Wall clock time and date at job start Tue Mar 31 2020 21:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.87432 * 2 1 4 4 C 1.54323 * 109.88456 * 121.16878 * 2 1 3 5 5 C 1.55153 * 102.94566 * 141.60954 * 4 2 1 6 6 H 1.09000 * 111.00571 * 206.42339 * 5 4 2 7 7 N 1.46500 * 111.00123 * 82.61293 * 5 4 2 8 8 C 1.36946 * 119.99784 * 155.00147 * 7 5 4 9 9 H 1.07999 * 120.00025 * 359.97438 * 8 7 5 10 10 C 1.38813 * 119.99763 * 179.97438 * 8 7 5 11 11 N 1.31616 * 119.99931 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99593 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47089 * 60.00524 * 12 10 8 14 14 H 1.48505 * 109.46775 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47144 * 299.99956 * 12 10 8 16 16 C 1.55126 * 101.48646 * 324.33436 * 5 4 2 17 17 N 1.47016 * 109.88572 * 238.98016 * 2 1 3 18 18 C 1.34772 * 125.65070 * 61.60429 * 17 2 1 19 19 O 1.21281 * 119.99940 * 0.02562 * 18 17 2 20 20 C 1.50703 * 120.00069 * 180.02562 * 18 17 2 21 21 C 1.50706 * 109.47001 * 179.97438 * 20 18 17 22 22 C 1.38256 * 119.99730 * 89.99820 * 21 20 18 23 23 C 1.38214 * 120.00164 * 179.97438 * 22 21 20 24 24 C 1.38261 * 119.99661 * 0.02562 * 23 22 21 25 25 C 1.38211 * 120.00022 * 359.96199 * 24 23 22 26 26 C 1.50698 * 119.99652 * 180.02562 * 25 24 23 27 27 F 1.39901 * 109.46691 * 120.00203 * 26 25 24 28 28 F 1.39901 * 109.47384 * 239.99712 * 26 25 24 29 29 C 1.38211 * 120.00152 * 269.72492 * 21 20 18 30 30 H 1.09001 * 109.47400 * 179.57013 * 1 2 3 31 31 H 1.09005 * 109.47351 * 299.57074 * 1 2 3 32 32 H 1.09005 * 109.47115 * 59.56678 * 1 2 3 33 33 H 1.09004 * 110.72095 * 259.97773 * 4 2 1 34 34 H 1.09003 * 110.71591 * 23.06554 * 4 2 1 35 35 H 0.96992 * 120.00482 * 335.00109 * 7 5 4 36 36 H 0.97002 * 119.99748 * 179.97438 * 11 10 8 37 37 H 1.08995 * 110.49787 * 278.45116 * 16 5 4 38 38 H 1.09001 * 110.34352 * 156.05381 * 16 5 4 39 39 H 1.09000 * 109.46978 * 60.00374 * 20 18 17 40 40 H 1.09000 * 109.46976 * 299.99619 * 20 18 17 41 41 H 1.07999 * 120.00073 * 0.02562 * 22 21 20 42 42 H 1.07991 * 120.00008 * 180.02562 * 23 22 21 43 43 H 1.08001 * 119.99615 * 179.97438 * 24 23 22 44 44 H 1.08995 * 109.47392 * 0.02562 * 26 25 24 45 45 H 1.08004 * 119.99891 * 0.02562 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7511 1.2417 5 6 3.2876 -1.5151 0.6905 6 1 3.4851 -2.4126 1.2766 7 7 4.4675 -0.6478 0.6495 8 6 5.7218 -1.1955 0.6982 9 1 5.8410 -2.2666 0.7673 10 6 6.8399 -0.3737 0.6588 11 7 6.6945 0.9317 0.5751 12 14 8.5507 -1.1207 0.7261 13 1 8.7371 -2.0356 -0.4286 14 1 9.5659 -0.0384 0.6695 15 1 8.7092 -1.8818 1.9913 16 6 2.8099 -1.8816 -0.7392 17 7 2.0300 -0.7125 -1.1848 18 6 1.8074 -0.3588 -2.4661 19 8 1.1436 0.6247 -2.7172 20 6 2.3834 -1.1854 -3.5869 21 6 1.9904 -0.5808 -4.9102 22 6 2.8007 0.3691 -5.5041 23 6 2.4406 0.9233 -6.7180 24 6 1.2697 0.5281 -7.3381 25 6 0.4599 -0.4217 -6.7445 26 6 -0.8160 -0.8528 -7.4208 27 9 -0.7658 -2.2270 -7.6783 28 9 -1.9035 -0.5743 -6.5860 29 6 0.8228 -0.9799 -5.5329 30 1 -0.3634 -1.0276 -0.0077 31 1 -0.3634 0.5072 0.8938 32 1 -0.3633 0.5206 -0.8861 33 1 2.3528 -0.0485 2.0200 34 1 1.3038 -1.4457 1.6182 35 1 4.3605 0.3142 0.5878 36 1 7.4758 1.5059 0.5480 37 1 2.1802 -2.7709 -0.7150 38 1 3.6656 -2.0394 -1.3958 39 1 1.9972 -2.2027 -3.5236 40 1 3.4701 -1.2034 -3.5037 41 1 3.7155 0.6775 -5.0198 42 1 3.0737 1.6649 -7.1820 43 1 0.9882 0.9614 -8.2864 44 1 -0.9303 -0.3114 -8.3599 45 1 0.1919 -1.7249 -5.0708 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989169309.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:48 Heat of formation + Delta-G solvation = -120.179135 kcal Electronic energy + Delta-G solvation = -29299.484669 eV Core-core repulsion = 24951.701921 eV Total energy + Delta-G solvation = -4347.782749 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.96278 -47.96740 -41.38472 -40.22907 -38.64633 -35.78597 -34.39059 -33.17959 -32.84132 -32.43863 -30.12873 -28.80470 -27.04955 -26.71390 -25.70206 -23.89940 -23.02048 -22.18226 -21.32805 -19.87147 -19.25404 -18.32400 -18.23011 -18.17752 -18.03422 -17.32048 -17.11274 -16.62248 -16.22687 -15.90490 -15.42607 -15.27481 -15.22484 -14.92563 -14.86798 -14.46728 -14.35643 -14.18635 -14.09536 -13.89943 -13.52181 -13.44135 -13.28771 -13.20153 -12.91941 -12.85800 -12.82122 -12.68687 -12.28702 -12.25314 -12.12458 -12.05552 -11.77911 -11.63106 -11.48283 -11.03490 -10.84471 -10.03973 -9.79037 -9.63241 -8.97173 -7.92456 -5.21726 0.11204 0.30578 1.50007 1.51775 1.57715 1.64849 2.07260 2.57508 2.65172 2.77644 3.25912 3.38666 3.47313 3.55988 3.75828 3.86203 3.93439 3.95626 4.02785 4.09014 4.11967 4.13795 4.23093 4.34803 4.37682 4.47196 4.50187 4.59170 4.69327 4.76589 4.79115 4.85231 4.94024 4.98558 5.10818 5.17975 5.23000 5.29337 5.35087 5.36359 5.50307 5.53789 5.56549 5.88598 6.28120 6.63017 7.19974 7.34779 8.09728 8.31999 9.30641 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013382 B = 0.002917 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.892407 B = 9597.095917 C =10825.780768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.134 3.866 3 H 0.037 0.963 4 C -0.124 4.124 5 C 0.157 3.843 6 H 0.089 0.911 7 N -0.726 5.726 8 C -0.237 4.237 9 H 0.086 0.914 10 C -0.075 4.075 11 N -0.971 5.971 12 Si 0.970 3.030 13 H -0.276 1.276 14 H -0.304 1.304 15 H -0.277 1.277 16 C 0.076 3.924 17 N -0.602 5.602 18 C 0.524 3.476 19 O -0.581 6.581 20 C -0.094 4.094 21 C -0.077 4.077 22 C -0.104 4.104 23 C -0.123 4.123 24 C -0.082 4.082 25 C -0.184 4.184 26 C 0.312 3.688 27 F -0.211 7.211 28 F -0.216 7.216 29 C -0.085 4.085 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.040 0.960 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.369 0.631 36 H 0.248 0.752 37 H 0.096 0.904 38 H 0.067 0.933 39 H 0.123 0.877 40 H 0.106 0.894 41 H 0.121 0.879 42 H 0.154 0.846 43 H 0.170 0.830 44 H 0.165 0.835 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.279 -6.076 -14.237 21.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.030 3.970 3 H 0.055 0.945 4 C -0.162 4.162 5 C 0.047 3.953 6 H 0.107 0.893 7 N -0.364 5.364 8 C -0.368 4.368 9 H 0.104 0.896 10 C -0.268 4.268 11 N -0.622 5.622 12 Si 0.799 3.201 13 H -0.202 1.202 14 H -0.231 1.231 15 H -0.203 1.203 16 C -0.049 4.049 17 N -0.335 5.335 18 C 0.314 3.686 19 O -0.462 6.462 20 C -0.133 4.133 21 C -0.078 4.078 22 C -0.122 4.122 23 C -0.141 4.141 24 C -0.100 4.100 25 C -0.184 4.184 26 C 0.259 3.741 27 F -0.193 7.193 28 F -0.197 7.197 29 C -0.103 4.103 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.130 0.870 35 H 0.201 0.799 36 H 0.057 0.943 37 H 0.114 0.886 38 H 0.086 0.914 39 H 0.141 0.859 40 H 0.124 0.876 41 H 0.139 0.861 42 H 0.172 0.828 43 H 0.187 0.813 44 H 0.182 0.818 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.516 -5.715 -14.388 21.222 hybrid contribution 1.218 0.391 0.421 1.347 sum -13.298 -5.324 -13.966 20.006 Atomic orbital electron populations 1.22014 0.93643 1.02644 1.02166 1.21502 0.94928 0.95179 0.85354 0.94471 1.23002 0.97805 1.00029 0.95408 1.21673 0.86101 0.94392 0.93157 0.89282 1.42530 1.01125 1.05311 1.87433 1.19659 0.84195 0.92539 1.40447 0.89594 1.25541 1.01594 0.95702 1.03922 1.69834 1.29386 1.03542 1.59441 0.85266 0.79858 0.76661 0.78289 1.20230 1.23055 1.20288 1.23381 0.94723 0.87738 0.99086 1.48554 1.51646 1.28745 1.04534 1.20555 0.79964 0.85084 0.83046 1.90648 1.42258 1.29302 1.83979 1.20657 1.03123 1.00312 0.89208 1.19397 0.95457 0.97887 0.95038 1.21401 0.99584 0.95111 0.96106 1.21441 0.97538 1.00243 0.94865 1.21319 0.93219 0.94726 1.00711 1.20557 0.98272 1.01994 0.97614 1.20851 0.81176 0.78023 0.94070 1.92986 1.96628 1.34931 1.94714 1.92993 1.57653 1.93434 1.75661 1.20874 0.95482 0.99249 0.94725 0.91164 0.90177 0.94098 0.90862 0.87033 0.79950 0.94316 0.88636 0.91449 0.85913 0.87557 0.86132 0.82793 0.81305 0.81791 0.86163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.00 9.10 71.98 0.66 -3.35 16 2 C 0.13 4.30 3.45 45.34 0.16 4.46 16 3 H 0.04 1.44 8.14 -2.39 -0.02 1.43 16 4 C -0.12 -3.53 6.07 31.78 0.19 -3.33 16 5 C 0.16 5.28 3.72 46.46 0.17 5.45 16 6 H 0.09 2.76 8.09 -2.39 -0.02 2.75 16 7 N -0.73 -33.69 5.25 -316.02 -1.66 -35.35 16 8 C -0.24 -12.12 9.96 84.03 0.84 -11.28 16 9 H 0.09 4.08 7.83 -2.91 -0.02 4.06 16 10 C -0.08 -4.15 5.50 84.86 0.47 -3.68 16 11 N -0.97 -58.41 13.06 21.65 0.28 -58.13 16 12 Si 0.97 44.32 29.55 68.60 2.03 46.35 16 13 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 14 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 15 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 16 C 0.08 2.24 6.41 86.93 0.56 2.80 16 17 N -0.60 -19.78 3.06 -787.63 -2.41 -22.19 16 18 C 0.52 18.26 7.64 87.66 0.67 18.93 16 19 O -0.58 -24.20 15.07 -3.03 -0.05 -24.25 16 20 C -0.09 -2.60 4.83 29.10 0.14 -2.46 16 21 C -0.08 -2.15 4.37 -19.86 -0.09 -2.24 16 22 C -0.10 -2.74 9.70 22.27 0.22 -2.53 16 23 C -0.12 -2.51 10.05 22.27 0.22 -2.29 16 24 C -0.08 -1.43 9.67 22.27 0.22 -1.21 16 25 C -0.18 -3.92 5.37 -19.87 -0.11 -4.02 16 26 C 0.31 5.42 5.45 71.24 0.39 5.80 16 27 F -0.21 -4.36 17.25 44.97 0.78 -3.58 16 28 F -0.22 -4.99 17.26 44.97 0.78 -4.22 16 29 C -0.09 -2.22 9.25 22.27 0.21 -2.01 16 30 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.04 1.32 6.88 -2.38 -0.02 1.31 16 33 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.11 2.38 7.85 -2.39 -0.02 2.36 16 35 H 0.37 19.45 7.86 -92.71 -0.73 18.72 16 36 H 0.25 14.69 8.31 -92.71 -0.77 13.91 16 37 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.07 2.18 7.48 -2.39 -0.02 2.16 16 39 H 0.12 2.72 8.08 -2.39 -0.02 2.70 16 40 H 0.11 2.95 7.80 -2.39 -0.02 2.93 16 41 H 0.12 3.24 8.06 -2.91 -0.02 3.22 16 42 H 0.15 2.27 8.06 -2.92 -0.02 2.25 16 43 H 0.17 1.44 7.95 -2.91 -0.02 1.41 16 44 H 0.17 1.26 7.88 -2.39 -0.02 1.24 16 45 H 0.12 3.06 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -72.37 383.26 4.93 -67.44 By element: Atomic # 1 Polarization: 34.60 SS G_CDS: 0.28 Total: 34.87 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 4.90 Total: -0.94 kcal Atomic # 7 Polarization: -111.88 SS G_CDS: -3.79 Total: -115.67 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.05 Total: -24.25 kcal Atomic # 9 Polarization: -9.35 SS G_CDS: 1.55 Total: -7.80 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -72.37 4.93 -67.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989169309.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.736 kcal (2) G-P(sol) polarization free energy of solvation -72.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds