Wall clock time and date at job start Tue Mar 31 2020 21:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.32886 * 2 1 4 4 C 1.54904 * 110.36492 * 237.64390 * 2 1 3 5 5 C 1.55158 * 101.58206 * 204.15487 * 4 2 1 6 6 H 1.09004 * 110.86642 * 277.06777 * 5 4 2 7 7 N 1.46496 * 110.72160 * 153.86889 * 5 4 2 8 8 C 1.36935 * 120.00221 * 160.02071 * 7 5 4 9 9 H 1.08001 * 120.00176 * 0.02562 * 8 7 5 10 10 C 1.38813 * 120.00382 * 179.97438 * 8 7 5 11 11 N 1.31618 * 120.00240 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 119.99684 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.46845 * 90.00337 * 12 10 8 14 14 H 1.48503 * 109.47399 * 209.99827 * 12 10 8 15 15 H 1.48498 * 109.47295 * 330.00433 * 12 10 8 16 16 C 1.54322 * 102.94332 * 35.50223 * 5 4 2 17 17 N 1.47024 * 107.27064 * 337.81016 * 16 5 4 18 18 C 1.34777 * 125.64781 * 178.97781 * 17 16 5 19 19 O 1.21283 * 119.99995 * 179.97438 * 18 17 16 20 20 C 1.50695 * 119.99947 * 359.97387 * 18 17 16 21 21 C 1.50701 * 109.47123 * 180.02562 * 20 18 17 22 22 C 1.38243 * 119.99668 * 269.72553 * 21 20 18 23 23 C 1.38229 * 119.99693 * 179.76681 * 22 21 20 24 24 C 1.38236 * 120.00152 * 0.48072 * 23 22 21 25 25 C 1.50701 * 120.00305 * 179.76680 * 24 23 22 26 26 F 1.39904 * 109.47234 * 120.02404 * 25 24 23 27 27 F 1.39901 * 109.47589 * 240.02761 * 25 24 23 28 28 C 1.38233 * 119.99827 * 359.79553 * 24 23 22 29 29 C 1.38228 * 120.00240 * 89.99855 * 21 20 18 30 30 H 1.09004 * 109.47187 * 299.21509 * 1 2 3 31 31 H 1.08997 * 109.47322 * 59.21587 * 1 2 3 32 32 H 1.08998 * 109.47382 * 179.22225 * 1 2 3 33 33 H 1.09000 * 111.00319 * 86.07983 * 4 2 1 34 34 H 1.09004 * 111.00857 * 322.22689 * 4 2 1 35 35 H 0.97000 * 120.00132 * 340.01738 * 7 5 4 36 36 H 0.97000 * 119.99717 * 180.02562 * 11 10 8 37 37 H 1.09000 * 109.88254 * 97.22934 * 16 5 4 38 38 H 1.08998 * 109.88248 * 218.23770 * 16 5 4 39 39 H 1.09002 * 109.47105 * 299.99791 * 20 18 17 40 40 H 1.08994 * 109.47312 * 60.00001 * 20 18 17 41 41 H 1.08000 * 120.00024 * 359.97438 * 22 21 20 42 42 H 1.08004 * 120.00002 * 180.25432 * 23 22 21 43 43 H 1.09005 * 109.46820 * 0.02747 * 25 24 23 44 44 H 1.08005 * 119.99813 * 179.97438 * 28 24 23 45 45 H 1.08001 * 120.00263 * 0.02562 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0691 -0.7772 -1.2267 5 6 3.4777 -1.2006 -0.7329 6 1 4.1967 -0.3932 -0.8718 7 7 3.9249 -2.4144 -1.4205 8 6 5.2567 -2.7309 -1.4545 9 1 5.9775 -2.0859 -0.9740 10 6 5.6804 -3.8813 -2.1056 11 7 6.9605 -4.1857 -2.1378 12 14 4.4336 -4.9981 -2.9348 13 1 4.2447 -4.5689 -4.3438 14 1 4.9270 -6.3985 -2.9059 15 1 3.1379 -4.9148 -2.2140 16 6 3.2493 -1.4761 0.7683 17 7 2.0430 -0.7373 1.1691 18 6 1.4972 -0.7339 2.4014 19 8 0.4965 -0.0843 2.6195 20 6 2.1303 -1.5371 3.5081 21 6 1.3319 -1.3640 4.7745 22 6 1.6453 -0.3457 5.6553 23 6 0.9099 -0.1839 6.8145 24 6 -0.1325 -1.0464 7.0978 25 6 -0.9309 -0.8733 8.3642 26 9 -2.2733 -0.6465 8.0419 27 9 -0.8273 -2.0310 9.1428 28 6 -0.4422 -2.0682 6.2198 29 6 0.2899 -2.2268 5.0580 30 1 -0.3634 0.5016 0.8970 31 1 -0.3634 0.5259 -0.8828 32 1 -0.3634 -1.0275 -0.0139 33 1 2.1398 -0.1286 -2.0999 34 1 1.4510 -1.6496 -1.4391 35 1 3.2775 -2.9940 -1.8517 36 1 7.2565 -4.9895 -2.5931 37 1 3.1013 -2.5437 0.9309 38 1 4.1076 -1.1292 1.3436 39 1 2.1451 -2.5909 3.2296 40 1 3.1506 -1.1900 3.6711 41 1 2.4626 0.3255 5.4361 42 1 1.1522 0.6142 7.5007 43 1 -0.5431 -0.0226 8.9247 44 1 -1.2564 -2.7423 6.4414 45 1 0.0481 -3.0253 4.3722 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989169417.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:03 Heat of formation + Delta-G solvation = -95.688117 kcal Electronic energy + Delta-G solvation = -28670.144717 eV Core-core repulsion = 24323.423979 eV Total energy + Delta-G solvation = -4346.720738 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.25695 -47.24489 -40.38874 -39.36461 -37.45992 -34.39872 -33.69638 -31.86767 -31.58132 -31.27749 -29.13445 -28.79208 -25.57980 -25.27749 -23.71530 -23.14018 -22.10615 -21.03094 -20.49041 -18.79535 -17.80121 -17.77524 -17.63073 -17.47492 -16.85848 -16.30755 -15.86491 -15.42029 -14.97153 -14.65122 -14.61634 -14.20530 -14.17418 -13.74381 -13.62699 -13.62023 -13.46630 -13.42408 -13.05190 -12.73519 -12.63299 -12.47917 -12.19356 -12.11727 -12.03150 -11.88024 -11.57511 -11.31405 -11.22837 -11.13314 -10.91922 -10.76735 -10.47625 -10.17283 -9.72755 -9.60324 -9.19967 -9.13448 -9.01269 -8.45064 -7.48175 -5.91495 -3.30015 0.82866 1.13531 2.71112 3.02000 3.27443 3.30554 3.36769 3.41933 3.46665 3.85667 4.21986 4.45874 4.48710 4.57416 4.61525 4.68073 4.75841 4.93497 4.99601 5.06496 5.09997 5.12855 5.30339 5.35241 5.36647 5.45203 5.50378 5.60096 5.66303 5.71298 5.74572 5.85811 5.93773 6.00340 6.05183 6.07891 6.24749 6.29885 6.31947 6.34474 6.55916 6.62552 6.69349 7.68365 7.82470 8.27041 8.27647 9.03414 9.75723 9.93564 11.25992 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017299 B = 0.002296 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.199333 B =12191.679060 C =12920.475383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.138 3.862 3 H 0.074 0.926 4 C -0.140 4.140 5 C 0.178 3.822 6 H 0.075 0.925 7 N -0.738 5.738 8 C -0.255 4.255 9 H 0.093 0.907 10 C 0.010 3.990 11 N -0.928 5.928 12 Si 0.884 3.116 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.277 1.277 16 C 0.072 3.928 17 N -0.611 5.611 18 C 0.531 3.469 19 O -0.541 6.541 20 C -0.106 4.106 21 C -0.034 4.034 22 C -0.108 4.108 23 C -0.084 4.084 24 C -0.177 4.177 25 C 0.314 3.686 26 F -0.201 7.201 27 F -0.201 7.201 28 C -0.078 4.078 29 C -0.106 4.106 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.364 0.636 36 H 0.261 0.739 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.117 0.883 44 H 0.126 0.874 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.604 8.525 16.821 23.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.035 3.965 3 H 0.092 0.908 4 C -0.179 4.179 5 C 0.066 3.934 6 H 0.092 0.908 7 N -0.379 5.379 8 C -0.385 4.385 9 H 0.110 0.890 10 C -0.186 4.186 11 N -0.575 5.575 12 Si 0.714 3.286 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.203 1.203 16 C -0.054 4.054 17 N -0.345 5.345 18 C 0.320 3.680 19 O -0.419 6.419 20 C -0.146 4.146 21 C -0.035 4.035 22 C -0.126 4.126 23 C -0.102 4.102 24 C -0.178 4.178 25 C 0.260 3.740 26 F -0.182 7.182 27 F -0.183 7.183 28 C -0.096 4.096 29 C -0.124 4.124 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.198 0.802 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.134 0.866 44 H 0.144 0.856 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.903 8.813 17.020 23.678 hybrid contribution -0.706 -1.147 -0.656 1.499 sum -14.609 7.666 16.363 23.237 Atomic orbital electron populations 1.22163 0.94273 1.02421 1.03218 1.21840 0.94798 0.95394 0.84506 0.90792 1.23185 0.97574 1.00407 0.96751 1.21134 0.93286 0.90485 0.88483 0.90758 1.42736 1.05915 1.24779 1.64508 1.19058 0.82326 1.06606 1.30470 0.88960 1.24687 0.95647 0.98048 1.00246 1.69695 1.12989 1.27203 1.47564 0.86580 0.81150 0.80944 0.79975 1.20913 1.21615 1.20291 1.23258 0.85412 0.96613 1.00074 1.48648 1.28742 1.48335 1.08780 1.19993 0.84040 0.81898 0.82099 1.90645 1.25352 1.44025 1.81894 1.20745 1.00181 1.02515 0.91151 1.19500 0.95122 0.94618 0.94250 1.20975 1.00207 0.97548 0.93859 1.20840 0.94131 0.97906 0.97360 1.20268 0.99989 1.00119 0.97395 1.20394 0.78329 0.86285 0.88962 1.93018 1.36658 1.94796 1.93716 1.93012 1.95969 1.53103 1.76188 1.20891 0.98708 0.96482 0.93515 1.21007 0.95001 0.99656 0.96782 0.89707 0.92361 0.92934 0.89864 0.90740 0.80222 0.92843 0.90863 0.91701 0.87583 0.87570 0.85340 0.85321 0.86595 0.85576 0.85446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 8.71 37.16 0.32 -1.79 16 2 C 0.14 1.83 3.77 -66.42 -0.25 1.58 16 3 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 4 C -0.14 -1.95 6.11 -24.58 -0.15 -2.10 16 5 C 0.18 2.97 3.59 -66.10 -0.24 2.73 16 6 H 0.07 1.26 8.12 -51.93 -0.42 0.84 16 7 N -0.74 -15.63 4.98 -51.65 -0.26 -15.88 16 8 C -0.26 -6.58 10.46 -15.06 -0.16 -6.74 16 9 H 0.09 2.55 8.06 -52.49 -0.42 2.12 16 10 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 11 N -0.93 -27.62 13.97 55.49 0.78 -26.85 16 12 Si 0.88 20.80 27.73 -169.99 -4.71 16.09 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.28 -6.10 6.52 56.52 0.37 -5.73 16 16 C 0.07 1.08 6.24 -3.06 -0.02 1.06 16 17 N -0.61 -8.53 3.24 -163.05 -0.53 -9.06 16 18 C 0.53 7.43 7.62 -10.99 -0.08 7.34 16 19 O -0.54 -8.90 13.69 5.56 0.08 -8.82 16 20 C -0.11 -1.18 5.02 -29.04 -0.15 -1.32 16 21 C -0.03 -0.39 4.37 -104.62 -0.46 -0.84 16 22 C -0.11 -1.09 9.70 -39.58 -0.38 -1.48 16 23 C -0.08 -0.76 9.67 -39.59 -0.38 -1.14 16 24 C -0.18 -1.75 5.37 -104.62 -0.56 -2.31 16 25 C 0.31 2.65 5.45 36.01 0.20 2.85 16 26 F -0.20 -2.10 17.26 2.25 0.04 -2.06 16 27 F -0.20 -2.01 17.26 2.25 0.04 -1.97 16 28 C -0.08 -0.84 9.60 -39.58 -0.38 -1.21 16 29 C -0.11 -1.18 9.70 -39.59 -0.38 -1.57 16 30 H 0.08 1.25 5.89 -51.93 -0.31 0.94 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.07 7.92 -51.93 -0.41 0.65 16 35 H 0.36 7.68 5.58 -40.82 -0.23 7.46 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.07 1.17 8.03 -51.93 -0.42 0.76 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.11 1.09 8.08 -51.93 -0.42 0.67 16 40 H 0.11 1.01 8.08 -51.93 -0.42 0.59 16 41 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.13 0.76 7.95 -52.48 -0.42 0.34 16 43 H 0.12 0.56 7.88 -51.93 -0.41 0.16 16 44 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 45 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 378.53 15.07 5.70 5.70 Total: -1.00 -31.62 378.53 -8.46 -40.08 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -6.42 Total: 7.51 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -3.17 Total: -4.74 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: -0.01 Total: -51.79 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.08 Total: -8.82 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.08 Total: -4.03 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.71 Total: 16.09 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.62 -8.46 -40.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989169417.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.604 kcal (2) G-P(sol) polarization free energy of solvation -31.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds