Wall clock time and date at job start Tue Mar 31 2020 21:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.41304 * 2 1 4 4 C 1.54909 * 110.36788 * 237.70367 * 2 1 3 5 5 C 1.55160 * 101.57919 * 204.14986 * 4 2 1 6 6 H 1.08998 * 110.72212 * 276.96227 * 5 4 2 7 7 N 1.46494 * 110.71850 * 153.86334 * 5 4 2 8 8 C 1.36936 * 119.99935 * 155.00017 * 7 5 4 9 9 H 1.08001 * 120.00128 * 0.02562 * 8 7 5 10 10 C 1.38819 * 120.00114 * 179.97438 * 8 7 5 11 11 N 1.31618 * 119.99957 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 119.99908 * 0.02562 * 10 8 7 13 13 H 1.48504 * 109.47363 * 89.99641 * 12 10 8 14 14 H 1.48499 * 109.47049 * 209.99698 * 12 10 8 15 15 H 1.48500 * 109.47219 * 329.99802 * 12 10 8 16 16 C 1.54338 * 103.01873 * 35.30715 * 5 4 2 17 17 N 1.47013 * 107.26881 * 338.13791 * 16 5 4 18 18 C 1.34773 * 125.65133 * 178.84622 * 17 16 5 19 19 O 1.21281 * 120.00635 * 179.69044 * 18 17 16 20 20 C 1.50698 * 119.99783 * 359.69845 * 18 17 16 21 21 C 1.50707 * 109.47247 * 179.97438 * 20 18 17 22 22 C 1.38256 * 120.00111 * 269.97936 * 21 20 18 23 23 C 1.38208 * 119.99998 * 179.82904 * 22 21 20 24 24 C 1.38260 * 120.00082 * 0.45007 * 23 22 21 25 25 C 1.38212 * 119.99650 * 359.50197 * 24 23 22 26 26 C 1.50707 * 119.99857 * 180.25737 * 25 24 23 27 27 F 1.39901 * 109.46852 * 30.00631 * 26 25 24 28 28 F 1.39903 * 109.46640 * 150.00469 * 26 25 24 29 29 C 1.38216 * 119.99835 * 89.99982 * 21 20 18 30 30 H 1.09003 * 109.47227 * 299.15917 * 1 2 3 31 31 H 1.08999 * 109.47073 * 59.16258 * 1 2 3 32 32 H 1.09000 * 109.46680 * 179.16347 * 1 2 3 33 33 H 1.08993 * 111.00091 * 322.21957 * 4 2 1 34 34 H 1.08994 * 111.00264 * 86.07708 * 4 2 1 35 35 H 0.97000 * 120.00567 * 335.00421 * 7 5 4 36 36 H 0.97004 * 120.00064 * 180.02562 * 11 10 8 37 37 H 1.09009 * 109.98887 * 218.66073 * 16 5 4 38 38 H 1.09003 * 109.77749 * 97.49997 * 16 5 4 39 39 H 1.09005 * 109.47656 * 59.99829 * 20 18 17 40 40 H 1.08992 * 109.47409 * 299.99420 * 20 18 17 41 41 H 1.07999 * 120.00037 * 359.97438 * 22 21 20 42 42 H 1.08004 * 120.00265 * 180.23005 * 23 22 21 43 43 H 1.08002 * 120.00476 * 179.78830 * 24 23 22 44 44 H 1.08996 * 109.47180 * 270.00044 * 26 25 24 45 45 H 1.08005 * 120.00025 * 359.97438 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0692 -0.7759 -1.2276 5 6 3.4778 -1.1997 -0.7340 6 1 4.1952 -0.3912 -0.8749 7 7 3.9251 -2.4128 -1.4228 8 6 5.2632 -2.6762 -1.5462 9 1 5.9888 -1.9898 -1.1355 10 6 5.6870 -3.8261 -2.1984 11 7 6.9731 -4.0789 -2.3175 12 14 4.4319 -5.0136 -2.9082 13 1 4.1252 -4.6305 -4.3098 14 1 4.9842 -6.3918 -2.8814 15 1 3.1886 -4.9627 -2.0978 16 6 3.2525 -1.4723 0.7682 17 7 2.0431 -0.7383 1.1684 18 6 1.4972 -0.7362 2.4006 19 8 0.4966 -0.0867 2.6195 20 6 2.1301 -1.5409 3.5065 21 6 1.3323 -1.3680 4.7733 22 6 1.6435 -0.3474 5.6525 23 6 0.9097 -0.1867 6.8125 24 6 -0.1298 -1.0524 7.0985 25 6 -0.4415 -2.0722 6.2192 26 6 -1.5782 -3.0123 6.5280 27 9 -2.5472 -2.3407 7.2811 28 9 -2.1472 -3.4644 5.3325 29 6 0.2898 -2.2302 5.0565 30 1 -0.3634 0.5007 0.8974 31 1 -0.3633 0.5268 -0.8824 32 1 -0.3633 -1.0276 -0.0150 33 1 1.4512 -1.6481 -1.4406 34 1 2.1399 -0.1264 -2.1000 35 1 3.2734 -3.0295 -1.7915 36 1 7.2693 -4.8822 -2.7735 37 1 4.1081 -1.1187 1.3436 38 1 3.1090 -2.5404 0.9318 39 1 3.1505 -1.1942 3.6700 40 1 2.1447 -2.5942 3.2268 41 1 2.4586 0.3259 5.4315 42 1 1.1504 0.6129 7.4975 43 1 -0.7011 -0.9291 8.0067 44 1 -1.2019 -3.8632 7.0958 45 1 0.0466 -3.0275 4.3697 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989169310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:52 Heat of formation + Delta-G solvation = -95.351309 kcal Electronic energy + Delta-G solvation = -28995.903125 eV Core-core repulsion = 24649.196992 eV Total energy + Delta-G solvation = -4346.706133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.25030 -47.26900 -40.36379 -39.33913 -37.42560 -34.37798 -33.48023 -32.05600 -31.67829 -31.47186 -29.00463 -27.78163 -26.42068 -25.47195 -23.77975 -22.67041 -22.06351 -20.97246 -20.48132 -18.79001 -17.79748 -17.74334 -17.58906 -17.38543 -16.79832 -16.25914 -16.14856 -15.57883 -15.07321 -14.68602 -14.44074 -14.19508 -14.04146 -13.80100 -13.60436 -13.47572 -13.43032 -13.18739 -13.14242 -12.69066 -12.57335 -12.44810 -12.22123 -12.10684 -12.03172 -11.84834 -11.60067 -11.37390 -11.21659 -11.08700 -10.90881 -10.74760 -10.45378 -10.15904 -9.71755 -9.56809 -9.21088 -9.11015 -8.94162 -8.42844 -7.47307 -5.90753 -3.29127 0.90074 1.08912 2.74099 3.03887 3.28351 3.31571 3.37338 3.40943 3.52215 3.89636 4.23007 4.46729 4.51155 4.58143 4.64155 4.72624 4.83187 4.95984 4.99846 5.06931 5.09390 5.12575 5.32452 5.32731 5.38485 5.46937 5.52735 5.62651 5.69382 5.72863 5.75063 5.87681 5.96141 6.06211 6.08035 6.12829 6.26697 6.30848 6.33084 6.36951 6.57561 6.63572 6.71302 7.70874 7.83515 8.27843 8.30750 9.04219 9.76546 9.94478 11.26768 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014123 B = 0.002578 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.075894 B =10860.433214 C =11251.934616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.137 3.863 3 H 0.074 0.926 4 C -0.141 4.141 5 C 0.178 3.822 6 H 0.077 0.923 7 N -0.737 5.737 8 C -0.255 4.255 9 H 0.093 0.907 10 C 0.010 3.990 11 N -0.928 5.928 12 Si 0.883 3.117 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.277 1.277 16 C 0.072 3.928 17 N -0.611 5.611 18 C 0.530 3.470 19 O -0.540 6.540 20 C -0.102 4.102 21 C -0.058 4.058 22 C -0.086 4.086 23 C -0.120 4.120 24 C -0.091 4.091 25 C -0.171 4.171 26 C 0.314 3.686 27 F -0.201 7.201 28 F -0.198 7.198 29 C -0.072 4.072 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.364 0.636 36 H 0.261 0.739 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.129 0.871 44 H 0.121 0.879 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.668 5.820 17.587 23.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.034 3.966 3 H 0.092 0.908 4 C -0.180 4.180 5 C 0.066 3.934 6 H 0.095 0.905 7 N -0.378 5.378 8 C -0.385 4.385 9 H 0.111 0.889 10 C -0.186 4.186 11 N -0.575 5.575 12 Si 0.713 3.287 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.203 1.203 16 C -0.054 4.054 17 N -0.345 5.345 18 C 0.318 3.682 19 O -0.418 6.418 20 C -0.142 4.142 21 C -0.059 4.059 22 C -0.104 4.104 23 C -0.137 4.137 24 C -0.109 4.109 25 C -0.171 4.171 26 C 0.261 3.739 27 F -0.182 7.182 28 F -0.180 7.180 29 C -0.090 4.090 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.198 0.802 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.147 0.853 44 H 0.138 0.862 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.975 6.143 17.736 23.401 hybrid contribution -0.737 -1.047 -0.634 1.429 sum -14.712 5.096 17.102 23.127 Atomic orbital electron populations 1.22160 0.94275 1.02432 1.03194 1.21845 0.94793 0.95377 0.84564 0.90832 1.23218 0.97716 1.00392 0.96708 1.21130 0.93377 0.90530 0.88356 0.90518 1.42736 1.05128 1.23095 1.66857 1.19077 0.81744 1.05954 1.31685 0.88949 1.24686 0.95591 0.98036 1.00313 1.69696 1.12605 1.27815 1.47374 0.86581 0.81191 0.81408 0.79484 1.20906 1.21600 1.20287 1.23264 0.85371 0.96640 1.00130 1.48642 1.28583 1.48481 1.08834 1.20033 0.84067 0.81946 0.82107 1.90646 1.25345 1.44001 1.81832 1.20693 1.00066 1.02379 0.91069 1.19300 0.96047 0.95544 0.94971 1.21154 0.99267 0.96352 0.93614 1.21076 0.95798 0.99347 0.97528 1.20871 0.97158 0.93795 0.99046 1.20321 0.99070 0.99644 0.98113 1.20302 0.82314 0.92700 0.78596 1.92988 1.66217 1.82702 1.76327 1.93014 1.86527 1.89879 1.48548 1.20751 0.93851 0.99241 0.95153 0.89734 0.92375 0.92921 0.90803 0.89879 0.80228 0.92846 0.91693 0.90959 0.87641 0.87718 0.85594 0.85353 0.85321 0.86173 0.85298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 8.71 37.16 0.32 -1.87 16 2 C 0.14 1.88 3.76 -66.41 -0.25 1.63 16 3 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 4 C -0.14 -2.01 6.13 -24.58 -0.15 -2.16 16 5 C 0.18 3.01 3.61 -66.09 -0.24 2.77 16 6 H 0.08 1.32 8.09 -51.93 -0.42 0.90 16 7 N -0.74 -15.74 4.96 -51.64 -0.26 -16.00 16 8 C -0.26 -6.62 10.44 -15.06 -0.16 -6.78 16 9 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 10 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 11 N -0.93 -27.73 13.97 55.49 0.78 -26.96 16 12 Si 0.88 20.91 27.74 -169.99 -4.71 16.19 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 H -0.28 -6.14 6.52 56.52 0.37 -5.77 16 16 C 0.07 1.08 6.25 -3.06 -0.02 1.07 16 17 N -0.61 -8.72 3.24 -163.04 -0.53 -9.25 16 18 C 0.53 7.62 7.62 -10.99 -0.08 7.53 16 19 O -0.54 -9.17 13.69 5.56 0.08 -9.10 16 20 C -0.10 -1.16 5.02 -29.03 -0.15 -1.30 16 21 C -0.06 -0.67 4.37 -104.62 -0.46 -1.12 16 22 C -0.09 -0.89 9.70 -39.59 -0.38 -1.27 16 23 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 24 C -0.09 -0.85 9.40 -39.58 -0.37 -1.23 16 25 C -0.17 -1.77 5.73 -104.62 -0.60 -2.37 16 26 C 0.31 2.85 5.65 36.01 0.20 3.05 16 27 F -0.20 -2.06 16.48 2.25 0.04 -2.03 16 28 F -0.20 -2.27 16.48 2.25 0.04 -2.23 16 29 C -0.07 -0.82 9.05 -39.58 -0.36 -1.18 16 30 H 0.08 1.29 5.89 -51.93 -0.31 0.98 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 1.08 7.92 -51.93 -0.41 0.67 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.36 7.76 5.62 -40.82 -0.23 7.53 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 38 H 0.07 1.16 8.03 -51.93 -0.42 0.74 16 39 H 0.11 1.02 8.09 -51.93 -0.42 0.60 16 40 H 0.10 1.09 8.09 -51.93 -0.42 0.67 16 41 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 42 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 43 H 0.13 0.97 7.60 -52.49 -0.40 0.58 16 44 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.13 1.41 7.61 -52.48 -0.40 1.01 16 LS Contribution 376.58 15.07 5.67 5.67 Total: -1.00 -31.86 376.58 -8.48 -40.34 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -6.39 Total: 7.89 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -3.18 Total: -4.54 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: -0.01 Total: -52.20 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.08 Total: -9.10 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.07 Total: -4.26 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.71 Total: 16.19 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.86 -8.48 -40.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989169310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.012 kcal (2) G-P(sol) polarization free energy of solvation -31.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds