Wall clock time and date at job start Tue Mar 31 2020 21:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 110.00115 * 2 1 4 4 C 1.54323 * 109.88013 * 121.08950 * 2 1 3 5 5 C 1.55159 * 102.93952 * 141.60795 * 4 2 1 6 6 H 1.09001 * 111.00555 * 206.42158 * 5 4 2 7 7 N 1.46505 * 111.00280 * 82.61514 * 5 4 2 8 8 C 1.36932 * 120.00105 * 155.00234 * 7 5 4 9 9 H 1.08001 * 120.00053 * 359.97438 * 8 7 5 10 10 C 1.38810 * 120.00201 * 179.97438 * 8 7 5 11 11 N 1.31627 * 119.99833 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00474 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47217 * 89.99506 * 12 10 8 14 14 H 1.48501 * 109.47026 * 209.99892 * 12 10 8 15 15 H 1.48503 * 109.46840 * 329.99816 * 12 10 8 16 16 C 1.55128 * 101.48560 * 324.33397 * 5 4 2 17 17 N 1.47016 * 109.88364 * 238.89811 * 2 1 3 18 18 C 1.34779 * 125.64713 * 61.60425 * 17 2 1 19 19 O 1.21282 * 119.99926 * 0.02562 * 18 17 2 20 20 C 1.50699 * 120.00033 * 180.02562 * 18 17 2 21 21 C 1.50706 * 109.46817 * 180.02562 * 20 18 17 22 22 C 1.38231 * 119.99884 * 269.72397 * 21 20 18 23 23 C 1.38232 * 119.99941 * 179.77036 * 22 21 20 24 24 C 1.38241 * 119.99967 * 0.50748 * 23 22 21 25 25 C 1.50695 * 120.00121 * 179.72653 * 24 23 22 26 26 F 1.39905 * 109.47060 * 120.02100 * 25 24 23 27 27 F 1.39900 * 109.47213 * 240.02081 * 25 24 23 28 28 C 1.38238 * 119.99768 * 359.74620 * 24 23 22 29 29 C 1.38234 * 120.00037 * 0.02562 * 28 24 23 30 30 H 1.08995 * 109.47069 * 179.64773 * 1 2 3 31 31 H 1.09011 * 109.46588 * 299.64640 * 1 2 3 32 32 H 1.09001 * 109.47156 * 59.64137 * 1 2 3 33 33 H 1.08997 * 110.72395 * 259.97570 * 4 2 1 34 34 H 1.09007 * 110.72397 * 23.07074 * 4 2 1 35 35 H 0.97001 * 119.99779 * 334.99812 * 7 5 4 36 36 H 0.96999 * 119.99897 * 180.02562 * 11 10 8 37 37 H 1.09000 * 110.49572 * 278.45108 * 16 5 4 38 38 H 1.09000 * 110.33962 * 156.06031 * 16 5 4 39 39 H 1.09000 * 109.46670 * 60.00406 * 20 18 17 40 40 H 1.09000 * 109.47247 * 300.00119 * 20 18 17 41 41 H 1.07997 * 120.00101 * 0.02562 * 22 21 20 42 42 H 1.08002 * 120.00546 * 180.23234 * 23 22 21 43 43 H 1.09001 * 109.47304 * 0.02562 * 25 24 23 44 44 H 1.08003 * 119.99873 * 179.97438 * 28 24 23 45 45 H 1.07997 * 119.99984 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0548 -0.7494 1.2428 5 6 3.2876 -1.5142 0.6925 6 1 3.4852 -2.4110 1.2798 7 7 4.4677 -0.6471 0.6503 8 6 5.7218 -1.1946 0.6998 9 1 5.8410 -2.2657 0.7703 10 6 6.8399 -0.3731 0.6593 11 7 6.6947 0.9323 0.5729 12 14 8.5508 -1.1199 0.7274 13 1 9.0202 -1.4086 -0.6515 14 1 9.4827 -0.1638 1.3776 15 1 8.5095 -2.3810 1.5104 16 6 2.8098 -1.8826 -0.7367 17 7 2.0301 -0.7142 -1.1838 18 6 1.8074 -0.3623 -2.4656 19 8 1.1436 0.6209 -2.7180 20 6 2.3833 -1.1904 -3.5853 21 6 1.9912 -0.5868 -4.9094 22 6 0.8235 -0.9860 -5.5321 23 6 0.4614 -0.4289 -6.7444 24 6 1.2725 0.5196 -7.3389 25 6 0.8809 1.1224 -8.6634 26 9 0.7374 2.5068 -8.5215 27 9 1.8738 0.8512 -9.6109 28 6 2.4429 0.9149 -6.7186 29 6 2.8026 0.3613 -5.5041 30 1 -0.3633 -1.0276 -0.0063 31 1 -0.3633 0.5084 0.8933 32 1 -0.3633 0.5194 -0.8868 33 1 2.3529 -0.0458 2.0201 34 1 1.3039 -1.4436 1.6203 35 1 4.3606 0.3149 0.5874 36 1 7.4760 1.5064 0.5442 37 1 2.1800 -2.7719 -0.7112 38 1 3.6655 -2.0414 -1.3930 39 1 1.9970 -2.2076 -3.5205 40 1 3.4700 -1.2084 -3.5021 41 1 0.1919 -1.7300 -5.0697 42 1 -0.4528 -0.7380 -7.2292 43 1 -0.0641 0.6911 -8.9937 44 1 3.0768 1.6557 -7.1833 45 1 3.7172 0.6698 -5.0197 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989169416.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:00 Heat of formation + Delta-G solvation = -102.460676 kcal Electronic energy + Delta-G solvation = -29022.295592 eV Core-core repulsion = 24675.281174 eV Total energy + Delta-G solvation = -4347.014419 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.15487 -47.14325 -40.17890 -39.20889 -37.30149 -34.03596 -33.51433 -31.66397 -31.33362 -31.14227 -28.86684 -28.42373 -25.51464 -25.20194 -23.78782 -23.00796 -22.26244 -21.05087 -19.98920 -18.59161 -17.68174 -17.52396 -17.37642 -17.35438 -16.81738 -16.02826 -15.61372 -15.33380 -14.69641 -14.58732 -14.39294 -14.09084 -13.99582 -13.70366 -13.56279 -13.52187 -13.39269 -13.10715 -12.94071 -12.81955 -12.52173 -12.25892 -12.12648 -11.98511 -11.73164 -11.65446 -11.21265 -11.14927 -11.04160 -10.98446 -10.80044 -10.68389 -10.34943 -10.06386 -9.77762 -9.59953 -9.10302 -9.06337 -8.90619 -8.25643 -7.10110 -5.87904 -3.18938 0.96322 1.26954 2.94432 3.23110 3.35975 3.41407 3.43709 3.52776 3.63393 3.95353 4.33197 4.48139 4.64088 4.74759 4.78125 4.80932 4.86358 5.09637 5.18979 5.23610 5.27294 5.31574 5.47342 5.49136 5.52467 5.55229 5.64568 5.73512 5.76690 5.85012 5.89006 5.96481 6.12673 6.15950 6.18810 6.22178 6.37907 6.39373 6.46897 6.55443 6.65932 6.75389 6.79739 7.58491 7.92000 8.29117 8.49860 9.40989 9.96156 10.30615 11.33773 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011740 B = 0.002817 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.438022 B = 9937.543844 C =11518.748136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.139 3.861 3 H 0.073 0.927 4 C -0.140 4.140 5 C 0.169 3.831 6 H 0.074 0.926 7 N -0.711 5.711 8 C -0.250 4.250 9 H 0.073 0.927 10 C -0.008 4.008 11 N -0.927 5.927 12 Si 0.907 3.093 13 H -0.289 1.289 14 H -0.291 1.291 15 H -0.281 1.281 16 C 0.067 3.933 17 N -0.599 5.599 18 C 0.532 3.468 19 O -0.545 6.545 20 C -0.105 4.105 21 C -0.033 4.033 22 C -0.110 4.110 23 C -0.086 4.086 24 C -0.178 4.178 25 C 0.314 3.686 26 F -0.200 7.200 27 F -0.202 7.202 28 C -0.077 4.077 29 C -0.104 4.104 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.386 0.614 36 H 0.257 0.743 37 H 0.056 0.944 38 H 0.079 0.921 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.116 0.884 44 H 0.127 0.873 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.521 -5.935 -12.054 19.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.036 3.964 3 H 0.091 0.909 4 C -0.179 4.179 5 C 0.056 3.944 6 H 0.092 0.908 7 N -0.351 5.351 8 C -0.381 4.381 9 H 0.091 0.909 10 C -0.205 4.205 11 N -0.574 5.574 12 Si 0.738 3.262 13 H -0.216 1.216 14 H -0.217 1.217 15 H -0.207 1.207 16 C -0.060 4.060 17 N -0.332 5.332 18 C 0.321 3.679 19 O -0.423 6.423 20 C -0.144 4.144 21 C -0.034 4.034 22 C -0.128 4.128 23 C -0.104 4.104 24 C -0.179 4.179 25 C 0.261 3.739 26 F -0.182 7.182 27 F -0.183 7.183 28 C -0.095 4.095 29 C -0.122 4.122 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.220 0.780 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.119 0.881 40 H 0.127 0.873 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.133 0.867 44 H 0.145 0.855 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.674 -5.440 -12.248 19.873 hybrid contribution 1.129 0.055 -0.048 1.132 sum -13.545 -5.385 -12.297 19.070 Atomic orbital electron populations 1.22127 0.95510 1.01616 1.02433 1.21464 0.93476 0.96731 0.84776 0.90907 1.23090 0.98289 1.00064 0.96434 1.21351 0.87005 0.94409 0.91587 0.90814 1.42337 1.00069 1.05511 1.87152 1.19228 0.83159 0.92013 1.43652 0.90937 1.24779 0.97984 0.95346 1.02380 1.69671 1.29131 1.02171 1.56460 0.86202 0.84454 0.77959 0.77597 1.21644 1.21737 1.20653 1.23471 0.94433 0.86851 1.01221 1.48418 1.51827 1.28504 1.04443 1.19907 0.80493 0.85236 0.82296 1.90684 1.40592 1.27659 1.83375 1.20727 1.03696 0.99775 0.90242 1.19514 0.94285 0.95338 0.94223 1.20931 0.96201 1.00602 0.95051 1.20805 0.98600 0.95460 0.95569 1.20257 0.98569 1.01904 0.97178 1.20381 0.90670 0.77299 0.85562 1.93021 1.96263 1.32646 1.96240 1.93008 1.65312 1.93519 1.66478 1.20909 0.95277 0.98334 0.94980 1.21092 1.00292 0.95928 0.94902 0.92955 0.92089 0.91634 0.89847 0.90818 0.77994 0.93326 0.92598 0.90258 0.88055 0.87306 0.85537 0.85458 0.86684 0.85539 0.85143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.10 37.16 0.34 -1.82 16 2 C 0.14 2.19 3.45 -66.95 -0.23 1.95 16 3 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 4 C -0.14 -2.06 6.07 -24.90 -0.15 -2.21 16 5 C 0.17 2.93 3.72 -65.66 -0.24 2.68 16 6 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 7 N -0.71 -16.31 5.25 -51.23 -0.27 -16.58 16 8 C -0.25 -6.39 9.96 -15.06 -0.15 -6.54 16 9 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 10 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 11 N -0.93 -27.00 13.06 55.49 0.72 -26.28 16 12 Si 0.91 21.35 29.55 -169.99 -5.02 16.33 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 16 C 0.07 1.01 6.41 -2.41 -0.02 0.99 16 17 N -0.60 -9.62 3.06 -162.89 -0.50 -10.12 16 18 C 0.53 8.80 7.64 -10.99 -0.08 8.72 16 19 O -0.54 -10.64 15.07 5.56 0.08 -10.56 16 20 C -0.10 -1.37 4.83 -29.03 -0.14 -1.51 16 21 C -0.03 -0.43 4.37 -104.62 -0.46 -0.89 16 22 C -0.11 -1.25 9.70 -39.59 -0.38 -1.63 16 23 C -0.09 -0.88 9.67 -39.58 -0.38 -1.26 16 24 C -0.18 -2.02 5.37 -104.62 -0.56 -2.58 16 25 C 0.31 3.05 5.45 36.00 0.20 3.24 16 26 F -0.20 -2.37 17.26 2.25 0.04 -2.33 16 27 F -0.20 -2.25 17.26 2.25 0.04 -2.21 16 28 C -0.08 -0.98 9.60 -39.58 -0.38 -1.36 16 29 C -0.10 -1.41 9.70 -39.58 -0.38 -1.80 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.73 8.14 -51.92 -0.42 0.30 16 32 H 0.06 1.02 6.88 -51.93 -0.36 0.66 16 33 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.07 0.90 7.85 -51.93 -0.41 0.49 16 35 H 0.39 9.79 7.86 -40.82 -0.32 9.47 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.08 1.29 7.48 -51.93 -0.39 0.90 16 39 H 0.10 1.05 8.08 -51.93 -0.42 0.63 16 40 H 0.11 1.43 7.80 -51.93 -0.40 1.02 16 41 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 42 H 0.13 0.87 7.95 -52.49 -0.42 0.45 16 43 H 0.12 0.68 7.88 -51.93 -0.41 0.27 16 44 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 45 H 0.13 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 383.26 15.07 5.78 5.78 Total: -1.00 -31.82 383.26 -8.73 -40.55 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -6.47 Total: 9.76 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -3.13 Total: -4.33 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: -0.04 Total: -52.97 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.08 Total: -10.56 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.08 Total: -4.54 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.82 -8.73 -40.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989169416.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.912 kcal (2) G-P(sol) polarization free energy of solvation -31.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds