Wall clock time and date at job start Tue Mar 31 2020 21:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.87757 * 2 1 4 4 C 1.54428 * 109.87583 * 238.83364 * 2 1 3 5 5 C 1.55156 * 102.89529 * 262.77036 * 4 2 1 6 6 H 1.09002 * 111.00677 * 82.59320 * 5 4 2 7 7 N 1.46504 * 111.00370 * 206.40735 * 5 4 2 8 8 C 1.36939 * 119.99777 * 201.81715 * 7 5 4 9 9 H 1.07997 * 120.00123 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99689 * 179.97438 * 8 7 5 11 11 N 1.31616 * 119.99902 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99892 * 179.97438 * 10 8 7 13 13 H 1.48508 * 109.46678 * 90.00025 * 12 10 8 14 14 H 1.48503 * 109.47423 * 210.00123 * 12 10 8 15 15 H 1.48499 * 109.47068 * 330.00487 * 12 10 8 16 16 C 1.54906 * 101.61451 * 324.49736 * 5 4 2 17 17 N 1.47023 * 109.87967 * 121.01831 * 2 1 3 18 18 C 1.34772 * 125.64732 * 300.50462 * 17 2 1 19 19 O 1.21280 * 119.99969 * 359.97438 * 18 17 2 20 20 C 1.50704 * 119.99675 * 179.97438 * 18 17 2 21 21 C 1.50701 * 109.47006 * 180.02562 * 20 18 17 22 22 C 1.38265 * 119.99895 * 269.73088 * 21 20 18 23 23 C 1.38207 * 119.99804 * 179.74358 * 22 21 20 24 24 C 1.38257 * 119.99994 * 0.52623 * 23 22 21 25 25 C 1.38214 * 120.00017 * 359.74782 * 24 23 22 26 26 C 1.50704 * 120.00043 * 180.02562 * 25 24 23 27 27 F 1.39898 * 109.47266 * 119.97473 * 26 25 24 28 28 F 1.39896 * 109.46799 * 239.97951 * 26 25 24 29 29 C 1.38211 * 119.99954 * 90.00117 * 21 20 18 30 30 H 1.09001 * 109.47052 * 300.44012 * 1 2 3 31 31 H 1.09005 * 109.46651 * 60.43586 * 1 2 3 32 32 H 1.08996 * 109.47350 * 180.43879 * 1 2 3 33 33 H 1.09001 * 110.72431 * 144.42422 * 4 2 1 34 34 H 1.09002 * 110.76272 * 21.12064 * 4 2 1 35 35 H 0.96998 * 119.99833 * 21.81558 * 7 5 4 36 36 H 0.97008 * 120.00082 * 179.97438 * 11 10 8 37 37 H 1.09008 * 110.36767 * 155.86672 * 16 5 4 38 38 H 1.09000 * 110.37413 * 278.08173 * 16 5 4 39 39 H 1.08997 * 109.47305 * 300.00226 * 20 18 17 40 40 H 1.09001 * 109.47068 * 60.00996 * 20 18 17 41 41 H 1.08003 * 119.99822 * 359.97438 * 22 21 20 42 42 H 1.07997 * 120.00142 * 180.29376 * 23 22 21 43 43 H 1.08005 * 119.99998 * 179.76907 * 24 23 22 44 44 H 1.09005 * 109.46964 * 359.97438 * 26 25 24 45 45 H 1.07995 * 120.00081 * 0.02562 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0551 -0.7516 -1.2427 5 6 2.3518 -2.1705 -0.6894 6 1 1.4451 -2.7746 -0.6566 7 7 3.3933 -2.8342 -1.4775 8 6 3.4966 -4.1996 -1.4639 9 1 2.8105 -4.7872 -0.8720 10 6 4.4831 -4.8284 -2.2111 11 7 5.3195 -4.1123 -2.9321 12 14 4.6244 -6.6910 -2.1920 13 1 3.7868 -7.2620 -3.2772 14 1 6.0415 -7.0821 -2.4025 15 1 4.1573 -7.2094 -0.8812 16 6 2.8568 -1.8489 0.7392 17 7 2.0300 -0.7125 1.1849 18 6 1.7743 -0.3819 2.4662 19 8 1.0772 0.5783 2.7171 20 6 2.3546 -1.2053 3.5870 21 6 1.9204 -0.6295 4.9103 22 6 2.6943 0.3322 5.5331 23 6 2.2934 0.8641 6.7440 24 6 1.1240 0.4267 7.3380 25 6 0.3533 -0.5388 6.7181 26 6 -0.9216 -1.0152 7.3652 27 9 -2.0014 -0.7574 6.5138 28 9 -0.8362 -2.3905 7.6069 29 6 0.7514 -1.0668 5.5040 30 1 -0.3633 0.5207 0.8860 31 1 -0.3633 0.5071 -0.8939 32 1 -0.3634 -1.0276 0.0079 33 1 2.9660 -0.2859 -1.6188 34 1 1.2923 -0.7927 -2.0203 35 1 4.0097 -2.3064 -2.0089 36 1 6.0092 -4.5517 -3.4539 37 1 2.7087 -2.7062 1.3959 38 1 3.9096 -1.5677 0.7152 39 1 2.0000 -2.2327 3.5043 40 1 3.4427 -1.1901 3.5234 41 1 3.6103 0.6704 5.0714 42 1 2.8955 1.6187 7.2282 43 1 0.8126 0.8396 8.2861 44 1 -1.0690 -0.4890 8.3084 45 1 0.1494 -1.8214 5.0198 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989169306.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:46 Heat of formation + Delta-G solvation = -102.125449 kcal Electronic energy + Delta-G solvation = -28912.735558 eV Core-core repulsion = 24565.735675 eV Total energy + Delta-G solvation = -4346.999882 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.19573 -47.18352 -40.30117 -39.31248 -37.37454 -34.23100 -33.48781 -32.00355 -31.58955 -31.29271 -28.43693 -27.83938 -26.32842 -25.47578 -23.96694 -22.76974 -22.10029 -21.19174 -20.11031 -18.77234 -17.59700 -17.45625 -17.41280 -17.32626 -16.90603 -16.35124 -15.81655 -15.37359 -15.17040 -14.54617 -14.46672 -14.14391 -14.07332 -13.60353 -13.55696 -13.35719 -13.24496 -13.11156 -13.04899 -12.98034 -12.64029 -12.48984 -12.23037 -12.13535 -11.86739 -11.72344 -11.37653 -11.22338 -11.05438 -11.00096 -10.79147 -10.67403 -10.30213 -10.04042 -9.83016 -9.71331 -9.25465 -9.08783 -8.96202 -8.38251 -7.14665 -5.90244 -3.21438 0.88994 1.09371 2.79023 3.09314 3.36253 3.41996 3.43359 3.45873 3.49926 3.88880 4.21231 4.46724 4.51623 4.68675 4.71575 4.78124 4.80937 5.03396 5.08423 5.10164 5.15221 5.25143 5.30306 5.40392 5.44219 5.55818 5.59127 5.64082 5.74051 5.82666 5.83010 6.04603 6.08119 6.08812 6.10813 6.19187 6.25994 6.30999 6.41547 6.50005 6.60584 6.65180 6.80813 7.58397 7.78066 8.26897 8.35055 9.39318 9.92636 10.27477 11.31638 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013158 B = 0.002548 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.496818 B =10985.947760 C =11710.787191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 H 0.069 0.931 4 C -0.137 4.137 5 C 0.174 3.826 6 H 0.066 0.934 7 N -0.712 5.712 8 C -0.250 4.250 9 H 0.073 0.927 10 C -0.008 4.008 11 N -0.929 5.929 12 Si 0.908 3.092 13 H -0.289 1.289 14 H -0.291 1.291 15 H -0.281 1.281 16 C 0.071 3.929 17 N -0.609 5.609 18 C 0.529 3.471 19 O -0.544 6.544 20 C -0.103 4.103 21 C -0.059 4.059 22 C -0.083 4.083 23 C -0.121 4.121 24 C -0.090 4.090 25 C -0.172 4.172 26 C 0.314 3.686 27 F -0.199 7.199 28 F -0.201 7.201 29 C -0.064 4.064 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.387 0.613 36 H 0.257 0.743 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.128 0.872 44 H 0.117 0.883 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.945 10.126 19.290 23.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.087 0.913 4 C -0.176 4.176 5 C 0.061 3.939 6 H 0.084 0.916 7 N -0.352 5.352 8 C -0.381 4.381 9 H 0.091 0.909 10 C -0.204 4.204 11 N -0.576 5.576 12 Si 0.739 3.261 13 H -0.216 1.216 14 H -0.217 1.217 15 H -0.206 1.206 16 C -0.055 4.055 17 N -0.343 5.343 18 C 0.317 3.683 19 O -0.422 6.422 20 C -0.142 4.142 21 C -0.059 4.059 22 C -0.101 4.101 23 C -0.139 4.139 24 C -0.108 4.108 25 C -0.173 4.173 26 C 0.260 3.740 27 F -0.180 7.180 28 F -0.182 7.182 29 C -0.082 4.082 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.222 0.778 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.145 0.855 42 H 0.147 0.853 43 H 0.145 0.855 44 H 0.134 0.866 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.346 10.413 19.468 23.603 hybrid contribution 0.407 -1.024 -0.314 1.146 sum -7.938 9.389 19.154 22.761 Atomic orbital electron populations 1.22134 0.95069 1.02277 1.02428 1.21501 0.94364 0.95864 0.84677 0.91317 1.23023 1.01708 0.97004 0.95867 1.21271 0.92770 0.91259 0.88552 0.91623 1.42329 1.35230 1.04258 1.53389 1.19242 1.12377 0.82666 1.23791 0.90948 1.24772 0.98115 0.98046 0.99505 1.69658 1.20505 1.34310 1.33166 0.86187 0.76965 0.85231 0.77752 1.21572 1.21689 1.20610 1.23536 0.95014 0.87034 0.99950 1.48641 1.50309 1.30882 1.04493 1.20028 0.80900 0.85000 0.82353 1.90682 1.39009 1.29030 1.83445 1.20693 1.02998 1.00442 0.90092 1.19330 0.94774 0.96876 0.94922 1.21172 0.99427 0.94745 0.94769 1.21061 0.96676 1.00300 0.95874 1.20870 0.94653 0.95718 0.99559 1.20251 0.97495 1.01576 0.97931 1.20387 0.82750 0.78185 0.92656 1.93031 1.57365 1.93763 1.73845 1.93016 1.96486 1.33723 1.94973 1.20797 0.95290 0.98523 0.93628 0.91480 0.92007 0.92475 0.90577 0.90136 0.77838 0.93292 0.91276 0.91115 0.87705 0.87632 0.85533 0.85284 0.85455 0.86617 0.85631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.06 37.16 0.34 -1.89 16 2 C 0.14 2.03 3.50 -66.89 -0.23 1.80 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.14 -2.09 6.14 -24.84 -0.15 -2.24 16 5 C 0.17 3.13 3.70 -65.78 -0.24 2.89 16 6 H 0.07 1.22 8.11 -51.93 -0.42 0.80 16 7 N -0.71 -16.33 5.26 -51.35 -0.27 -16.60 16 8 C -0.25 -6.44 9.97 -15.06 -0.15 -6.59 16 9 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 10 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 11 N -0.93 -26.63 13.06 55.49 0.72 -25.91 16 12 Si 0.91 21.31 29.55 -169.99 -5.02 16.29 16 13 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 C 0.07 1.13 6.39 -2.53 -0.02 1.11 16 17 N -0.61 -9.16 3.08 -162.95 -0.50 -9.66 16 18 C 0.53 7.96 7.62 -10.99 -0.08 7.87 16 19 O -0.54 -9.67 14.93 5.56 0.08 -9.59 16 20 C -0.10 -1.22 4.84 -29.03 -0.14 -1.36 16 21 C -0.06 -0.70 4.37 -104.62 -0.46 -1.16 16 22 C -0.08 -0.88 9.70 -39.58 -0.38 -1.26 16 23 C -0.12 -1.08 10.05 -39.59 -0.40 -1.48 16 24 C -0.09 -0.78 9.67 -39.58 -0.38 -1.16 16 25 C -0.17 -1.80 5.37 -104.62 -0.56 -2.36 16 26 C 0.31 2.89 5.45 36.01 0.20 3.09 16 27 F -0.20 -2.33 17.26 2.25 0.04 -2.29 16 28 F -0.20 -2.18 17.26 2.25 0.04 -2.14 16 29 C -0.06 -0.78 9.25 -39.58 -0.37 -1.14 16 30 H 0.07 1.03 6.74 -51.93 -0.35 0.68 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 1.17 8.00 -51.93 -0.42 0.76 16 34 H 0.08 1.16 7.83 -51.93 -0.41 0.75 16 35 H 0.39 9.48 7.73 -40.82 -0.32 9.17 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.07 1.06 7.48 -51.92 -0.39 0.67 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.10 1.14 7.79 -51.93 -0.40 0.74 16 40 H 0.11 1.09 8.08 -51.93 -0.42 0.67 16 41 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 42 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 43 H 0.13 0.69 7.95 -52.48 -0.42 0.27 16 44 H 0.12 0.61 7.88 -51.93 -0.41 0.20 16 45 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 382.76 15.07 5.77 5.77 Total: -1.00 -31.31 382.76 -8.73 -40.04 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -6.45 Total: 8.28 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -3.13 Total: -4.19 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: -0.05 Total: -52.16 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.08 Total: -9.59 kcal Atomic # 9 Polarization: -4.51 SS G_CDS: 0.08 Total: -4.43 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.31 -8.73 -40.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989169306.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.086 kcal (2) G-P(sol) polarization free energy of solvation -31.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds