Wall clock time and date at job start Tue Mar 31 2020 21:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.87171 * 2 1 4 4 C 1.54324 * 109.88351 * 238.82598 * 2 1 3 5 5 C 1.55154 * 102.93928 * 262.77576 * 4 2 1 6 6 H 1.09003 * 111.00672 * 82.57101 * 5 4 2 7 7 N 1.46499 * 111.00374 * 206.38385 * 5 4 2 8 8 C 1.36942 * 120.00234 * 204.99929 * 7 5 4 9 9 H 1.07997 * 119.99687 * 359.97438 * 8 7 5 10 10 C 1.38805 * 119.99968 * 180.02562 * 8 7 5 11 11 N 1.31622 * 120.00338 * 359.97438 * 10 8 7 12 12 Si 1.86809 * 119.99921 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47357 * 89.99712 * 12 10 8 14 14 H 1.48506 * 109.47049 * 209.99997 * 12 10 8 15 15 H 1.48500 * 109.46822 * 329.99664 * 12 10 8 16 16 C 1.55132 * 101.48912 * 324.33215 * 5 4 2 17 17 N 1.47020 * 109.88577 * 121.01571 * 2 1 3 18 18 C 1.34780 * 125.64476 * 300.44432 * 17 2 1 19 19 O 1.21280 * 120.00423 * 359.97438 * 18 17 2 20 20 C 1.50701 * 119.99795 * 179.97438 * 18 17 2 21 21 C 1.50703 * 109.47064 * 179.97438 * 20 18 17 22 22 C 1.38234 * 119.99770 * 269.72517 * 21 20 18 23 23 C 1.38235 * 119.99869 * 179.74639 * 22 21 20 24 24 C 1.38241 * 119.99812 * 0.54713 * 23 22 21 25 25 C 1.50694 * 119.99838 * 179.72541 * 24 23 22 26 26 F 1.39905 * 109.47474 * 29.98091 * 25 24 23 27 27 F 1.39903 * 109.47208 * 149.97876 * 25 24 23 28 28 C 1.38227 * 120.00044 * 359.70483 * 24 23 22 29 29 C 1.38232 * 119.99860 * 89.99959 * 21 20 18 30 30 H 1.09001 * 109.46763 * 300.43938 * 1 2 3 31 31 H 1.08996 * 109.47067 * 60.43506 * 1 2 3 32 32 H 1.08995 * 109.46863 * 180.43683 * 1 2 3 33 33 H 1.09005 * 110.72039 * 21.13317 * 4 2 1 34 34 H 1.08998 * 110.72182 * 144.23136 * 4 2 1 35 35 H 0.97004 * 120.00201 * 25.00142 * 7 5 4 36 36 H 0.97003 * 120.00239 * 179.97438 * 11 10 8 37 37 H 1.09004 * 110.49262 * 278.45625 * 16 5 4 38 38 H 1.08995 * 110.34714 * 156.06592 * 16 5 4 39 39 H 1.09002 * 109.47060 * 299.99722 * 20 18 17 40 40 H 1.09001 * 109.47380 * 59.99809 * 20 18 17 41 41 H 1.08001 * 120.00330 * 359.97438 * 22 21 20 42 42 H 1.08002 * 120.00314 * 180.27289 * 23 22 21 43 43 H 1.09000 * 109.47481 * 269.98320 * 25 24 23 44 44 H 1.07996 * 120.00251 * 179.97438 * 28 24 23 45 45 H 1.07998 * 120.00407 * 0.02562 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0549 -0.7512 -1.2417 5 6 2.3519 -2.1704 -0.6893 6 1 1.4452 -2.7745 -0.6565 7 7 3.3930 -2.8336 -1.4782 8 6 3.4559 -4.2010 -1.5173 9 1 2.7381 -4.7905 -0.9663 10 6 4.4427 -4.8293 -2.2643 11 7 5.3178 -4.1109 -2.9355 12 14 4.5279 -6.6947 -2.3183 13 1 3.7029 -7.1955 -3.4468 14 1 5.9379 -7.1205 -2.5087 15 1 4.0110 -7.2509 -1.0421 16 6 2.8613 -1.8455 0.7395 17 7 2.0301 -0.7124 1.1849 18 6 1.7754 -0.3810 2.4662 19 8 1.0792 0.5799 2.7172 20 6 2.3557 -1.2044 3.5871 21 6 1.9237 -0.6269 4.9103 22 6 2.6996 0.3339 5.5314 23 6 2.3007 0.8674 6.7427 24 6 1.1317 0.4319 7.3383 25 6 0.7000 1.0091 8.6617 26 9 1.1570 2.3272 8.7670 27 9 -0.6964 0.9917 8.7449 28 6 0.3585 -0.5326 6.7197 29 6 0.7545 -1.0621 5.5057 30 1 -0.3633 0.5207 0.8860 31 1 -0.3633 0.5070 -0.8938 32 1 -0.3633 -1.0276 0.0078 33 1 1.2918 -0.7919 -2.0190 34 1 2.9639 -0.2835 -1.6197 35 1 4.0380 -2.3041 -1.9728 36 1 6.0077 -4.5500 -3.4573 37 1 3.9124 -1.5578 0.7136 38 1 2.7179 -2.7028 1.3970 39 1 2.0001 -2.2315 3.5051 40 1 3.4437 -1.1903 3.5227 41 1 3.6156 0.6704 5.0686 42 1 2.9046 1.6212 7.2259 43 1 1.1197 0.4133 9.4723 44 1 -0.5546 -0.8731 7.1852 45 1 0.1508 -1.8162 5.0228 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989169415.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:56 Heat of formation + Delta-G solvation = -118.553623 kcal Electronic energy + Delta-G solvation = -28577.594852 eV Core-core repulsion = 24229.882591 eV Total energy + Delta-G solvation = -4347.712261 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.98411 -48.01712 -41.41241 -40.21557 -38.65584 -35.95915 -34.51461 -33.25240 -32.76610 -31.97358 -30.05056 -29.69061 -26.72168 -26.23585 -25.65808 -23.79617 -23.37372 -22.11405 -21.40231 -19.94085 -19.28327 -18.59964 -18.40507 -18.18972 -18.11762 -17.06900 -16.79340 -16.49576 -16.12156 -15.94625 -15.52444 -15.36353 -15.08292 -14.84204 -14.70400 -14.57870 -14.44610 -14.32307 -14.17137 -13.99202 -13.84310 -13.37064 -13.26334 -13.17696 -13.00837 -12.89788 -12.83276 -12.74830 -12.28819 -12.11491 -12.03186 -12.02690 -11.83397 -11.69558 -11.43897 -11.05074 -10.82698 -9.94598 -9.79842 -9.65750 -9.03085 -7.92975 -5.22756 0.07353 0.38477 1.52287 1.52907 1.60855 1.62308 1.97544 2.56906 2.62707 2.83997 3.26424 3.38995 3.47729 3.55950 3.67529 3.86749 3.92396 3.96633 3.98027 4.00516 4.06354 4.13206 4.33467 4.38034 4.40362 4.48584 4.52883 4.56287 4.66063 4.72698 4.78985 4.87715 4.92960 5.03291 5.04103 5.16272 5.25818 5.26455 5.35494 5.35738 5.47765 5.54945 5.57123 5.89653 6.27993 6.56876 7.16270 7.35934 8.07530 8.31180 9.29805 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018110 B = 0.002180 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.766366 B =12839.044072 C =13639.454631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.138 3.862 3 H 0.068 0.932 4 C -0.127 4.127 5 C 0.167 3.833 6 H 0.067 0.933 7 N -0.723 5.723 8 C -0.240 4.240 9 H 0.081 0.919 10 C -0.070 4.070 11 N -0.967 5.967 12 Si 0.968 3.032 13 H -0.291 1.291 14 H -0.300 1.300 15 H -0.266 1.266 16 C 0.085 3.915 17 N -0.609 5.609 18 C 0.528 3.472 19 O -0.574 6.574 20 C -0.099 4.099 21 C -0.055 4.055 22 C -0.119 4.119 23 C -0.092 4.092 24 C -0.183 4.183 25 C 0.313 3.687 26 F -0.212 7.212 27 F -0.211 7.211 28 C -0.092 4.092 29 C -0.117 4.117 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.377 0.623 36 H 0.251 0.749 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.136 0.864 42 H 0.144 0.856 43 H 0.163 0.837 44 H 0.145 0.855 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.980 7.883 20.685 23.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.035 3.965 3 H 0.086 0.914 4 C -0.166 4.166 5 C 0.057 3.943 6 H 0.085 0.915 7 N -0.362 5.362 8 C -0.372 4.372 9 H 0.099 0.901 10 C -0.263 4.263 11 N -0.617 5.617 12 Si 0.798 3.202 13 H -0.218 1.218 14 H -0.227 1.227 15 H -0.191 1.191 16 C -0.041 4.041 17 N -0.342 5.342 18 C 0.318 3.682 19 O -0.454 6.454 20 C -0.138 4.138 21 C -0.055 4.055 22 C -0.137 4.137 23 C -0.110 4.110 24 C -0.183 4.183 25 C 0.260 3.740 26 F -0.193 7.193 27 F -0.193 7.193 28 C -0.110 4.110 29 C -0.135 4.135 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.209 0.791 36 H 0.059 0.941 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.140 0.860 40 H 0.137 0.863 41 H 0.154 0.846 42 H 0.162 0.838 43 H 0.180 0.820 44 H 0.162 0.838 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.425 8.243 20.918 24.010 hybrid contribution 0.547 -0.583 -0.716 1.073 sum -7.878 7.660 20.202 22.997 Atomic orbital electron populations 1.22049 0.94163 1.02183 1.02610 1.21509 0.95030 0.95701 0.84266 0.91395 1.22928 1.01945 0.95365 0.96382 1.21472 0.91435 0.92214 0.89206 0.91469 1.42456 1.34268 1.03339 1.56153 1.19623 1.10277 0.83895 1.23390 0.90090 1.25505 0.98406 1.01838 1.00557 1.69803 1.19920 1.35545 1.36444 0.85225 0.76132 0.80839 0.78050 1.21815 1.22657 1.19102 1.23230 0.94389 0.87793 0.98654 1.48660 1.50026 1.30709 1.04854 1.20569 0.80228 0.84743 0.82656 1.90678 1.40507 1.30418 1.83773 1.20748 1.03712 1.00498 0.88859 1.19614 0.95155 0.96267 0.94506 1.21207 1.00692 0.96308 0.95452 1.21065 0.95761 0.98889 0.95313 1.20611 0.98384 1.01277 0.98064 1.20702 0.75179 0.80004 0.98136 1.92972 1.88645 1.40376 1.97293 1.92972 1.32280 1.96558 1.97455 1.21068 0.99301 0.95508 0.95117 1.21210 0.95955 1.00852 0.95521 0.93032 0.90128 0.92553 0.89158 0.90971 0.79089 0.94065 0.91914 0.89999 0.86030 0.86263 0.84640 0.83827 0.82022 0.83771 0.84516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 9.06 71.98 0.65 -3.22 16 2 C 0.14 3.79 3.49 45.34 0.16 3.95 16 3 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 4 C -0.13 -3.68 6.13 31.78 0.19 -3.48 16 5 C 0.17 5.70 3.73 46.46 0.17 5.87 16 6 H 0.07 2.32 8.09 -2.39 -0.02 2.30 16 7 N -0.72 -32.39 5.24 -316.02 -1.66 -34.04 16 8 C -0.24 -12.04 9.96 84.03 0.84 -11.20 16 9 H 0.08 3.85 7.83 -2.91 -0.02 3.83 16 10 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 11 N -0.97 -55.72 13.06 21.65 0.28 -55.43 16 12 Si 0.97 43.19 29.55 68.60 2.03 45.22 16 13 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 14 H -0.30 -13.69 7.11 99.48 0.71 -12.99 16 15 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 16 C 0.09 2.51 6.40 86.93 0.56 3.07 16 17 N -0.61 -17.02 3.08 -787.62 -2.42 -19.44 16 18 C 0.53 14.81 7.62 87.66 0.67 15.48 16 19 O -0.57 -19.78 14.93 -3.03 -0.05 -19.82 16 20 C -0.10 -2.07 4.83 29.10 0.14 -1.93 16 21 C -0.05 -1.19 4.37 -19.87 -0.09 -1.28 16 22 C -0.12 -2.45 9.70 22.27 0.22 -2.23 16 23 C -0.09 -1.74 9.40 22.27 0.21 -1.53 16 24 C -0.18 -3.33 5.73 -19.87 -0.11 -3.44 16 25 C 0.31 4.57 5.65 71.23 0.40 4.97 16 26 F -0.21 -3.90 16.48 44.97 0.74 -3.16 16 27 F -0.21 -3.89 16.48 44.97 0.74 -3.14 16 28 C -0.09 -1.72 9.40 22.27 0.21 -1.51 16 29 C -0.12 -2.40 9.70 22.27 0.22 -2.18 16 30 H 0.05 1.49 6.75 -2.39 -0.02 1.47 16 31 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.09 2.42 7.83 -2.38 -0.02 2.40 16 34 H 0.07 2.16 8.01 -2.39 -0.02 2.14 16 35 H 0.38 18.39 7.77 -92.71 -0.72 17.67 16 36 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 37 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 38 H 0.08 2.22 7.48 -2.39 -0.02 2.21 16 39 H 0.12 2.14 7.80 -2.39 -0.02 2.12 16 40 H 0.12 2.15 8.08 -2.39 -0.02 2.13 16 41 H 0.14 2.44 8.06 -2.91 -0.02 2.41 16 42 H 0.14 2.19 7.60 -2.91 -0.02 2.17 16 43 H 0.16 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.14 2.17 7.60 -2.91 -0.02 2.14 16 45 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -65.53 380.82 4.86 -60.68 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: 0.29 Total: 31.09 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: 4.90 Total: -1.94 kcal Atomic # 7 Polarization: -105.12 SS G_CDS: -3.80 Total: -108.92 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.05 Total: -19.82 kcal Atomic # 9 Polarization: -7.79 SS G_CDS: 1.48 Total: -6.31 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -65.53 4.86 -60.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989169415.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.875 kcal (2) G-P(sol) polarization free energy of solvation -65.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds