Wall clock time and date at job start Tue Mar 31 2020 21:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.41304 * 2 1 4 4 C 1.54909 * 110.36788 * 237.70367 * 2 1 3 5 5 C 1.55160 * 101.57919 * 204.14986 * 4 2 1 6 6 H 1.08998 * 110.72212 * 276.96227 * 5 4 2 7 7 N 1.46494 * 110.71850 * 153.86334 * 5 4 2 8 8 C 1.36936 * 119.99935 * 155.00017 * 7 5 4 9 9 H 1.08001 * 120.00128 * 0.02562 * 8 7 5 10 10 C 1.38819 * 120.00114 * 179.97438 * 8 7 5 11 11 N 1.31618 * 119.99957 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 119.99908 * 0.02562 * 10 8 7 13 13 H 1.48504 * 109.47363 * 89.99641 * 12 10 8 14 14 H 1.48499 * 109.47049 * 209.99698 * 12 10 8 15 15 H 1.48500 * 109.47219 * 329.99802 * 12 10 8 16 16 C 1.54338 * 103.01873 * 35.30715 * 5 4 2 17 17 N 1.47013 * 107.26881 * 338.13791 * 16 5 4 18 18 C 1.34773 * 125.65133 * 178.84622 * 17 16 5 19 19 O 1.21281 * 120.00635 * 179.69044 * 18 17 16 20 20 C 1.50698 * 119.99783 * 359.69845 * 18 17 16 21 21 C 1.50707 * 109.47247 * 179.97438 * 20 18 17 22 22 C 1.38256 * 120.00111 * 269.97936 * 21 20 18 23 23 C 1.38208 * 119.99998 * 179.82904 * 22 21 20 24 24 C 1.38260 * 120.00082 * 0.45007 * 23 22 21 25 25 C 1.38212 * 119.99650 * 359.50197 * 24 23 22 26 26 C 1.50707 * 119.99857 * 180.25737 * 25 24 23 27 27 F 1.39901 * 109.46852 * 30.00631 * 26 25 24 28 28 F 1.39903 * 109.46640 * 150.00469 * 26 25 24 29 29 C 1.38216 * 119.99835 * 89.99982 * 21 20 18 30 30 H 1.09003 * 109.47227 * 299.15917 * 1 2 3 31 31 H 1.08999 * 109.47073 * 59.16258 * 1 2 3 32 32 H 1.09000 * 109.46680 * 179.16347 * 1 2 3 33 33 H 1.08993 * 111.00091 * 322.21957 * 4 2 1 34 34 H 1.08994 * 111.00264 * 86.07708 * 4 2 1 35 35 H 0.97000 * 120.00567 * 335.00421 * 7 5 4 36 36 H 0.97004 * 120.00064 * 180.02562 * 11 10 8 37 37 H 1.09009 * 109.98887 * 218.66073 * 16 5 4 38 38 H 1.09003 * 109.77749 * 97.49997 * 16 5 4 39 39 H 1.09005 * 109.47656 * 59.99829 * 20 18 17 40 40 H 1.08992 * 109.47409 * 299.99420 * 20 18 17 41 41 H 1.07999 * 120.00037 * 359.97438 * 22 21 20 42 42 H 1.08004 * 120.00265 * 180.23005 * 23 22 21 43 43 H 1.08002 * 120.00476 * 179.78830 * 24 23 22 44 44 H 1.08996 * 109.47180 * 270.00044 * 26 25 24 45 45 H 1.08005 * 120.00025 * 359.97438 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0692 -0.7759 -1.2276 5 6 3.4778 -1.1997 -0.7340 6 1 4.1952 -0.3912 -0.8749 7 7 3.9251 -2.4128 -1.4228 8 6 5.2632 -2.6762 -1.5462 9 1 5.9888 -1.9898 -1.1355 10 6 5.6870 -3.8261 -2.1984 11 7 6.9731 -4.0789 -2.3175 12 14 4.4319 -5.0136 -2.9082 13 1 4.1252 -4.6305 -4.3098 14 1 4.9842 -6.3918 -2.8814 15 1 3.1886 -4.9627 -2.0978 16 6 3.2525 -1.4723 0.7682 17 7 2.0431 -0.7383 1.1684 18 6 1.4972 -0.7362 2.4006 19 8 0.4966 -0.0867 2.6195 20 6 2.1301 -1.5409 3.5065 21 6 1.3323 -1.3680 4.7733 22 6 1.6435 -0.3474 5.6525 23 6 0.9097 -0.1867 6.8125 24 6 -0.1298 -1.0524 7.0985 25 6 -0.4415 -2.0722 6.2192 26 6 -1.5782 -3.0123 6.5280 27 9 -2.5472 -2.3407 7.2811 28 9 -2.1472 -3.4644 5.3325 29 6 0.2898 -2.2302 5.0565 30 1 -0.3634 0.5007 0.8974 31 1 -0.3633 0.5268 -0.8824 32 1 -0.3633 -1.0276 -0.0150 33 1 1.4512 -1.6481 -1.4406 34 1 2.1399 -0.1264 -2.1000 35 1 3.2734 -3.0295 -1.7915 36 1 7.2693 -4.8822 -2.7735 37 1 4.1081 -1.1187 1.3436 38 1 3.1090 -2.5404 0.9318 39 1 3.1505 -1.1942 3.6700 40 1 2.1447 -2.5942 3.2268 41 1 2.4586 0.3259 5.4315 42 1 1.1504 0.6129 7.4975 43 1 -0.7011 -0.9291 8.0067 44 1 -1.2019 -3.8632 7.0958 45 1 0.0466 -3.0275 4.3697 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989169310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:51 Heat of formation + Delta-G solvation = -113.045502 kcal Electronic energy + Delta-G solvation = -28996.670403 eV Core-core repulsion = 24649.196992 eV Total energy + Delta-G solvation = -4347.473411 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.01309 -48.04743 -41.43874 -40.22229 -38.66490 -36.05749 -34.37623 -33.50749 -32.89706 -32.47234 -30.53123 -28.69026 -27.13646 -26.65254 -25.52493 -23.64904 -22.98234 -22.03196 -21.77907 -19.94121 -19.63776 -18.45384 -18.38963 -18.16095 -17.94051 -17.45430 -16.89726 -16.58892 -16.52929 -16.01221 -15.59633 -15.25077 -15.05332 -14.94047 -14.77022 -14.51284 -14.49267 -14.40640 -14.01759 -13.98826 -13.68823 -13.53929 -13.35401 -13.19890 -13.04535 -12.97519 -12.87479 -12.80280 -12.40313 -12.20263 -12.10065 -11.96153 -11.82093 -11.80050 -11.54946 -11.04569 -10.64889 -9.96235 -9.76957 -9.62138 -9.35736 -8.00765 -5.35850 0.13919 0.31520 1.41412 1.43255 1.50298 1.62461 1.98299 2.49898 2.60309 2.82102 3.24083 3.29078 3.39764 3.46961 3.67467 3.74182 3.83500 3.94665 3.98718 4.01747 4.12030 4.13770 4.24543 4.32873 4.36446 4.44262 4.47832 4.54858 4.62773 4.72669 4.79048 4.87063 4.88069 4.99738 5.10604 5.13672 5.23934 5.29445 5.33457 5.39279 5.51890 5.54406 5.79480 5.90417 6.22916 6.55890 7.07735 7.18078 7.82428 8.00483 9.20029 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014123 B = 0.002578 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.075894 B =10860.433214 C =11251.934616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.135 3.865 3 H 0.084 0.916 4 C -0.129 4.129 5 C 0.168 3.832 6 H 0.073 0.927 7 N -0.740 5.740 8 C -0.230 4.230 9 H 0.065 0.935 10 C -0.058 4.058 11 N -0.981 5.981 12 Si 0.948 3.052 13 H -0.281 1.281 14 H -0.300 1.300 15 H -0.252 1.252 16 C 0.084 3.916 17 N -0.611 5.611 18 C 0.528 3.472 19 O -0.567 6.567 20 C -0.098 4.098 21 C -0.074 4.074 22 C -0.097 4.097 23 C -0.120 4.120 24 C -0.094 4.094 25 C -0.180 4.180 26 C 0.311 3.689 27 F -0.209 7.209 28 F -0.215 7.215 29 C -0.090 4.090 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.367 0.633 36 H 0.257 0.743 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.122 0.878 40 H 0.112 0.888 41 H 0.138 0.862 42 H 0.154 0.846 43 H 0.148 0.852 44 H 0.161 0.839 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.259 6.284 18.562 24.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.032 3.968 3 H 0.102 0.898 4 C -0.168 4.168 5 C 0.059 3.941 6 H 0.091 0.909 7 N -0.382 5.382 8 C -0.361 4.361 9 H 0.083 0.917 10 C -0.250 4.250 11 N -0.631 5.631 12 Si 0.776 3.224 13 H -0.207 1.207 14 H -0.227 1.227 15 H -0.176 1.176 16 C -0.042 4.042 17 N -0.345 5.345 18 C 0.318 3.682 19 O -0.447 6.447 20 C -0.137 4.137 21 C -0.075 4.075 22 C -0.115 4.115 23 C -0.138 4.138 24 C -0.112 4.112 25 C -0.181 4.181 26 C 0.258 3.742 27 F -0.190 7.190 28 F -0.196 7.196 29 C -0.108 4.108 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.118 0.882 35 H 0.201 0.799 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.140 0.860 40 H 0.130 0.870 41 H 0.156 0.844 42 H 0.172 0.828 43 H 0.165 0.835 44 H 0.178 0.822 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.620 6.647 18.736 25.283 hybrid contribution -0.255 -1.045 -0.857 1.375 sum -15.875 5.602 17.880 24.558 Atomic orbital electron populations 1.22053 0.93902 1.01853 1.03325 1.21937 0.95028 0.95743 0.84042 0.89835 1.23136 0.95458 1.00682 0.97496 1.21318 0.94898 0.88708 0.89206 0.90851 1.42692 1.03316 1.24586 1.67584 1.19046 0.83346 1.04535 1.29155 0.91654 1.25430 0.97288 1.00358 1.01947 1.69866 1.14950 1.28637 1.49645 0.85514 0.79595 0.78314 0.78934 1.20682 1.22705 1.17631 1.22935 0.86086 0.96400 0.98747 1.48668 1.28255 1.48371 1.09217 1.20522 0.83639 0.81632 0.82432 1.90638 1.26564 1.45266 1.82237 1.20708 1.00654 1.02232 0.90120 1.19403 0.96480 0.96284 0.95294 1.21409 0.99915 0.96292 0.93925 1.21426 0.95182 0.99720 0.97466 1.21172 0.97259 0.93288 0.99509 1.20531 0.99321 1.00241 0.97994 1.20720 0.81566 0.93657 0.78303 1.92968 1.66582 1.83064 1.76368 1.92977 1.86806 1.90033 1.49817 1.20847 0.94526 0.99649 0.95805 0.91541 0.90208 0.93853 0.90865 0.88216 0.79905 0.93382 0.90857 0.91627 0.85963 0.87020 0.84397 0.82792 0.83472 0.82175 0.85720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.86 8.71 71.98 0.63 -3.23 16 2 C 0.14 3.42 3.76 45.47 0.17 3.59 16 3 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 4 C -0.13 -3.35 6.13 31.99 0.20 -3.15 16 5 C 0.17 5.42 3.61 46.19 0.17 5.59 16 6 H 0.07 2.43 8.09 -2.39 -0.02 2.41 16 7 N -0.74 -30.53 4.96 -317.31 -1.57 -32.11 16 8 C -0.23 -11.92 10.44 84.04 0.88 -11.04 16 9 H 0.07 3.69 8.06 -2.91 -0.02 3.67 16 10 C -0.06 -3.23 5.50 84.86 0.47 -2.76 16 11 N -0.98 -59.94 13.97 21.65 0.30 -59.63 16 12 Si 0.95 42.94 27.74 68.60 1.90 44.84 16 13 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 14 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 15 H -0.25 -10.20 6.52 99.48 0.65 -9.55 16 16 C 0.08 2.40 6.25 86.74 0.54 2.95 16 17 N -0.61 -16.47 3.24 -788.13 -2.55 -19.03 16 18 C 0.53 14.58 7.62 87.66 0.67 15.25 16 19 O -0.57 -18.89 13.69 -3.03 -0.04 -18.93 16 20 C -0.10 -2.10 5.02 29.10 0.15 -1.96 16 21 C -0.07 -1.63 4.37 -19.86 -0.09 -1.72 16 22 C -0.10 -1.87 9.70 22.27 0.22 -1.65 16 23 C -0.12 -1.97 10.05 22.27 0.22 -1.75 16 24 C -0.09 -1.60 9.40 22.27 0.21 -1.39 16 25 C -0.18 -3.51 5.73 -19.86 -0.11 -3.63 16 26 C 0.31 5.18 5.65 71.24 0.40 5.59 16 27 F -0.21 -3.98 16.48 44.97 0.74 -3.24 16 28 F -0.21 -4.79 16.48 44.97 0.74 -4.05 16 29 C -0.09 -2.00 9.05 22.27 0.20 -1.80 16 30 H 0.07 1.95 5.89 -2.39 -0.01 1.94 16 31 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.07 1.95 7.92 -2.39 -0.02 1.93 16 34 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.37 14.79 5.62 -92.71 -0.52 14.27 16 36 H 0.26 15.10 8.31 -92.71 -0.77 14.32 16 37 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 38 H 0.07 2.00 8.03 -2.39 -0.02 1.98 16 39 H 0.12 2.16 8.09 -2.38 -0.02 2.14 16 40 H 0.11 2.21 8.09 -2.39 -0.02 2.20 16 41 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 42 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 43 H 0.15 1.88 7.60 -2.91 -0.02 1.86 16 44 H 0.16 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.12 2.74 7.61 -2.91 -0.02 2.72 16 Total: -1.00 -69.29 376.58 4.86 -64.43 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: 0.43 Total: 28.83 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: 4.91 Total: -1.12 kcal Atomic # 7 Polarization: -106.94 SS G_CDS: -3.83 Total: -110.77 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.04 Total: -18.93 kcal Atomic # 9 Polarization: -8.77 SS G_CDS: 1.48 Total: -7.28 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.90 Total: 44.84 kcal Total: -69.29 4.86 -64.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989169310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.614 kcal (2) G-P(sol) polarization free energy of solvation -69.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds