Wall clock time and date at job start Tue Mar 31 2020 21:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.87432 * 2 1 4 4 C 1.54323 * 109.88456 * 121.16878 * 2 1 3 5 5 C 1.55153 * 102.94566 * 141.60954 * 4 2 1 6 6 H 1.09000 * 111.00571 * 206.42339 * 5 4 2 7 7 N 1.46500 * 111.00123 * 82.61293 * 5 4 2 8 8 C 1.36946 * 119.99784 * 155.00147 * 7 5 4 9 9 H 1.07999 * 120.00025 * 359.97438 * 8 7 5 10 10 C 1.38813 * 119.99763 * 179.97438 * 8 7 5 11 11 N 1.31616 * 119.99931 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99593 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47089 * 60.00524 * 12 10 8 14 14 H 1.48505 * 109.46775 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47144 * 299.99956 * 12 10 8 16 16 C 1.55126 * 101.48646 * 324.33436 * 5 4 2 17 17 N 1.47016 * 109.88572 * 238.98016 * 2 1 3 18 18 C 1.34772 * 125.65070 * 61.60429 * 17 2 1 19 19 O 1.21281 * 119.99940 * 0.02562 * 18 17 2 20 20 C 1.50703 * 120.00069 * 180.02562 * 18 17 2 21 21 C 1.50706 * 109.47001 * 179.97438 * 20 18 17 22 22 C 1.38256 * 119.99730 * 89.99820 * 21 20 18 23 23 C 1.38214 * 120.00164 * 179.97438 * 22 21 20 24 24 C 1.38261 * 119.99661 * 0.02562 * 23 22 21 25 25 C 1.38211 * 120.00022 * 359.96199 * 24 23 22 26 26 C 1.50698 * 119.99652 * 180.02562 * 25 24 23 27 27 F 1.39901 * 109.46691 * 120.00203 * 26 25 24 28 28 F 1.39901 * 109.47384 * 239.99712 * 26 25 24 29 29 C 1.38211 * 120.00152 * 269.72492 * 21 20 18 30 30 H 1.09001 * 109.47400 * 179.57013 * 1 2 3 31 31 H 1.09005 * 109.47351 * 299.57074 * 1 2 3 32 32 H 1.09005 * 109.47115 * 59.56678 * 1 2 3 33 33 H 1.09004 * 110.72095 * 259.97773 * 4 2 1 34 34 H 1.09003 * 110.71591 * 23.06554 * 4 2 1 35 35 H 0.96992 * 120.00482 * 335.00109 * 7 5 4 36 36 H 0.97002 * 119.99748 * 179.97438 * 11 10 8 37 37 H 1.08995 * 110.49787 * 278.45116 * 16 5 4 38 38 H 1.09001 * 110.34352 * 156.05381 * 16 5 4 39 39 H 1.09000 * 109.46978 * 60.00374 * 20 18 17 40 40 H 1.09000 * 109.46976 * 299.99619 * 20 18 17 41 41 H 1.07999 * 120.00073 * 0.02562 * 22 21 20 42 42 H 1.07991 * 120.00008 * 180.02562 * 23 22 21 43 43 H 1.08001 * 119.99615 * 179.97438 * 24 23 22 44 44 H 1.08995 * 109.47392 * 0.02562 * 26 25 24 45 45 H 1.08004 * 119.99891 * 0.02562 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7511 1.2417 5 6 3.2876 -1.5151 0.6905 6 1 3.4851 -2.4126 1.2766 7 7 4.4675 -0.6478 0.6495 8 6 5.7218 -1.1955 0.6982 9 1 5.8410 -2.2666 0.7673 10 6 6.8399 -0.3737 0.6588 11 7 6.6945 0.9317 0.5751 12 14 8.5507 -1.1207 0.7261 13 1 8.7371 -2.0356 -0.4286 14 1 9.5659 -0.0384 0.6695 15 1 8.7092 -1.8818 1.9913 16 6 2.8099 -1.8816 -0.7392 17 7 2.0300 -0.7125 -1.1848 18 6 1.8074 -0.3588 -2.4661 19 8 1.1436 0.6247 -2.7172 20 6 2.3834 -1.1854 -3.5869 21 6 1.9904 -0.5808 -4.9102 22 6 2.8007 0.3691 -5.5041 23 6 2.4406 0.9233 -6.7180 24 6 1.2697 0.5281 -7.3381 25 6 0.4599 -0.4217 -6.7445 26 6 -0.8160 -0.8528 -7.4208 27 9 -0.7658 -2.2270 -7.6783 28 9 -1.9035 -0.5743 -6.5860 29 6 0.8228 -0.9799 -5.5329 30 1 -0.3634 -1.0276 -0.0077 31 1 -0.3634 0.5072 0.8938 32 1 -0.3633 0.5206 -0.8861 33 1 2.3528 -0.0485 2.0200 34 1 1.3038 -1.4457 1.6182 35 1 4.3605 0.3142 0.5878 36 1 7.4758 1.5059 0.5480 37 1 2.1802 -2.7709 -0.7150 38 1 3.6656 -2.0394 -1.3958 39 1 1.9972 -2.2027 -3.5236 40 1 3.4701 -1.2034 -3.5037 41 1 3.7155 0.6775 -5.0198 42 1 3.0737 1.6649 -7.1820 43 1 0.9882 0.9614 -8.2864 44 1 -0.9303 -0.3114 -8.3599 45 1 0.1919 -1.7249 -5.0708 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989169309.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:49 Heat of formation + Delta-G solvation = -102.226179 kcal Electronic energy + Delta-G solvation = -29298.706171 eV Core-core repulsion = 24951.701921 eV Total energy + Delta-G solvation = -4347.004250 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.14900 -47.13625 -40.15575 -39.19844 -37.27027 -34.01682 -33.34790 -31.87670 -31.45697 -31.27262 -28.50274 -27.74521 -26.23026 -25.46115 -23.80013 -22.76399 -22.04978 -21.11303 -19.96862 -18.58383 -17.53131 -17.37272 -17.35853 -17.27307 -16.76118 -16.22799 -15.92828 -15.40217 -14.73776 -14.57653 -14.27520 -14.07803 -13.95803 -13.67383 -13.51373 -13.48413 -13.13901 -13.07719 -13.01129 -12.81623 -12.49163 -12.21363 -12.10360 -12.03137 -11.70955 -11.64976 -11.28055 -11.14823 -10.99577 -10.94477 -10.77619 -10.67447 -10.35310 -10.06267 -9.76597 -9.56459 -9.13072 -9.08384 -8.84319 -8.22717 -7.09234 -5.87236 -3.18117 1.01589 1.21260 2.98081 3.25797 3.36568 3.41584 3.42937 3.52658 3.64115 3.95233 4.29545 4.48730 4.65290 4.79230 4.82245 4.87042 4.90859 5.11219 5.18273 5.23440 5.26927 5.33770 5.41525 5.50131 5.54586 5.57383 5.67519 5.74633 5.79084 5.86868 5.87745 5.99974 6.15543 6.18010 6.20890 6.25073 6.40825 6.42019 6.45793 6.57571 6.68027 6.75416 6.82086 7.58818 7.95118 8.29955 8.53355 9.41692 9.97099 10.31701 11.34449 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013382 B = 0.002917 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.892407 B = 9597.095917 C =10825.780768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.139 3.861 3 H 0.073 0.927 4 C -0.139 4.139 5 C 0.169 3.831 6 H 0.074 0.926 7 N -0.711 5.711 8 C -0.250 4.250 9 H 0.072 0.928 10 C -0.008 4.008 11 N -0.928 5.928 12 Si 0.908 3.092 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.285 1.285 16 C 0.067 3.933 17 N -0.599 5.599 18 C 0.532 3.468 19 O -0.545 6.545 20 C -0.102 4.102 21 C -0.057 4.057 22 C -0.080 4.080 23 C -0.120 4.120 24 C -0.091 4.091 25 C -0.174 4.174 26 C 0.314 3.686 27 F -0.202 7.202 28 F -0.200 7.200 29 C -0.066 4.066 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.386 0.614 36 H 0.257 0.743 37 H 0.056 0.944 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.127 0.873 44 H 0.116 0.884 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.163 -4.306 -13.106 19.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.036 3.964 3 H 0.091 0.909 4 C -0.178 4.178 5 C 0.057 3.943 6 H 0.092 0.908 7 N -0.351 5.351 8 C -0.381 4.381 9 H 0.090 0.910 10 C -0.205 4.205 11 N -0.575 5.575 12 Si 0.738 3.262 13 H -0.212 1.212 14 H -0.217 1.217 15 H -0.212 1.212 16 C -0.060 4.060 17 N -0.332 5.332 18 C 0.320 3.680 19 O -0.423 6.423 20 C -0.141 4.141 21 C -0.058 4.058 22 C -0.098 4.098 23 C -0.138 4.138 24 C -0.109 4.109 25 C -0.175 4.175 26 C 0.261 3.739 27 F -0.183 7.183 28 F -0.181 7.181 29 C -0.084 4.084 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.220 0.780 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.118 0.882 40 H 0.127 0.873 41 H 0.147 0.853 42 H 0.148 0.852 43 H 0.145 0.855 44 H 0.134 0.866 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.369 -3.867 -13.269 19.229 hybrid contribution 0.957 -0.146 0.073 0.971 sum -12.412 -4.013 -13.196 18.555 Atomic orbital electron populations 1.22132 0.95520 1.01661 1.02425 1.21460 0.93489 0.96711 0.84772 0.90925 1.23084 0.98281 1.00047 0.96432 1.21347 0.86997 0.94405 0.91584 0.90822 1.42329 1.00058 1.05495 1.87187 1.19197 0.83183 0.91990 1.43693 0.90982 1.24772 0.97963 0.95342 1.02397 1.69659 1.29227 1.02151 1.56472 0.86276 0.84207 0.77793 0.77909 1.21182 1.21689 1.21155 1.23470 0.94434 0.86869 1.01194 1.48418 1.51842 1.28499 1.04447 1.19936 0.80477 0.85253 0.82320 1.90678 1.40534 1.27676 1.83414 1.20682 1.03567 0.99747 0.90142 1.19337 0.94629 0.96928 0.94886 1.21253 0.99477 0.94354 0.94727 1.21083 0.96795 1.00258 0.95691 1.20857 0.94409 0.96015 0.99599 1.20212 0.97303 1.01933 0.98044 1.20383 0.82605 0.78157 0.92767 1.93007 1.96673 1.33938 1.94706 1.93026 1.56904 1.93356 1.74792 1.20750 0.95523 0.98564 0.93568 0.92948 0.92098 0.91621 0.89858 0.90813 0.77994 0.93295 0.92601 0.90261 0.88183 0.87314 0.85256 0.85250 0.85522 0.86648 0.85826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.10 37.15 0.34 -1.92 16 2 C 0.14 2.25 3.45 -66.96 -0.23 2.01 16 3 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 4 C -0.14 -2.10 6.07 -24.90 -0.15 -2.26 16 5 C 0.17 2.98 3.72 -65.67 -0.24 2.74 16 6 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 7 N -0.71 -16.44 5.25 -51.24 -0.27 -16.70 16 8 C -0.25 -6.43 9.96 -15.05 -0.15 -6.58 16 9 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 10 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 11 N -0.93 -27.00 13.06 55.49 0.72 -26.28 16 12 Si 0.91 21.35 29.55 -169.99 -5.02 16.32 16 13 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 16 C 0.07 1.04 6.41 -2.41 -0.02 1.03 16 17 N -0.60 -9.91 3.06 -162.88 -0.50 -10.41 16 18 C 0.53 9.09 7.64 -10.99 -0.08 9.01 16 19 O -0.54 -10.93 15.07 5.56 0.08 -10.84 16 20 C -0.10 -1.39 4.83 -29.03 -0.14 -1.53 16 21 C -0.06 -0.78 4.37 -104.62 -0.46 -1.24 16 22 C -0.08 -1.04 9.70 -39.58 -0.38 -1.42 16 23 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 24 C -0.09 -0.91 9.67 -39.58 -0.38 -1.29 16 25 C -0.17 -2.00 5.37 -104.62 -0.56 -2.56 16 26 C 0.31 3.09 5.45 36.00 0.20 3.29 16 27 F -0.20 -2.25 17.25 2.25 0.04 -2.21 16 28 F -0.20 -2.43 17.26 2.25 0.04 -2.40 16 29 C -0.07 -0.86 9.25 -39.58 -0.37 -1.23 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 1.06 6.88 -51.93 -0.36 0.71 16 33 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.07 0.93 7.85 -51.93 -0.41 0.52 16 35 H 0.39 9.84 7.86 -40.82 -0.32 9.52 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 1.32 7.48 -51.93 -0.39 0.93 16 39 H 0.10 1.14 8.08 -51.93 -0.42 0.72 16 40 H 0.11 1.46 7.80 -51.93 -0.40 1.05 16 41 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.13 0.84 7.95 -52.49 -0.42 0.42 16 44 H 0.12 0.69 7.88 -51.93 -0.41 0.28 16 45 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 LS Contribution 383.26 15.07 5.78 5.78 Total: -1.00 -31.92 383.26 -8.73 -40.65 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -6.47 Total: 10.08 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -3.13 Total: -3.98 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -0.04 Total: -53.40 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.08 Total: -10.84 kcal Atomic # 9 Polarization: -4.69 SS G_CDS: 0.08 Total: -4.61 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.92 -8.73 -40.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989169309.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.578 kcal (2) G-P(sol) polarization free energy of solvation -31.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds