 0.92467 0.96701 0.92031 0.88862 0.92626 0.90456 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 9.16 71.98 0.66 -3.06 16 2 C -0.03 -0.95 3.25 -11.54 -0.04 -0.99 16 3 C -0.13 -2.91 9.16 71.98 0.66 -2.25 16 4 C 0.10 3.11 5.53 42.65 0.24 3.35 16 5 N -0.26 -8.02 11.51 -48.18 -0.55 -8.57 16 6 N -0.28 -8.08 12.51 37.02 0.46 -7.61 16 7 S 0.49 12.03 23.05 -56.49 -1.30 10.73 16 8 C -0.30 -9.66 6.81 24.62 0.17 -9.49 16 9 C 0.60 21.53 7.77 86.59 0.67 22.21 16 10 O -0.55 -23.21 14.21 -4.11 -0.06 -23.27 16 11 N -0.68 -21.96 4.25 -445.68 -1.89 -23.85 16 12 C 0.14 4.72 2.24 45.07 0.10 4.82 16 13 H 0.08 2.72 7.58 -2.39 -0.02 2.71 16 14 C 0.17 7.75 4.91 86.36 0.42 8.18 16 15 N -0.60 -27.46 2.91 -699.08 -2.04 -29.50 16 16 C -0.25 -12.89 9.59 84.03 0.81 -12.09 16 17 H 0.07 3.48 7.89 -2.91 -0.02 3.45 16 18 C -0.04 -2.49 4.91 84.86 0.42 -2.07 16 19 N -0.93 -55.40 11.19 21.65 0.24 -55.16 16 20 Si 0.94 45.58 29.59 68.60 2.03 47.61 16 21 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 22 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 23 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 24 C 0.13 4.80 6.52 86.37 0.56 5.36 16 25 C -0.12 -3.01 5.20 30.68 0.16 -2.85 16 26 C -0.09 -2.28 2.48 -10.77 -0.03 -2.30 16 27 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 28 C -0.14 -2.63 9.05 71.98 0.65 -1.98 16 29 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.10 3.46 5.49 -2.39 -0.01 3.45 16 33 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.40 11.19 6.07 -92.71 -0.56 10.62 16 37 H 0.05 2.93 6.03 -2.39 -0.01 2.91 16 38 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 39 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 40 H 0.06 1.99 7.93 -2.39 -0.02 1.97 16 41 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.06 1.48 6.40 -2.39 -0.02 1.47 16 43 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.05 1.02 7.55 -2.39 -0.02 1.00 16 45 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -67.79 378.05 2.78 -65.01 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.43 Total: 17.79 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 5.45 Total: 6.82 kcal Atomic # 7 Polarization: -120.91 SS G_CDS: -3.78 Total: -124.69 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.06 Total: -23.27 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Atomic # 16 Polarization: 12.03 SS G_CDS: -1.30 Total: 10.73 kcal Total: -67.79 2.78 -65.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968454686.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.098 kcal (2) G-P(sol) polarization free energy of solvation -67.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds