Wall clock time and date at job start Tue Mar 31 2020 21:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.87171 * 2 1 4 4 C 1.54324 * 109.88351 * 238.82598 * 2 1 3 5 5 C 1.55154 * 102.93928 * 262.77576 * 4 2 1 6 6 H 1.09003 * 111.00672 * 82.57101 * 5 4 2 7 7 N 1.46499 * 111.00374 * 206.38385 * 5 4 2 8 8 C 1.36942 * 120.00234 * 204.99929 * 7 5 4 9 9 H 1.07997 * 119.99687 * 359.97438 * 8 7 5 10 10 C 1.38805 * 119.99968 * 180.02562 * 8 7 5 11 11 N 1.31622 * 120.00338 * 359.97438 * 10 8 7 12 12 Si 1.86809 * 119.99921 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47357 * 89.99712 * 12 10 8 14 14 H 1.48506 * 109.47049 * 209.99997 * 12 10 8 15 15 H 1.48500 * 109.46822 * 329.99664 * 12 10 8 16 16 C 1.55132 * 101.48912 * 324.33215 * 5 4 2 17 17 N 1.47020 * 109.88577 * 121.01571 * 2 1 3 18 18 C 1.34780 * 125.64476 * 300.44432 * 17 2 1 19 19 O 1.21280 * 120.00423 * 359.97438 * 18 17 2 20 20 C 1.50701 * 119.99795 * 179.97438 * 18 17 2 21 21 C 1.50703 * 109.47064 * 179.97438 * 20 18 17 22 22 C 1.38234 * 119.99770 * 269.72517 * 21 20 18 23 23 C 1.38235 * 119.99869 * 179.74639 * 22 21 20 24 24 C 1.38241 * 119.99812 * 0.54713 * 23 22 21 25 25 C 1.50694 * 119.99838 * 179.72541 * 24 23 22 26 26 F 1.39905 * 109.47474 * 29.98091 * 25 24 23 27 27 F 1.39903 * 109.47208 * 149.97876 * 25 24 23 28 28 C 1.38227 * 120.00044 * 359.70483 * 24 23 22 29 29 C 1.38232 * 119.99860 * 89.99959 * 21 20 18 30 30 H 1.09001 * 109.46763 * 300.43938 * 1 2 3 31 31 H 1.08996 * 109.47067 * 60.43506 * 1 2 3 32 32 H 1.08995 * 109.46863 * 180.43683 * 1 2 3 33 33 H 1.09005 * 110.72039 * 21.13317 * 4 2 1 34 34 H 1.08998 * 110.72182 * 144.23136 * 4 2 1 35 35 H 0.97004 * 120.00201 * 25.00142 * 7 5 4 36 36 H 0.97003 * 120.00239 * 179.97438 * 11 10 8 37 37 H 1.09004 * 110.49262 * 278.45625 * 16 5 4 38 38 H 1.08995 * 110.34714 * 156.06592 * 16 5 4 39 39 H 1.09002 * 109.47060 * 299.99722 * 20 18 17 40 40 H 1.09001 * 109.47380 * 59.99809 * 20 18 17 41 41 H 1.08001 * 120.00330 * 359.97438 * 22 21 20 42 42 H 1.08002 * 120.00314 * 180.27289 * 23 22 21 43 43 H 1.09000 * 109.47481 * 269.98320 * 25 24 23 44 44 H 1.07996 * 120.00251 * 179.97438 * 28 24 23 45 45 H 1.07998 * 120.00407 * 0.02562 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0549 -0.7512 -1.2417 5 6 2.3519 -2.1704 -0.6893 6 1 1.4452 -2.7745 -0.6565 7 7 3.3930 -2.8336 -1.4782 8 6 3.4559 -4.2010 -1.5173 9 1 2.7381 -4.7905 -0.9663 10 6 4.4427 -4.8293 -2.2643 11 7 5.3178 -4.1109 -2.9355 12 14 4.5279 -6.6947 -2.3183 13 1 3.7029 -7.1955 -3.4468 14 1 5.9379 -7.1205 -2.5087 15 1 4.0110 -7.2509 -1.0421 16 6 2.8613 -1.8455 0.7395 17 7 2.0301 -0.7124 1.1849 18 6 1.7754 -0.3810 2.4662 19 8 1.0792 0.5799 2.7172 20 6 2.3557 -1.2044 3.5871 21 6 1.9237 -0.6269 4.9103 22 6 2.6996 0.3339 5.5314 23 6 2.3007 0.8674 6.7427 24 6 1.1317 0.4319 7.3383 25 6 0.7000 1.0091 8.6617 26 9 1.1570 2.3272 8.7670 27 9 -0.6964 0.9917 8.7449 28 6 0.3585 -0.5326 6.7197 29 6 0.7545 -1.0621 5.5057 30 1 -0.3633 0.5207 0.8860 31 1 -0.3633 0.5070 -0.8938 32 1 -0.3633 -1.0276 0.0078 33 1 1.2918 -0.7919 -2.0190 34 1 2.9639 -0.2835 -1.6197 35 1 4.0380 -2.3041 -1.9728 36 1 6.0077 -4.5500 -3.4573 37 1 3.9124 -1.5578 0.7136 38 1 2.7179 -2.7028 1.3970 39 1 2.0001 -2.2315 3.5051 40 1 3.4437 -1.1903 3.5227 41 1 3.6156 0.6704 5.0686 42 1 2.9046 1.6212 7.2259 43 1 1.1197 0.4133 9.4723 44 1 -0.5546 -0.8731 7.1852 45 1 0.1508 -1.8162 5.0228 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989169415.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:57 Heat of formation + Delta-G solvation = -102.445394 kcal Electronic energy + Delta-G solvation = -28576.896347 eV Core-core repulsion = 24229.882591 eV Total energy + Delta-G solvation = -4347.013756 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.28475 -47.30441 -40.30864 -39.30135 -37.39141 -34.25165 -33.62653 -31.79944 -31.34692 -31.21304 -28.98105 -28.33360 -25.52472 -25.35373 -23.90984 -23.02952 -22.22180 -21.11062 -20.13097 -18.77136 -17.88563 -17.74682 -17.47209 -17.42823 -16.92636 -15.88955 -15.74192 -15.20794 -15.11693 -14.65621 -14.56376 -14.17195 -14.08528 -13.84246 -13.49367 -13.43526 -13.40025 -13.22656 -13.02102 -12.99260 -12.54253 -12.48799 -12.25084 -12.21317 -11.82562 -11.75287 -11.27177 -11.24176 -11.15248 -11.02419 -10.81113 -10.69293 -10.31398 -10.06948 -9.84987 -9.72652 -9.17131 -9.10277 -8.96958 -8.40373 -7.16427 -5.91921 -3.23229 0.86317 1.16173 2.76860 3.06570 3.34545 3.39612 3.41568 3.41794 3.53474 3.87651 4.25818 4.44908 4.51573 4.58640 4.66998 4.69767 4.74332 5.07477 5.09087 5.14379 5.16319 5.24641 5.37459 5.41634 5.43469 5.54337 5.57903 5.63128 5.78506 5.80619 5.81040 6.02049 6.06824 6.08375 6.11511 6.16918 6.24564 6.34781 6.39620 6.48695 6.59703 6.66616 6.78397 7.56292 7.76076 8.25103 8.32969 9.37471 9.90807 10.25521 11.29880 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018110 B = 0.002180 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.766366 B =12839.044072 C =13639.454631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 H 0.069 0.931 4 C -0.139 4.139 5 C 0.174 3.826 6 H 0.068 0.932 7 N -0.712 5.712 8 C -0.250 4.250 9 H 0.073 0.927 10 C -0.008 4.008 11 N -0.929 5.929 12 Si 0.908 3.092 13 H -0.288 1.288 14 H -0.291 1.291 15 H -0.281 1.281 16 C 0.070 3.930 17 N -0.609 5.609 18 C 0.529 3.471 19 O -0.543 6.543 20 C -0.105 4.105 21 C -0.038 4.038 22 C -0.106 4.106 23 C -0.085 4.085 24 C -0.177 4.177 25 C 0.315 3.685 26 F -0.201 7.201 27 F -0.201 7.201 28 C -0.085 4.085 29 C -0.106 4.106 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.387 0.613 36 H 0.257 0.743 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.121 0.879 44 H 0.130 0.870 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.183 8.309 19.166 22.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.087 0.913 4 C -0.178 4.178 5 C 0.062 3.938 6 H 0.086 0.914 7 N -0.351 5.351 8 C -0.381 4.381 9 H 0.090 0.910 10 C -0.205 4.205 11 N -0.576 5.576 12 Si 0.739 3.261 13 H -0.216 1.216 14 H -0.217 1.217 15 H -0.206 1.206 16 C -0.056 4.056 17 N -0.343 5.343 18 C 0.317 3.683 19 O -0.421 6.421 20 C -0.145 4.145 21 C -0.038 4.038 22 C -0.124 4.124 23 C -0.103 4.103 24 C -0.178 4.178 25 C 0.261 3.739 26 F -0.182 7.182 27 F -0.182 7.182 28 C -0.103 4.103 29 C -0.124 4.124 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.222 0.778 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.146 0.854 42 H 0.148 0.852 43 H 0.138 0.862 44 H 0.148 0.852 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.584 8.661 19.358 22.522 hybrid contribution 0.383 -0.810 -0.291 0.942 sum -7.201 7.851 19.067 21.841 Atomic orbital electron populations 1.22129 0.95079 1.02235 1.02431 1.21486 0.94362 0.95882 0.84691 0.91343 1.23033 1.01733 0.97149 0.95844 1.21313 0.92787 0.91248 0.88468 0.91389 1.42336 1.33391 1.04055 1.55355 1.19241 1.11280 0.82470 1.25121 0.90951 1.24779 0.97912 0.98042 0.99718 1.69658 1.18902 1.34248 1.34777 0.86185 0.76926 0.85223 0.77777 1.21570 1.21683 1.20635 1.23581 0.94901 0.87094 0.99993 1.48642 1.50175 1.31033 1.04494 1.20012 0.80930 0.84986 0.82344 1.90691 1.39088 1.28931 1.83432 1.20732 1.03066 1.00449 0.90216 1.19504 0.94517 0.95530 0.94286 1.20992 1.00228 0.96238 0.94970 1.20841 0.95376 0.98684 0.95423 1.20350 0.98554 1.01507 0.97354 1.20304 0.75731 0.80225 0.97593 1.92995 1.88576 1.39358 1.97267 1.92995 1.31230 1.96543 1.97426 1.20839 0.98759 0.95488 0.95240 1.20992 0.95915 1.00432 0.95055 0.91504 0.92003 0.92484 0.90176 0.90610 0.77836 0.93276 0.91162 0.91244 0.87617 0.87661 0.85429 0.85206 0.86226 0.85204 0.85415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 9.06 37.16 0.34 -1.83 16 2 C 0.14 2.00 3.49 -66.95 -0.23 1.77 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 4 C -0.14 -2.09 6.13 -24.90 -0.15 -2.24 16 5 C 0.17 3.08 3.73 -65.66 -0.24 2.84 16 6 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 7 N -0.71 -16.11 5.24 -51.24 -0.27 -16.38 16 8 C -0.25 -6.38 9.96 -15.06 -0.15 -6.52 16 9 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 10 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 11 N -0.93 -26.42 13.06 55.49 0.72 -25.69 16 12 Si 0.91 21.08 29.55 -169.99 -5.02 16.06 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 16 C 0.07 1.09 6.40 -2.41 -0.02 1.07 16 17 N -0.61 -8.94 3.08 -162.88 -0.50 -9.44 16 18 C 0.53 7.75 7.62 -10.98 -0.08 7.66 16 19 O -0.54 -9.55 14.93 5.56 0.08 -9.47 16 20 C -0.11 -1.19 4.83 -29.03 -0.14 -1.33 16 21 C -0.04 -0.43 4.37 -104.62 -0.46 -0.89 16 22 C -0.11 -1.15 9.70 -39.58 -0.38 -1.54 16 23 C -0.09 -0.86 9.40 -39.58 -0.37 -1.23 16 24 C -0.18 -1.75 5.73 -104.63 -0.60 -2.35 16 25 C 0.31 2.62 5.65 36.00 0.20 2.83 16 26 F -0.20 -2.01 16.48 2.25 0.04 -1.97 16 27 F -0.20 -2.01 16.48 2.25 0.04 -1.97 16 28 C -0.09 -0.86 9.40 -39.58 -0.37 -1.23 16 29 C -0.11 -1.15 9.70 -39.58 -0.38 -1.53 16 30 H 0.07 1.00 6.75 -51.93 -0.35 0.65 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.14 7.83 -51.93 -0.41 0.74 16 34 H 0.08 1.16 8.01 -51.93 -0.42 0.74 16 35 H 0.39 9.40 7.77 -40.82 -0.32 9.08 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.07 1.02 7.48 -51.93 -0.39 0.63 16 39 H 0.11 1.05 7.80 -51.93 -0.40 0.64 16 40 H 0.11 1.05 8.08 -51.93 -0.42 0.63 16 41 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 42 H 0.13 1.08 7.60 -52.49 -0.40 0.68 16 43 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.13 1.08 7.60 -52.49 -0.40 0.68 16 45 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 LS Contribution 380.82 15.07 5.74 5.74 Total: -1.00 -30.79 380.82 -8.75 -39.54 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -6.43 Total: 8.42 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -3.15 Total: -4.83 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -0.05 Total: -51.51 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.08 Total: -9.47 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.07 Total: -3.94 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.79 -8.75 -39.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989169415.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.907 kcal (2) G-P(sol) polarization free energy of solvation -30.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds