Wall clock time and date at job start Tue Mar 31 2020 21:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 110.00115 * 2 1 4 4 C 1.54323 * 109.88013 * 121.08950 * 2 1 3 5 5 C 1.55159 * 102.93952 * 141.60795 * 4 2 1 6 6 H 1.09001 * 111.00555 * 206.42158 * 5 4 2 7 7 N 1.46505 * 111.00280 * 82.61514 * 5 4 2 8 8 C 1.36932 * 120.00105 * 155.00234 * 7 5 4 9 9 H 1.08001 * 120.00053 * 359.97438 * 8 7 5 10 10 C 1.38810 * 120.00201 * 179.97438 * 8 7 5 11 11 N 1.31627 * 119.99833 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00474 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47217 * 89.99506 * 12 10 8 14 14 H 1.48501 * 109.47026 * 209.99892 * 12 10 8 15 15 H 1.48503 * 109.46840 * 329.99816 * 12 10 8 16 16 C 1.55128 * 101.48560 * 324.33397 * 5 4 2 17 17 N 1.47016 * 109.88364 * 238.89811 * 2 1 3 18 18 C 1.34779 * 125.64713 * 61.60425 * 17 2 1 19 19 O 1.21282 * 119.99926 * 0.02562 * 18 17 2 20 20 C 1.50699 * 120.00033 * 180.02562 * 18 17 2 21 21 C 1.50706 * 109.46817 * 180.02562 * 20 18 17 22 22 C 1.38231 * 119.99884 * 269.72397 * 21 20 18 23 23 C 1.38232 * 119.99941 * 179.77036 * 22 21 20 24 24 C 1.38241 * 119.99967 * 0.50748 * 23 22 21 25 25 C 1.50695 * 120.00121 * 179.72653 * 24 23 22 26 26 F 1.39905 * 109.47060 * 120.02100 * 25 24 23 27 27 F 1.39900 * 109.47213 * 240.02081 * 25 24 23 28 28 C 1.38238 * 119.99768 * 359.74620 * 24 23 22 29 29 C 1.38234 * 120.00037 * 0.02562 * 28 24 23 30 30 H 1.08995 * 109.47069 * 179.64773 * 1 2 3 31 31 H 1.09011 * 109.46588 * 299.64640 * 1 2 3 32 32 H 1.09001 * 109.47156 * 59.64137 * 1 2 3 33 33 H 1.08997 * 110.72395 * 259.97570 * 4 2 1 34 34 H 1.09007 * 110.72397 * 23.07074 * 4 2 1 35 35 H 0.97001 * 119.99779 * 334.99812 * 7 5 4 36 36 H 0.96999 * 119.99897 * 180.02562 * 11 10 8 37 37 H 1.09000 * 110.49572 * 278.45108 * 16 5 4 38 38 H 1.09000 * 110.33962 * 156.06031 * 16 5 4 39 39 H 1.09000 * 109.46670 * 60.00406 * 20 18 17 40 40 H 1.09000 * 109.47247 * 300.00119 * 20 18 17 41 41 H 1.07997 * 120.00101 * 0.02562 * 22 21 20 42 42 H 1.08002 * 120.00546 * 180.23234 * 23 22 21 43 43 H 1.09001 * 109.47304 * 0.02562 * 25 24 23 44 44 H 1.08003 * 119.99873 * 179.97438 * 28 24 23 45 45 H 1.07997 * 119.99984 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0548 -0.7494 1.2428 5 6 3.2876 -1.5142 0.6925 6 1 3.4852 -2.4110 1.2798 7 7 4.4677 -0.6471 0.6503 8 6 5.7218 -1.1946 0.6998 9 1 5.8410 -2.2657 0.7703 10 6 6.8399 -0.3731 0.6593 11 7 6.6947 0.9323 0.5729 12 14 8.5508 -1.1199 0.7274 13 1 9.0202 -1.4086 -0.6515 14 1 9.4827 -0.1638 1.3776 15 1 8.5095 -2.3810 1.5104 16 6 2.8098 -1.8826 -0.7367 17 7 2.0301 -0.7142 -1.1838 18 6 1.8074 -0.3623 -2.4656 19 8 1.1436 0.6209 -2.7180 20 6 2.3833 -1.1904 -3.5853 21 6 1.9912 -0.5868 -4.9094 22 6 0.8235 -0.9860 -5.5321 23 6 0.4614 -0.4289 -6.7444 24 6 1.2725 0.5196 -7.3389 25 6 0.8809 1.1224 -8.6634 26 9 0.7374 2.5068 -8.5215 27 9 1.8738 0.8512 -9.6109 28 6 2.4429 0.9149 -6.7186 29 6 2.8026 0.3613 -5.5041 30 1 -0.3633 -1.0276 -0.0063 31 1 -0.3633 0.5084 0.8933 32 1 -0.3633 0.5194 -0.8868 33 1 2.3529 -0.0458 2.0201 34 1 1.3039 -1.4436 1.6203 35 1 4.3606 0.3149 0.5874 36 1 7.4760 1.5064 0.5442 37 1 2.1800 -2.7719 -0.7112 38 1 3.6655 -2.0414 -1.3930 39 1 1.9970 -2.2076 -3.5205 40 1 3.4700 -1.2084 -3.5021 41 1 0.1919 -1.7300 -5.0697 42 1 -0.4528 -0.7380 -7.2292 43 1 -0.0641 0.6911 -8.9937 44 1 3.0768 1.6557 -7.1833 45 1 3.7172 0.6698 -5.0197 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989169416.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:59 Heat of formation + Delta-G solvation = -120.457160 kcal Electronic energy + Delta-G solvation = -29023.075978 eV Core-core repulsion = 24675.281174 eV Total energy + Delta-G solvation = -4347.794805 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.96823 -47.97453 -41.36861 -40.22757 -38.63639 -35.78303 -34.52498 -33.17475 -32.73466 -32.03404 -30.15282 -29.71763 -26.70652 -26.13620 -25.66459 -23.90249 -23.43427 -22.08439 -21.31521 -19.84184 -19.25347 -18.51614 -18.32363 -18.19393 -18.08814 -17.35912 -16.65843 -16.53755 -16.12433 -15.80735 -15.44250 -15.35868 -15.24636 -14.93585 -14.84829 -14.51235 -14.39594 -14.36476 -14.12762 -13.84704 -13.51664 -13.43389 -13.25345 -13.18537 -12.96263 -12.88026 -12.77637 -12.65408 -12.24950 -12.19317 -12.07463 -12.04392 -11.83063 -11.62422 -11.46129 -11.04168 -10.83614 -9.96682 -9.87088 -9.61366 -8.96697 -7.93003 -5.21997 0.04660 0.36438 1.49517 1.49797 1.58323 1.67003 2.08318 2.57051 2.64920 2.77873 3.25961 3.38871 3.55996 3.58147 3.67644 3.86218 3.91648 3.96251 3.99861 4.04285 4.09060 4.16122 4.31614 4.38808 4.39919 4.50329 4.54301 4.61575 4.72125 4.77406 4.81626 4.86270 4.96953 4.99766 5.13076 5.19904 5.24100 5.25659 5.31999 5.37521 5.52819 5.55041 5.56936 5.88080 6.27795 6.65651 7.22270 7.34345 8.09953 8.31564 9.30337 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011740 B = 0.002817 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.438022 B = 9937.543844 C =11518.748136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.133 3.867 3 H 0.033 0.967 4 C -0.124 4.124 5 C 0.155 3.845 6 H 0.090 0.910 7 N -0.727 5.727 8 C -0.233 4.233 9 H 0.088 0.912 10 C -0.078 4.078 11 N -0.972 5.972 12 Si 0.969 3.031 13 H -0.291 1.291 14 H -0.304 1.304 15 H -0.263 1.263 16 C 0.077 3.923 17 N -0.602 5.602 18 C 0.525 3.475 19 O -0.582 6.582 20 C -0.096 4.096 21 C -0.051 4.051 22 C -0.114 4.114 23 C -0.078 4.078 24 C -0.186 4.186 25 C 0.312 3.688 26 F -0.216 7.216 27 F -0.212 7.212 28 C -0.097 4.097 29 C -0.130 4.130 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.113 0.887 35 H 0.368 0.632 36 H 0.247 0.753 37 H 0.100 0.900 38 H 0.066 0.934 39 H 0.135 0.865 40 H 0.101 0.899 41 H 0.152 0.848 42 H 0.171 0.829 43 H 0.166 0.834 44 H 0.123 0.877 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.975 -9.197 -12.454 22.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.030 3.970 3 H 0.052 0.948 4 C -0.163 4.163 5 C 0.045 3.955 6 H 0.108 0.892 7 N -0.365 5.365 8 C -0.365 4.365 9 H 0.105 0.895 10 C -0.270 4.270 11 N -0.623 5.623 12 Si 0.799 3.201 13 H -0.218 1.218 14 H -0.231 1.231 15 H -0.188 1.188 16 C -0.049 4.049 17 N -0.335 5.335 18 C 0.314 3.686 19 O -0.463 6.463 20 C -0.135 4.135 21 C -0.051 4.051 22 C -0.131 4.131 23 C -0.095 4.095 24 C -0.187 4.187 25 C 0.259 3.741 26 F -0.197 7.197 27 F -0.194 7.194 28 C -0.115 4.115 29 C -0.148 4.148 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.131 0.869 35 H 0.200 0.800 36 H 0.056 0.944 37 H 0.118 0.882 38 H 0.085 0.915 39 H 0.153 0.847 40 H 0.119 0.881 41 H 0.170 0.830 42 H 0.188 0.812 43 H 0.183 0.817 44 H 0.141 0.859 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -17.158 -8.780 -12.636 23.046 hybrid contribution 1.798 1.046 0.090 2.082 sum -15.360 -7.734 -12.546 21.287 Atomic orbital electron populations 1.22005 0.93373 1.02824 1.02155 1.21495 0.95112 0.95003 0.85379 0.94839 1.23009 0.97846 1.00033 0.95413 1.21706 0.86038 0.94368 0.93386 0.89241 1.42556 1.01199 1.05336 1.87400 1.19695 0.84167 0.92557 1.40052 0.89455 1.25547 1.01615 0.95704 1.04092 1.69844 1.29247 1.03599 1.59635 0.85204 0.80197 0.77423 0.77324 1.21826 1.23133 1.18771 1.23376 0.94790 0.87841 0.98850 1.48550 1.51632 1.28750 1.04525 1.20537 0.79965 0.85054 0.83003 1.90659 1.42402 1.29276 1.83936 1.20711 1.03027 1.00814 0.88957 1.19645 0.95300 0.95713 0.94451 1.21295 0.95514 1.00893 0.95429 1.21285 0.99433 0.93928 0.94903 1.20581 0.98013 1.02097 0.97985 1.20861 0.92181 0.76487 0.84607 1.92989 1.96340 1.34130 1.96285 1.92986 1.66179 1.93497 1.66720 1.21030 0.96504 0.98817 0.95119 1.21119 1.00556 0.97297 0.95823 0.90808 0.90405 0.93928 0.91107 0.86850 0.80042 0.94402 0.88164 0.91533 0.84667 0.88082 0.83009 0.81166 0.81731 0.85913 0.86744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.10 71.98 0.66 -3.04 16 2 C 0.13 4.12 3.45 45.34 0.16 4.28 16 3 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 4 C -0.12 -3.41 6.07 31.78 0.19 -3.22 16 5 C 0.16 5.06 3.72 46.46 0.17 5.23 16 6 H 0.09 2.68 8.09 -2.39 -0.02 2.66 16 7 N -0.73 -33.44 5.25 -316.00 -1.66 -35.09 16 8 C -0.23 -11.86 9.96 84.03 0.84 -11.02 16 9 H 0.09 4.11 7.83 -2.91 -0.02 4.09 16 10 C -0.08 -4.27 5.50 84.86 0.47 -3.81 16 11 N -0.97 -58.85 13.06 21.65 0.28 -58.57 16 12 Si 0.97 44.51 29.55 68.60 2.03 46.54 16 13 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 14 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 15 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 16 C 0.08 2.13 6.41 86.93 0.56 2.68 16 17 N -0.60 -18.73 3.06 -787.64 -2.41 -21.14 16 18 C 0.52 17.22 7.64 87.66 0.67 17.89 16 19 O -0.58 -23.20 15.07 -3.04 -0.05 -23.25 16 20 C -0.10 -2.42 4.83 29.10 0.14 -2.28 16 21 C -0.05 -1.31 4.37 -19.86 -0.09 -1.40 16 22 C -0.11 -2.31 9.70 22.27 0.22 -2.09 16 23 C -0.08 -1.35 9.67 22.27 0.22 -1.13 16 24 C -0.19 -3.97 5.37 -19.87 -0.11 -4.07 16 25 C 0.31 5.42 5.45 71.23 0.39 5.80 16 26 F -0.22 -4.93 17.26 44.97 0.78 -4.16 16 27 F -0.21 -4.48 17.26 44.97 0.78 -3.71 16 28 C -0.10 -2.55 9.60 22.27 0.21 -2.33 16 29 C -0.13 -3.73 9.70 22.27 0.22 -3.51 16 30 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.08 1.68 8.14 -2.38 -0.02 1.67 16 32 H 0.04 1.29 6.88 -2.39 -0.02 1.27 16 33 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.11 2.26 7.85 -2.38 -0.02 2.24 16 35 H 0.37 19.37 7.86 -92.71 -0.73 18.64 16 36 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 37 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.07 2.05 7.48 -2.39 -0.02 2.03 16 39 H 0.14 2.40 8.08 -2.39 -0.02 2.38 16 40 H 0.10 2.69 7.80 -2.39 -0.02 2.67 16 41 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 42 H 0.17 1.43 7.95 -2.91 -0.02 1.40 16 43 H 0.17 1.25 7.88 -2.39 -0.02 1.23 16 44 H 0.12 3.13 8.06 -2.91 -0.02 3.11 16 45 H 0.11 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -73.18 383.26 4.93 -68.25 By element: Atomic # 1 Polarization: 32.86 SS G_CDS: 0.28 Total: 33.14 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: 4.90 Total: -2.01 kcal Atomic # 7 Polarization: -111.02 SS G_CDS: -3.79 Total: -114.81 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.05 Total: -23.25 kcal Atomic # 9 Polarization: -9.41 SS G_CDS: 1.55 Total: -7.86 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -73.18 4.93 -68.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989169416.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.208 kcal (2) G-P(sol) polarization free energy of solvation -73.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds