Wall clock time and date at job start Tue Mar 31 2020 21:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.87757 * 2 1 4 4 C 1.54428 * 109.87583 * 238.83364 * 2 1 3 5 5 C 1.55156 * 102.89529 * 262.77036 * 4 2 1 6 6 H 1.09002 * 111.00677 * 82.59320 * 5 4 2 7 7 N 1.46504 * 111.00370 * 206.40735 * 5 4 2 8 8 C 1.36939 * 119.99777 * 201.81715 * 7 5 4 9 9 H 1.07997 * 120.00123 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99689 * 179.97438 * 8 7 5 11 11 N 1.31616 * 119.99902 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99892 * 179.97438 * 10 8 7 13 13 H 1.48508 * 109.46678 * 90.00025 * 12 10 8 14 14 H 1.48503 * 109.47423 * 210.00123 * 12 10 8 15 15 H 1.48499 * 109.47068 * 330.00487 * 12 10 8 16 16 C 1.54906 * 101.61451 * 324.49736 * 5 4 2 17 17 N 1.47023 * 109.87967 * 121.01831 * 2 1 3 18 18 C 1.34772 * 125.64732 * 300.50462 * 17 2 1 19 19 O 1.21280 * 119.99969 * 359.97438 * 18 17 2 20 20 C 1.50704 * 119.99675 * 179.97438 * 18 17 2 21 21 C 1.50701 * 109.47006 * 180.02562 * 20 18 17 22 22 C 1.38265 * 119.99895 * 269.73088 * 21 20 18 23 23 C 1.38207 * 119.99804 * 179.74358 * 22 21 20 24 24 C 1.38257 * 119.99994 * 0.52623 * 23 22 21 25 25 C 1.38214 * 120.00017 * 359.74782 * 24 23 22 26 26 C 1.50704 * 120.00043 * 180.02562 * 25 24 23 27 27 F 1.39898 * 109.47266 * 119.97473 * 26 25 24 28 28 F 1.39896 * 109.46799 * 239.97951 * 26 25 24 29 29 C 1.38211 * 119.99954 * 90.00117 * 21 20 18 30 30 H 1.09001 * 109.47052 * 300.44012 * 1 2 3 31 31 H 1.09005 * 109.46651 * 60.43586 * 1 2 3 32 32 H 1.08996 * 109.47350 * 180.43879 * 1 2 3 33 33 H 1.09001 * 110.72431 * 144.42422 * 4 2 1 34 34 H 1.09002 * 110.76272 * 21.12064 * 4 2 1 35 35 H 0.96998 * 119.99833 * 21.81558 * 7 5 4 36 36 H 0.97008 * 120.00082 * 179.97438 * 11 10 8 37 37 H 1.09008 * 110.36767 * 155.86672 * 16 5 4 38 38 H 1.09000 * 110.37413 * 278.08173 * 16 5 4 39 39 H 1.08997 * 109.47305 * 300.00226 * 20 18 17 40 40 H 1.09001 * 109.47068 * 60.00996 * 20 18 17 41 41 H 1.08003 * 119.99822 * 359.97438 * 22 21 20 42 42 H 1.07997 * 120.00142 * 180.29376 * 23 22 21 43 43 H 1.08005 * 119.99998 * 179.76907 * 24 23 22 44 44 H 1.09005 * 109.46964 * 359.97438 * 26 25 24 45 45 H 1.07995 * 120.00081 * 0.02562 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0551 -0.7516 -1.2427 5 6 2.3518 -2.1705 -0.6894 6 1 1.4451 -2.7746 -0.6566 7 7 3.3933 -2.8342 -1.4775 8 6 3.4966 -4.1996 -1.4639 9 1 2.8105 -4.7872 -0.8720 10 6 4.4831 -4.8284 -2.2111 11 7 5.3195 -4.1123 -2.9321 12 14 4.6244 -6.6910 -2.1920 13 1 3.7868 -7.2620 -3.2772 14 1 6.0415 -7.0821 -2.4025 15 1 4.1573 -7.2094 -0.8812 16 6 2.8568 -1.8489 0.7392 17 7 2.0300 -0.7125 1.1849 18 6 1.7743 -0.3819 2.4662 19 8 1.0772 0.5783 2.7171 20 6 2.3546 -1.2053 3.5870 21 6 1.9204 -0.6295 4.9103 22 6 2.6943 0.3322 5.5331 23 6 2.2934 0.8641 6.7440 24 6 1.1240 0.4267 7.3380 25 6 0.3533 -0.5388 6.7181 26 6 -0.9216 -1.0152 7.3652 27 9 -2.0014 -0.7574 6.5138 28 9 -0.8362 -2.3905 7.6069 29 6 0.7514 -1.0668 5.5040 30 1 -0.3633 0.5207 0.8860 31 1 -0.3633 0.5071 -0.8939 32 1 -0.3634 -1.0276 0.0079 33 1 2.9660 -0.2859 -1.6188 34 1 1.2923 -0.7927 -2.0203 35 1 4.0097 -2.3064 -2.0089 36 1 6.0092 -4.5517 -3.4539 37 1 2.7087 -2.7062 1.3959 38 1 3.9096 -1.5677 0.7152 39 1 2.0000 -2.2327 3.5043 40 1 3.4427 -1.1901 3.5234 41 1 3.6103 0.6704 5.0714 42 1 2.8955 1.6187 7.2282 43 1 0.8126 0.8396 8.2861 44 1 -1.0690 -0.4890 8.3084 45 1 0.1494 -1.8214 5.0198 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989169306.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:45 Heat of formation + Delta-G solvation = -118.980234 kcal Electronic energy + Delta-G solvation = -28913.466436 eV Core-core repulsion = 24565.735675 eV Total energy + Delta-G solvation = -4347.730760 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.97176 -47.98136 -41.43001 -40.22585 -38.66988 -35.97317 -34.40052 -33.26554 -32.85156 -32.44140 -30.00033 -28.81268 -27.04909 -26.73727 -25.79431 -23.81405 -22.99088 -22.23774 -21.42681 -19.97902 -19.27896 -18.32616 -18.21543 -18.17135 -18.12363 -17.09811 -17.04892 -16.61205 -16.49805 -15.95199 -15.49692 -15.20606 -15.08090 -14.93996 -14.71599 -14.54064 -14.37112 -14.32467 -14.10751 -13.90503 -13.84298 -13.49276 -13.33754 -13.12567 -13.00877 -12.88760 -12.82628 -12.78012 -12.31024 -12.15650 -12.09306 -12.02219 -11.77454 -11.70796 -11.45614 -11.06786 -10.84347 -10.01582 -9.78094 -9.67419 -9.04767 -7.94431 -5.24236 0.13319 0.32069 1.51086 1.51657 1.59566 1.59875 1.96891 2.56668 2.66114 2.78403 3.26146 3.37542 3.45124 3.47768 3.74770 3.84964 3.92434 3.97420 3.99322 4.08125 4.11308 4.12649 4.24299 4.34668 4.36619 4.46574 4.51033 4.51854 4.61352 4.70744 4.76896 4.88151 4.91450 4.98167 5.02687 5.14188 5.24287 5.31048 5.34210 5.38208 5.46002 5.51920 5.55584 5.91204 6.26750 6.54192 7.13964 7.34743 8.05902 8.30112 9.28365 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013158 B = 0.002548 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.496818 B =10985.947760 C =11710.787191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.138 3.862 3 H 0.072 0.928 4 C -0.125 4.125 5 C 0.167 3.833 6 H 0.062 0.938 7 N -0.723 5.723 8 C -0.242 4.242 9 H 0.079 0.921 10 C -0.069 4.069 11 N -0.966 5.966 12 Si 0.968 3.032 13 H -0.290 1.290 14 H -0.298 1.298 15 H -0.268 1.268 16 C 0.085 3.915 17 N -0.609 5.609 18 C 0.528 3.472 19 O -0.571 6.571 20 C -0.098 4.098 21 C -0.079 4.079 22 C -0.097 4.097 23 C -0.122 4.122 24 C -0.084 4.084 25 C -0.185 4.185 26 C 0.308 3.692 27 F -0.217 7.217 28 F -0.213 7.213 29 C -0.091 4.091 30 H 0.050 0.950 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.377 0.623 36 H 0.251 0.749 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.111 0.889 40 H 0.121 0.879 41 H 0.136 0.864 42 H 0.159 0.841 43 H 0.167 0.833 44 H 0.165 0.835 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.414 10.828 21.401 25.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.035 3.965 3 H 0.090 0.910 4 C -0.164 4.164 5 C 0.056 3.944 6 H 0.080 0.920 7 N -0.362 5.362 8 C -0.374 4.374 9 H 0.097 0.903 10 C -0.261 4.261 11 N -0.616 5.616 12 Si 0.797 3.203 13 H -0.217 1.217 14 H -0.225 1.225 15 H -0.193 1.193 16 C -0.040 4.040 17 N -0.343 5.343 18 C 0.318 3.682 19 O -0.451 6.451 20 C -0.137 4.137 21 C -0.079 4.079 22 C -0.115 4.115 23 C -0.139 4.139 24 C -0.101 4.101 25 C -0.186 4.186 26 C 0.255 3.745 27 F -0.199 7.199 28 F -0.195 7.195 29 C -0.109 4.109 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.210 0.790 36 H 0.060 0.940 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.129 0.871 40 H 0.139 0.861 41 H 0.154 0.846 42 H 0.177 0.823 43 H 0.184 0.816 44 H 0.182 0.818 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.857 11.121 21.616 25.872 hybrid contribution 0.485 -1.146 -0.906 1.539 sum -8.372 9.975 20.710 24.464 Atomic orbital electron populations 1.22058 0.94285 1.02045 1.02680 1.21544 0.94933 0.95835 0.84177 0.91026 1.22922 1.02040 0.95028 0.96378 1.21415 0.91338 0.92356 0.89267 0.91969 1.42435 1.36113 1.03534 1.54122 1.19607 1.11399 0.84099 1.22275 0.90290 1.25490 0.98592 1.01839 1.00210 1.69799 1.21480 1.35621 1.34726 0.85230 0.76224 0.80815 0.78016 1.21732 1.22488 1.19266 1.23181 0.94593 0.87653 0.98619 1.48661 1.50178 1.30549 1.04887 1.20548 0.80241 0.84779 0.82652 1.90663 1.40272 1.30422 1.83766 1.20703 1.03689 1.00107 0.89204 1.19397 0.95385 0.98037 0.95079 1.21441 0.99793 0.94578 0.95678 1.21486 0.96972 1.00301 0.95181 1.21333 0.93825 0.94350 1.00616 1.20532 0.98336 1.02095 0.97604 1.20919 0.81672 0.77837 0.94052 1.92991 1.58249 1.93827 1.74789 1.92985 1.96481 1.34993 1.95015 1.20885 0.95762 0.99280 0.94975 0.93076 0.89900 0.92861 0.90711 0.89025 0.78999 0.93998 0.90489 0.91733 0.87072 0.86090 0.84566 0.82302 0.81553 0.81806 0.87023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 9.06 71.98 0.65 -3.41 16 2 C 0.14 3.91 3.50 45.38 0.16 4.07 16 3 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 4 C -0.13 -3.69 6.14 31.82 0.20 -3.50 16 5 C 0.17 5.90 3.70 46.38 0.17 6.07 16 6 H 0.06 2.26 8.11 -2.39 -0.02 2.24 16 7 N -0.72 -33.08 5.26 -316.37 -1.66 -34.75 16 8 C -0.24 -12.41 9.97 84.03 0.84 -11.57 16 9 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16 10 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 11 N -0.97 -56.19 13.06 21.65 0.28 -55.91 16 12 Si 0.97 43.91 29.55 68.60 2.03 45.94 16 13 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 14 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 15 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 16 C 0.09 2.66 6.39 86.85 0.55 3.21 16 17 N -0.61 -17.91 3.08 -787.84 -2.43 -20.33 16 18 C 0.53 15.70 7.62 87.66 0.67 16.37 16 19 O -0.57 -20.30 14.93 -3.03 -0.05 -20.35 16 20 C -0.10 -2.29 4.84 29.10 0.14 -2.15 16 21 C -0.08 -1.85 4.37 -19.86 -0.09 -1.93 16 22 C -0.10 -1.91 9.70 22.27 0.22 -1.69 16 23 C -0.12 -1.84 10.05 22.27 0.22 -1.62 16 24 C -0.08 -1.19 9.67 22.27 0.22 -0.97 16 25 C -0.18 -3.61 5.37 -19.86 -0.11 -3.71 16 26 C 0.31 5.18 5.45 71.24 0.39 5.57 16 27 F -0.22 -4.96 17.26 44.97 0.78 -4.19 16 28 F -0.21 -4.46 17.26 44.97 0.78 -3.68 16 29 C -0.09 -2.20 9.25 22.27 0.21 -2.00 16 30 H 0.05 1.54 6.74 -2.39 -0.02 1.52 16 31 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 32 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.07 2.25 8.00 -2.39 -0.02 2.23 16 34 H 0.09 2.50 7.83 -2.39 -0.02 2.49 16 35 H 0.38 18.67 7.73 -92.71 -0.72 17.96 16 36 H 0.25 14.29 8.31 -92.70 -0.77 13.52 16 37 H 0.08 2.28 7.48 -2.38 -0.02 2.26 16 38 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.11 2.41 7.79 -2.39 -0.02 2.39 16 40 H 0.12 2.39 8.08 -2.39 -0.02 2.37 16 41 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 42 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 43 H 0.17 0.98 7.95 -2.91 -0.02 0.96 16 44 H 0.17 1.14 7.88 -2.38 -0.02 1.12 16 45 H 0.11 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -68.19 382.76 4.92 -63.27 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: 0.29 Total: 30.51 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: 4.90 Total: -0.51 kcal Atomic # 7 Polarization: -107.18 SS G_CDS: -3.81 Total: -110.99 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.05 Total: -20.35 kcal Atomic # 9 Polarization: -9.42 SS G_CDS: 1.55 Total: -7.87 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -68.19 4.92 -63.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989169306.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.708 kcal (2) G-P(sol) polarization free energy of solvation -68.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds